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SummaryGeometryRelated PDB entries

3S5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O10S07doub1.42Å1.51Å
O09S07doub1.42Å1.53Å
O08S07sing1.52Å1.52Å
S07C06sing1.81Å1.76Å
C06C05sing1.53Å1.53Å
C05N04sing1.47Å1.44Å
N03C02doub1.30Å1.30Å
N04C02sing1.37Å1.37Å
C02N01sing1.38Å1.31Å
N01H1sing0.97Å1.00Å
N01H2sing0.97Å1.00Å
N03H3sing0.97Å1.00Å
N04H4sing0.97Å1.00Å
C05H5sing1.09Å1.10Å
C05H6sing1.09Å1.10Å
C06H7sing1.09Å1.10Å
C06H8sing1.09Å1.10Å
O08H9sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O10S07O09108.1°121.0°
O10S07O08110.4°104.3°
O10S07C06105.5°110.5°
O09S07O08109.9°104.3°
O09S07C06111.8°110.5°
O08S07C06111.1°104.5°
S07O08H9109.5°114.0°
S07C06C05112.2°109.5°
S07C06H7108.8°109.5°
S07C06H8108.8°109.4°
C06C05N04109.3°109.5°
C06C05H5109.5°109.5°
C06C05H6109.5°109.5°
C05C06H7108.8°109.5°
C05C06H8108.8°109.5°
C05N04C02118.4°120.1°
C05N04H4120.8°119.9°
N04C05H5109.5°109.4°
N04C05H6109.5°109.5°
N03C02N04120.0°120.0°
N03C02N01119.6°120.0°
C02N03H3112.0°120.0°
N04C02N01120.4°120.0°
C02N04H4120.8°120.0°
C02N01H1120.0°120.0°
C02N01H2120.0°120.0°
H1N01H2120.0°120.1°
H5C05H6109.5°109.4°
H7C06H8109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O10S07O09O08120.5°116.8°
O10S07O09C06115.7°131.5°
O10S07O08C06116.7°116.1°
O10S07C06C05155.8°68.4°
O10S07C06H735.4°51.7°
O10S07C06H883.8°171.7°
O10S07O08H90.0°64.0°
O09S07O08C06124.2°116.1°
O09S07C06C0586.9°68.3°
O09S07C06H7152.7°171.6°
O09S07C06H833.5°51.6°
O09S07O08H9119.1°63.9°
O08S07C06C0536.2°180.0°
O08S07C06H784.2°60.0°
O08S07C06H8156.6°60.0°
S07C06C05H7120.4°120.0°
S07C06C05H8120.4°120.0°
S07C06C05N04153.9°180.0°
S07C06C05H586.1°60.0°
S07C06C05H634.0°60.0°
S07C06H7H8118.8°120.0°
C06S07O08H9116.7°180.0°
C06C05N04H5120.0°120.0°
C06C05N04H6120.0°120.0°
C06C05N04C02110.3°180.0°
C06C05N04H469.7°0.0°
C06C05H5H6120.1°120.0°
C05C06H7H8118.8°120.0°
C05N04C02N030.1°0.0°
C05N04C02H4180.0°180.0°
C05N04C02N01180.0°180.0°
N04C05H5H6120.1°119.9°
N04C05C06H733.6°60.0°
N04C05C06H885.7°60.0°
N03C02N04N01179.9°180.0°
N03C02N01H1179.9°0.0°
N03C02N01H20.1°179.8°
N03C02N04H4180.0°180.0°
N04C02N01H10.0°180.0°
N04C02N01H2180.0°0.2°
N04C02N03H3179.9°180.0°
C02N04C05H5129.8°60.0°
C02N04C05H69.7°60.0°
C02N01H1H2180.0°179.8°
N01C02N03H30.0°0.0°
N01C02N04H40.1°0.0°
H4N04C05H550.2°120.1°
H4N04C05H6170.3°120.0°
H5C05C06H7153.5°180.0°
H5C05C06H834.3°60.0°
H6C05C06H786.4°60.0°
H6C05C06H8154.3°180.0°

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PDB entries from 2024-07-17

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