3TD
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O5' | sing | 1.61Å | 1.52Å | |
| P | OP1 | sing | 1.61Å | 1.51Å | |
| P | OP2 | doub | 1.48Å | 1.48Å | |
| N1 | C2 | sing | 1.35Å | 1.35Å | |
| N1 | C6 | sing | 1.37Å | 1.35Å | |
| N1 | HN1 | sing | 0.97Å | 1.00Å | |
| C2 | O2 | doub | 1.22Å | 1.25Å | |
| C2 | N3 | sing | 1.35Å | 1.37Å | |
| N3 | C4 | sing | 1.35Å | 1.38Å | |
| N3 | C10 | sing | 1.46Å | 1.45Å | |
| C4 | O4 | doub | 1.22Å | 1.26Å | |
| C4 | C5 | sing | 1.42Å | 1.42Å | |
| C5 | C6 | doub | 1.35Å | 1.41Å | |
| C5 | C1' | sing | 1.51Å | 1.49Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C1' | C2' | sing | 1.54Å | 1.54Å | |
| C1' | O4' | sing | 1.44Å | 1.44Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C10 | H10 | sing | 1.09Å | 1.10Å | |
| C10 | H10A | sing | 1.09Å | 1.10Å | |
| C10 | H10B | sing | 1.09Å | 1.10Å | |
| C2' | O2' | sing | 1.43Å | 1.43Å | |
| C2' | C3' | sing | 1.55Å | 1.54Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.55Å | 1.56Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C5' | sing | 1.53Å | 1.55Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.34Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| P | O9 | sing | 1.61Å | 1.51Å | |
| OP1 | H14 | sing | 0.97Å | 0.95Å | |
| O9 | H15 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O5' | P | OP1 | 109.0° | 109.5° |
| O5' | P | OP2 | 110.0° | 109.5° |
| P | O5' | C5' | 125.2° | 123.0° |
| O5' | P | O9 | 109.5° | 109.4° |
| OP1 | P | OP2 | 109.8° | 109.5° |
| OP1 | P | O9 | 109.1° | 109.5° |
| P | OP1 | H14 | 109.5° | 114.0° |
| OP2 | P | O9 | 109.5° | 109.5° |
| C2 | N1 | C6 | 121.5° | 120.6° |
| C2 | N1 | HN1 | 119.2° | 119.6° |
| N1 | C2 | O2 | 116.0° | 119.5° |
| N1 | C2 | N3 | 121.1° | 120.9° |
| C6 | N1 | HN1 | 119.2° | 119.8° |
| N1 | C6 | C5 | 120.8° | 119.7° |
| N1 | C6 | H6 | 119.6° | 120.2° |
| O2 | C2 | N3 | 123.0° | 119.6° |
| C2 | N3 | C4 | 118.7° | 120.3° |
| C2 | N3 | C10 | 120.1° | 119.9° |
| C4 | N3 | C10 | 121.2° | 119.8° |
| N3 | C4 | O4 | 120.3° | 120.4° |
| N3 | C4 | C5 | 121.5° | 119.4° |
| N3 | C10 | H10 | 109.5° | 109.4° |
| N3 | C10 | H10A | 109.4° | 109.5° |
| N3 | C10 | H10B | 109.4° | 109.5° |
| O4 | C4 | C5 | 118.2° | 120.3° |
| C4 | C5 | C6 | 116.4° | 119.1° |
| C4 | C5 | C1' | 123.0° | 120.5° |
| C6 | C5 | C1' | 120.6° | 120.5° |
| C5 | C6 | H6 | 119.6° | 120.1° |
| C5 | C1' | C2' | 112.5° | 109.9° |
| C5 | C1' | O4' | 113.2° | 109.9° |
| C5 | C1' | H1' | 109.1° | 109.9° |
| C2' | C1' | O4' | 103.4° | 107.3° |
| C2' | C1' | H1' | 108.5° | 109.9° |
| C1' | C2' | O2' | 112.6° | 110.5° |
| C1' | C2' | C3' | 103.1° | 104.2° |
| C1' | C2' | H2' | 108.7° | 110.4° |
| O4' | C1' | H1' | 109.9° | 110.0° |
| C1' | O4' | C4' | 107.5° | 107.0° |
| H10 | C10 | H10A | 109.5° | 109.5° |
| H10 | C10 | H10B | 109.5° | 109.5° |
| H10A | C10 | H10B | 109.5° | 109.5° |
| O2' | C2' | C3' | 113.3° | 110.6° |
| O2' | C2' | H2' | 110.2° | 110.4° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C3' | C2' | H2' | 108.7° | 110.6° |
| C2' | C3' | O3' | 112.1° | 110.9° |
| C2' | C3' | C4' | 103.8° | 102.1° |
