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SummaryGeometryRelated PDB entries

3SO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O10P09doub1.48Å1.48Å
O12P09sing1.61Å1.48Å
P09O11sing1.61Å1.49Å
P09O08sing1.61Å1.79Å
C05N04doub1.32Å1.36ÅAromatic
C05C06sing1.38Å1.39ÅAromatic
C07O08sing1.43Å1.28Å
C07C06sing1.51Å1.54Å
N04C03sing1.32Å1.36ÅAromatic
C06C13doub1.40Å1.40ÅAromatic
C03C28sing1.51Å1.47Å
C03C02doub1.39Å1.37ÅAromatic
C13C02sing1.41Å1.41ÅAromatic
C13C14sing1.47Å1.46Å
C02O01sing1.36Å1.31Å
C14C15doub1.35Å1.30Å
C15C16sing1.41Å1.46Å
C17C16sing1.51Å1.50Å
C17C18sing1.51Å1.47Å
C19C18doub1.34Å1.36ÅAromatic
C19N20sing1.37Å1.38ÅAromatic
C16O27doub1.21Å1.20Å
C18C22sing1.47Å1.45ÅAromatic
N20C21sing1.38Å1.38ÅAromatic
C22C21doub1.41Å1.38ÅAromatic
C22C23sing1.40Å1.40ÅAromatic
C21C26sing1.39Å1.41ÅAromatic
C23C24doub1.37Å1.36ÅAromatic
C26C25doub1.38Å1.36ÅAromatic
C24C25sing1.39Å1.38ÅAromatic
O01H1sing0.97Å0.95Å
C05H2sing1.08Å1.08Å
C07H3sing1.09Å1.10Å
C07H4sing1.09Å1.10Å
O11H5sing0.97Å0.95Å
O12H6sing0.97Å0.95Å
C14H7sing1.08Å1.08Å
C15H8sing1.08Å1.08Å
C17H9sing1.09Å1.10Å
C17H10sing1.09Å1.10Å
C19H11sing1.08Å1.08Å
N20H12sing0.97Å1.00Å
C23H13sing1.08Å1.08Å
C24H14sing1.08Å1.08Å
C25H15sing1.08Å1.08Å
C26H16sing1.08Å1.08Å
C28H17sing1.09Å1.10Å
C28H18sing1.09Å1.10Å
C28H19sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O10P09O12118.2°109.5°
O10P09O11120.1°109.4°
O10P09O0899.1°109.5°
O12P09O11116.1°109.5°
O12P09O0894.0°109.5°
P09O12H6109.5°114.0°
O11P09O08100.5°109.5°
P09O11H5109.5°114.0°
P09O08C07121.4°123.0°
N04C05C06119.7°121.1°
C05N04C03122.1°122.3°
N04C05H2120.2°119.5°
C05C06C07112.6°120.5°
C05C06C13121.4°119.1°
C06C05H2120.1°119.4°
O08C07C06110.2°109.5°
O08C07H3109.3°109.4°
O08C07H4109.3°109.5°
C07C06C13126.0°120.4°
C06C07H3109.3°109.5°
C06C07H4109.3°109.5°
N04C03C28117.6°119.6°
N04C03C02118.3°120.8°
C06C13C02115.7°118.0°
C06C13C14125.8°121.0°
C28C03C02124.2°119.6°
C03C28H17109.5°109.5°
C03C28H18109.4°109.5°
C03C28H19109.5°109.4°
C03C02C13122.8°118.8°
C03C02O01118.3°120.6°
C02C13C14118.4°121.0°
C13C02O01118.9°120.6°
C13C14C15124.0°120.0°
C13C14H7118.0°120.0°
C02O01H1109.5°114.0°
C14C15C16132.4°120.0°
C15C14H7118.0°120.0°
C14C15H8113.8°120.0°
C15C16C17120.8°120.0°
C15C16O27119.6°120.0°
C16C15H8113.8°120.0°
C16C17C18118.9°109.5°
C17C16O27119.3°120.0°
C16C17H9107.1°109.5°
C16C17H10107.1°109.5°
C17C18C19122.4°126.5°
C17C18C22131.2°126.5°
C18C17H9107.0°109.4°
C18C17H10107.1°109.5°
C18C19N20109.3°109.9°
C19C18C22106.4°107.0°
C18C19H11125.3°125.1°
C19N20C21109.1°109.9°
N20C19H11125.4°125.0°
C19N20H12125.4°125.1°
C18C22C21107.7°106.1°
C18C22C23137.0°134.0°
N20C21C22107.5°107.2°
N20C21C26130.3°133.5°
C21N20H12125.4°125.0°
C21C22C23115.3°119.9°
C22C21C26122.2°119.3°
C22C23C24123.1°119.8°
C22C23H13118.4°120.2°
C21C26C25119.9°119.8°
C21C26H16120.0°120.1°
C23C24C25120.4°120.5°
C24C23H13118.4°120.0°
C23C24H14119.8°119.8°
C26C25C24119.1°120.7°
C26C25H15120.5°119.7°
C25C26H16120.0°120.1°
C25C24H14119.8°119.8°
C24C25H15120.5°119.6°
H3C07H4109.5°109.4°
H9C17H10109.5°109.4°
H17C28H18109.5°109.5°
H17C28H19109.5°109.4°
H18C28H19109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O10P09O12O11153.8°120.0°
O10P09O12O08102.5°120.0°
O10P09O11O08107.0°120.0°
O10P09O08C0775.4°55.0°
O10P09O11H50.0°60.0°
O10P09O12H60.0°180.0°
O12P09O11O0899.7°120.0°
