English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

3OP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C7	C9	doub	1.38Å	1.33Å	Aromatic
C7	C5	sing	1.38Å	1.32Å	Aromatic
C9	N11	sing	1.32Å	1.35Å	Aromatic
C5	C3	doub	1.39Å	1.34Å	Aromatic
N11	C1	doub	1.32Å	1.31Å	Aromatic
C3	C1	sing	1.39Å	1.30Å	Aromatic
C3	O13	sing	1.36Å	1.36Å
C2	N12	doub	1.32Å	1.30Å	Aromatic
C2	C4	sing	1.39Å	1.32Å	Aromatic
N12	C10	sing	1.32Å	1.36Å	Aromatic
O13	C4	sing	1.36Å	1.33Å
C4	C6	doub	1.39Å	1.37Å	Aromatic
C10	C8	doub	1.38Å	1.37Å	Aromatic
C6	C8	sing	1.39Å	1.37Å	Aromatic
C5	H1	sing	1.08Å	1.08Å
C6	H2	sing	1.08Å	1.08Å
C7	H3	sing	1.08Å	1.08Å
C8	H4	sing	1.08Å	1.08Å
C9	H5	sing	1.08Å	1.08Å
C10	H6	sing	1.08Å	1.08Å
C2	H7	sing	1.08Å	1.08Å
C1	H8	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C9	C7	C5	117.5°	119.3°
C7	C9	N11	120.0°	120.9°
C9	C7	H3	121.3°	120.3°
C7	C9	H5	120.0°	119.5°
C7	C5	C3	122.7°	118.4°
C7	C5	H1	118.7°	120.9°
C5	C7	H3	121.3°	120.4°
C9	N11	C1	120.4°	121.8°
N11	C9	H5	120.0°	119.6°
C5	C3	C1	118.5°	119.0°
C5	C3	O13	120.2°	120.5°
C3	C5	H1	118.6°	120.8°
N11	C1	C3	120.9°	120.7°
N11	C1	H8	119.6°	119.6°
C1	C3	O13	121.3°	120.5°
C3	C1	H8	119.6°	119.7°
C3	O13	C4	121.0°	118.0°
N12	C2	C4	121.5°	120.7°
C2	N12	C10	119.7°	121.8°
N12	C2	H7	119.2°	119.7°
C2	C4	O13	119.4°	120.5°
C2	C4	C6	121.5°	119.0°
C4	C2	H7	119.3°	119.7°
N12	C10	C8	120.8°	120.8°
N12	C10	H6	119.6°	119.6°
O13	C4	C6	119.1°	120.5°
C4	C6	C8	118.2°	118.4°
C4	C6	H2	120.9°	120.8°
C10	C8	C6	118.3°	119.2°
C10	C8	H4	120.9°	120.3°
C8	C10	H6	119.6°	119.6°
C8	C6	H2	120.9°	120.8°
C6	C8	H4	120.8°	120.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C9	C7	C5	H3	180.0°	179.9°
C7	C9	N11	H5	180.0°	180.0°
C9	C7	C5	C3	1.4°	0.0°
C7	C9	N11	C1	1.9°	0.4°
C9	C7	C5	H1	178.6°	179.7°
C5	C7	C9	N11	1.8°	0.1°
C7	C5	C3	H1	180.0°	179.7°
C7	C5	C3	C1	0.9°	0.3°
C7	C5	C3	O13	178.7°	179.7°
C5	C7	C9	H5	178.2°	180.0°
C9	N11	C1	C3	1.4°	0.7°
N11	C9	C7	H3	178.1°	180.0°
C9	N11	C1	H8	178.6°	180.0°
C5	C3	C1	N11	0.9°	0.6°
C5	C3	C1	O13	177.8°	180.0°
C5	C3	O13	C4	113.6°	89.9°
C3	C5	C7	H3	178.6°	180.0°
C5	C3	C1	H8	179.1°	179.9°
N11	C1	C3	H8	180.0°	179.3°
N11	C1	C3	O13	178.7°	179.4°
C1	N11	C9	H5	178.2°	179.6°
C1	C3	O13	C4	68.6°	90.0°
C1	C3	C5	H1	179.1°	180.0°
C3	O13	C4	C2	74.9°	180.0°
C3	O13	C4	C6	104.8°	0.2°
O13	C3	C5	H1	1.3°	0.0°
O13	C3	C1	H8	1.3°	0.1°
N12	C2	C4	H7	180.0°	180.0°
N12	C2	C4	O13	179.8°	179.7°
N12	C2	C4	C6	0.5°	0.0°
C2	N12	C10	C8	0.1°	0.1°
C2	N12	C10	H6	179.9°	180.0°
C4	C2	N12	C10	0.3°	0.0°
C2	C4	O13	C6	179.7°	179.8°
C2	C4	C6	C8	0.5°	0.0°
C2	C4	C6	H2	179.5°	179.9°
N12	C10	C8	H6	180.0°	179.9°
N12	C10	C8	C6	0.0°	0.1°
N12	C10	C8	H4	180.0°	180.0°
C10	N12	C2	H7	179.7°	179.9°
O13	C4	C6	C8	179.9°	179.8°
O13	C4	C6	H2	0.1°	0.3°
O13	C4	C2	H7	0.2°	0.2°
C4	C6	C8	C10	0.2°	0.1°
C4	C6	C8	H2	180.0°	179.9°
C4	C6	C8	H4	179.8°	180.0°
C6	C4	C2	H7	179.5°	180.0°
C10	C8	C6	H4	180.0°	179.9°
C10	C8	C6	H2	179.8°	179.9°
C6	C8	C10	H6	180.0°	180.0°
H1	C5	C7	H3	1.4°	0.4°
H2	C6	C8	H4	0.2°	0.1°
H3	C7	C9	H5	1.8°	0.1°
H4	C8	C10	H6	0.0°	0.1°

225946

PDB entries from 2024-10-09

PDB statistics

PDBj update info

Contact PDBj

numon