| C2' | C3' | H3' | 109.5° | 111.0° |
| O3' | C3' | C4' | 111.0° | 110.9° |
| O3' | C3' | H3' | 111.0° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 109.3° | 110.9° |
| C3' | C4' | O4' | 106.7° | 103.5° |
| C3' | C4' | C5' | 113.2° | 110.6° |
| C3' | C4' | H4' | 108.2° | 110.6° |
| O4' | C4' | C5' | 110.7° | 110.6° |
| O4' | C4' | H4' | 109.8° | 110.5° |
| C5' | C4' | H4' | 108.3° | 110.7° |
| C4' | C5' | O5' | 111.1° | 109.5° |
| C4' | C5' | H5' | 109.1° | 109.4° |
| C4' | C5' | H5'A | 109.1° | 109.5° |
| O5' | C5' | H5' | 109.1° | 109.4° |
| O5' | C5' | H5'A | 109.1° | 109.5° |
| H5' | C5' | H5'A | 109.5° | 109.5° |
| P | O9 | H15 | 109.5° | 113.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | P | OP1 | OP2 | 120.5° | 120.0° |
| O5' | P | OP1 | O9 | 119.5° | 119.9° |
| O5' | P | OP2 | O9 | 120.3° | 120.0° |
| P | O5' | C5' | C4' | 178.3° | 180.0° |
| P | O5' | C5' | H5' | 58.0° | 60.0° |
| P | O5' | C5' | H5'A | 61.5° | 60.0° |
| O5' | P | OP1 | H14 | 120.5° | 59.9° |
| O5' | P | O9 | H15 | 120.7° | 180.0° |
| OP1 | P | OP2 | O9 | 119.7° | 120.0° |
| OP1 | P | O5' | C5' | 61.1° | 65.1° |
| OP1 | P | O9 | H15 | 120.1° | 60.0° |
| OP2 | P | O5' | C5' | 59.3° | 55.0° |
| OP2 | P | OP1 | H14 | 0.0° | 179.9° |
| OP2 | P | O9 | H15 | 0.0° | 60.0° |
| C2 | N1 | C6 | HN1 | 180.0° | 179.7° |
| N1 | C2 | O2 | N3 | 179.6° | 180.0° |
| N1 | C2 | N3 | C4 | 1.4° | 0.0° |
| N1 | C2 | N3 | C10 | 179.8° | 180.0° |
| C2 | N1 | C6 | C5 | 0.6° | 0.0° |
| C2 | N1 | C6 | H6 | 179.4° | 180.0° |
| C6 | N1 | C2 | O2 | 179.2° | 180.0° |
| C6 | N1 | C2 | N3 | 0.4° | 0.0° |
| N1 | C6 | C5 | C4 | 0.6° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| N1 | C6 | C5 | C1' | 179.1° | 180.0° |
| HN1 | N1 | C2 | O2 | 0.8° | 0.3° |
| HN1 | N1 | C2 | N3 | 179.5° | 179.7° |
| HN1 | N1 | C6 | C5 | 179.5° | 179.7° |
| HN1 | N1 | C6 | H6 | 0.5° | 0.2° |
| O2 | C2 | N3 | C4 | 178.2° | 180.0° |
| O2 | C2 | N3 | C10 | 0.6° | 0.0° |
| C2 | N3 | C4 | C10 | 178.9° | 180.0° |
| C2 | N3 | C4 | O4 | 178.9° | 180.0° |
| C2 | N3 | C4 | C5 | 1.3° | 0.0° |
| C2 | N3 | C10 | H10 | 180.0° | 0.0° |
| C2 | N3 | C10 | H10A | 60.0° | 120.0° |
| C2 | N3 | C10 | H10B | 60.0° | 120.0° |
| N3 | C4 | O4 | C5 | 179.8° | 180.0° |
| N3 | C4 | C5 | C6 | 0.4° | 0.0° |
| N3 | C4 | C5 | C1' | 178.1° | 180.0° |
| C4 | N3 | C10 | H10 | 1.2° | 180.0° |
| C4 | N3 | C10 | H10A | 118.9° | 60.0° |
| C4 | N3 | C10 | H10B | 121.2° | 60.0° |
| C10 | N3 | C4 | O4 | 0.0° | 0.0° |
| C10 | N3 | C4 | C5 | 179.8° | 180.0° |
| N3 | C10 | H10 | H10A | 120.0° | 120.0° |
| N3 | C10 | H10 | H10B | 120.0° | 120.0° |
| N3 | C10 | H10A | H10B | 120.0° | 120.0° |
| O4 | C4 | C5 | C6 | 179.8° | 180.0° |
| O4 | C4 | C5 | C1' | 1.7° | 0.0° |
| C4 | C5 | C6 | C1' | 178.5° | 180.0° |
| C4 | C5 | C6 | H6 | 179.4° | 179.9° |
| C4 | C5 | C1' | C2' | 89.7° | 65.0° |
| C4 | C5 | C1' | O4' | 153.5° | 52.8° |
| C4 | C5 | C1' | H1' | 30.8° | 173.9° |
| C6 | C5 | C1' | C2' | 88.7° | 115.0° |
| C6 | C5 | C1' | O4' | 28.1° | 127.2° |
| C6 | C5 | C1' | H1' | 150.8° | 6.1° |
| C1' | C5 | C6 | H6 | 0.9° | 0.1° |