O12P09O08C0743.9°65.0°
O12P09O11H5153.3°60.0°
O11P09O08C07161.4°175.0°
O11P09O12H6153.8°60.0°
P09O08C07C06138.4°180.0°
P09O08C07H3101.5°60.0°
P09O08C07H418.3°59.9°
O08P09O11H5107.0°180.0°
O08P09O12H6102.5°60.0°
N04C05C06H2180.0°180.0°
N04C05C06C07179.1°180.0°
N04C05C06C131.4°0.3°
C05N04C03C28178.5°180.0°
C05N04C03C020.5°0.1°
C05C06C07O08159.9°0.0°
C05C06C07C13179.4°179.7°
C06C05N04C030.8°0.0°
C05C06C13C021.6°0.6°
C05C06C13C14178.4°180.0°
C05C06C07H380.0°120.0°
C05C06C07H439.8°120.0°
O08C07C06H3120.1°119.9°
O08C07C06H4120.1°120.0°
O08C07C06C1319.5°179.6°
O08C07H3H4119.6°119.9°
C07C06C13C02179.0°179.7°
C07C06C13C142.2°0.3°
C07C06C05H20.9°0.0°
C06C07H3H4119.7°120.1°
N04C03C28C02178.9°180.0°
N04C03C02C130.7°0.2°
N04C03C02O01179.7°179.9°
C03N04C05H2179.2°179.9°
N04C03C28H170.0°90.0°
N04C03C28H18120.0°30.0°
N04C03C28H19120.0°150.0°
C06C13C02C031.3°0.6°
C06C13C02C14177.0°179.4°
C06C13C02O01179.2°179.8°
C06C13C14C15135.0°130.0°
C13C06C05H2178.6°179.7°
C13C06C07H3100.6°59.7°
C13C06C07H4139.6°60.3°
C06C13C14H744.9°50.0°
C28C03C02C13178.2°179.7°
C28C03C02O011.4°0.1°
C03C28H17H18120.0°120.1°
C03C28H17H19120.0°119.9°
C03C28H18H19120.0°120.0°
C03C02C13O01179.6°179.7°
C03C02C13C14178.3°180.0°
C03C02O01H1180.0°90.0°
C02C03C28H17178.9°90.0°
C02C03C28H1858.9°150.0°
C02C03C28H1961.0°30.0°
C02C13C14C1541.7°50.6°
C13C02O01H10.4°90.3°
C02C13C14H7138.3°129.4°
C14C13C02O012.1°0.4°
C13C14C15H7180.0°180.0°
C13C14C15C16178.4°180.0°
C13C14C15H81.6°0.1°
C14C15C16H8180.0°179.9°
C14C15C16C1746.8°180.0°
C14C15C16O27138.4°0.0°
C15C16C17O27174.8°180.0°
C15C16C17C18143.5°180.0°
C16C15C14H71.6°0.0°
C15C16C17H922.2°60.0°
C15C16C17H1095.2°60.0°
C16C17C18H9121.3°120.0°
C16C17C18H10121.3°120.0°
C16C17C18C1942.1°94.7°
C16C17C18C22137.9°85.0°
C17C16C15H8133.2°0.1°
C16C17H9H10115.8°120.0°
C17C18C19C22180.0°179.8°
C17C18C19N20179.7°180.0°
C18C17C16O2741.7°0.0°
C17C18C22C21179.9°179.9°
C17C18C22C230.5°0.0°
C18C17H9H10115.7°120.0°
C17C18C19H110.3°0.1°
C18C19N20H11180.0°179.9°
C18C19N20C210.4°0.0°
C19C18C22C210.1°0.4°
C19C18C22C23179.5°179.8°
C19C18C17H979.2°145.3°
C19C18C17H10163.4°25.3°
C18C19N20H12179.7°180.0°
N20C19C18C220.3°0.2°
C19N20C21H12180.0°180.0°
C19N20C21C220.3°0.2°
C19N20C21C26179.4°180.0°
O27C16C15H841.6°179.9°
O27C16C17H9163.0°120.0°
O27C16C17H1079.7°120.0°
C18C22C21N200.1°0.4°
C18C22C21C23179.7°179.9°
C18C22C21C26179.6°179.8°
C18C22C23C24179.9°180.0°
C22C18C17H9100.8°35.0°
C22C18C17H1016.6°155.0°
C22C18C19H11179.7°179.9°
C18C22C23H130.0°0.1°
N20C21C22C26179.7°179.8°
N20C21C22C23179.8°179.8°
N20C21C26C25179.8°179.3°
C21N20C19H11179.6°179.9°
N20C21C26H160.3°0.0°
C21C22C23C240.5°0.2°
C22C21C26C250.6°0.4°
C22C21N20H12179.7°179.8°
C21C22C23H13179.5°179.9°
C22C21C26H16179.4°179.7°
C23C22C21C260.1°0.0°
C22C23C24H13180.0°179.9°
C22C23C24C250.7°0.1°
C22C23C24H14179.3°180.0°
C21C26C25H16180.0°179.3°
C21C26C25C240.5°0.6°
C26C21N20H120.6°0.0°
C21C26C25H15179.5°179.7°
C23C24C25C260.1°0.3°
C23C24C25H14180.0°179.9°
C23C24C25H15179.9°180.0°
C26C25C24H15180.0°179.7°
C26C25C24H14179.9°179.6°
C25C24C23H13179.4°180.0°
C24C25C26H16179.5°179.9°
H7C14C15H8178.4°179.9°
H11C19N20H120.3°0.1°
H13C23C24H140.6°0.1°
H14C24C25H150.1°0.1°
H15C25C26H160.5°0.4°
H17C28H18H19120.0°120.0°

223532

PDB entries from 2024-08-07

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