| C5 | C1' | C2' | O4' | 122.5° | 119.5° |
| C5 | C1' | C2' | H1' | 120.8° | 121.0° |
| C5 | C1' | O4' | H1' | 122.2° | 121.0° |
| C5 | C1' | C2' | O2' | 78.8° | 119.8° |
| C5 | C1' | C2' | C3' | 158.8° | 121.4° |
| C5 | C1' | C2' | H2' | 43.6° | 2.7° |
| C5 | C1' | O4' | C4' | 161.8° | 145.9° |
| C2' | C1' | O4' | H1' | 115.7° | 119.5° |
| C1' | C2' | O2' | C3' | 116.5° | 114.8° |
| C1' | C2' | O2' | H2' | 121.5° | 122.5° |
| C1' | C2' | C3' | H2' | 115.2° | 118.7° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| C1' | C2' | C3' | O3' | 99.9° | 139.1° |
| C1' | C2' | C3' | C4' | 19.9° | 20.9° |
| C1' | C2' | C3' | H3' | 136.5° | 97.3° |
| C2' | C1' | O4' | C4' | 39.8° | 26.5° |
| O4' | C1' | C2' | O2' | 158.7° | 120.7° |
| O4' | C1' | C2' | C3' | 36.3° | 2.0° |
| O4' | C1' | C2' | H2' | 78.9° | 116.8° |
| C1' | O4' | C4' | C3' | 26.9° | 40.0° |
| C1' | O4' | C4' | C5' | 150.4° | 158.5° |
| C1' | O4' | C4' | H4' | 90.1° | 78.4° |
| H1' | C1' | C2' | O2' | 42.0° | 1.2° |
| H1' | C1' | C2' | C3' | 80.4° | 117.6° |
| H1' | C1' | C2' | H2' | 164.4° | 123.7° |
| H1' | C1' | O4' | C4' | 75.9° | 93.0° |
| H10 | C10 | H10A | H10B | 120.0° | 120.0° |
| O2' | C2' | C3' | H2' | 122.9° | 122.6° |
| O2' | C2' | C3' | O3' | 22.0° | 20.4° |
| O2' | C2' | C3' | C4' | 141.8° | 97.8° |
| O2' | C2' | C3' | H3' | 101.6° | 143.9° |
| C3' | C2' | O2' | HO2' | 63.5° | 65.2° |
| C2' | C3' | O3' | C4' | 115.5° | 112.7° |
| C2' | C3' | O3' | H3' | 122.7° | 123.7° |
| C2' | C3' | C4' | H3' | 116.7° | 118.3° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
| C2' | C3' | C4' | O4' | 2.9° | 37.0° |
| C2' | C3' | C4' | C5' | 124.9° | 155.5° |
| C2' | C3' | C4' | H4' | 115.1° | 81.4° |
| H2' | C2' | O2' | HO2' | 58.5° | 57.5° |
| H2' | C2' | C3' | O3' | 144.9° | 102.2° |
| H2' | C2' | C3' | C4' | 95.3° | 139.6° |
| H2' | C2' | C3' | H3' | 21.3° | 21.3° |
| O3' | C3' | C4' | H3' | 122.8° | 123.6° |
| O3' | C3' | C4' | O4' | 123.4° | 155.2° |
| O3' | C3' | C4' | C5' | 114.6° | 86.3° |
| O3' | C3' | C4' | H4' | 5.4° | 36.8° |
| C4' | C3' | O3' | HO3' | 64.5° | 174.2° |
| C3' | C4' | O4' | C5' | 123.5° | 118.5° |
| C3' | C4' | O4' | H4' | 117.0° | 118.5° |
| C3' | C4' | C5' | H4' | 119.9° | 123.0° |
| C3' | C4' | C5' | O5' | 179.5° | 175.0° |
| C3' | C4' | C5' | H5' | 59.3° | 55.1° |
| C3' | C4' | C5' | H5'A | 60.2° | 64.9° |
| H3' | C3' | O3' | HO3' | 57.3° | 62.2° |
| H3' | C3' | C4' | O4' | 113.8° | 81.3° |
| H3' | C3' | C4' | C5' | 8.2° | 37.2° |
| H3' | C3' | C4' | H4' | 128.2° | 160.3° |
| O4' | C4' | C5' | H4' | 120.4° | 122.9° |
| O4' | C4' | C5' | O5' | 60.8° | 70.9° |
| O4' | C4' | C5' | H5' | 179.0° | 169.1° |
| O4' | C4' | C5' | H5'A | 59.5° | 49.1° |
| C4' | C5' | O5' | H5' | 120.2° | 120.0° |
| C4' | C5' | O5' | H5'A | 120.3° | 120.1° |
| C4' | C5' | H5' | H5'A | 119.3° | 120.0° |
| H4' | C4' | C5' | O5' | 59.6° | 52.0° |
| H4' | C4' | C5' | H5' | 60.7° | 68.0° |
| H4' | C4' | C5' | H5'A | 179.8° | 172.0° |
| O5' | C5' | H5' | H5'A | 119.3° | 120.0° |
| C5' | O5' | P | O9 | 179.7° | 175.0° |
| O9 | P | OP1 | H14 | 120.0° | 60.0° |
