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3ME

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
POP1doub1.48Å1.50Å
POP2sing1.61Å1.48Å
PO5'sing1.61Å1.58Å
OP2HO2sing0.97Å0.95Å
O5'C5'sing1.43Å1.42Å
C5'C4'sing1.53Å1.50Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C4'O4'sing1.44Å1.44Å
C4'C3'sing1.54Å1.52Å
C4'H4'sing1.09Å1.10Å
O4'C1'sing1.44Å1.42Å
C1'N1sing1.46Å1.47Å
C1'C2'sing1.55Å1.52Å
C1'H1'sing1.09Å1.10Å
N1C6sing1.37Å1.38Å
N1C2sing1.35Å1.37Å
C6C5doub1.35Å1.35Å
C6HC6sing1.08Å1.08Å
C2O2doub1.22Å1.23Å
C2N3sing1.35Å1.37Å
N3C4sing1.35Å1.38Å
N3HN3sing0.97Å1.00Å
C4O4doub1.22Å1.22Å
C4C5sing1.42Å1.45Å
C5C5Asing1.51Å1.50Å
C5AH5A1sing1.09Å1.10Å
C5AH5A2sing1.09Å1.10Å
C5AH5A3sing1.09Å1.10Å
C2'O2'sing1.43Å1.42Å
C2'C3'sing1.55Å1.51Å
C2'H2'sing1.09Å1.10Å
O2'CB'sing1.43Å1.42Å
CB'CC'sing1.53Å1.52Å
CB'HB'1sing1.09Å1.10Å
CB'HB'2sing1.09Å1.10Å
CC'OD'sing1.43Å1.41Å
CC'HC'1sing1.09Å1.10Å
CC'HC'2sing1.09Å1.10Å
OD'CE'sing1.43Å1.43Å
CE'CF'sing1.53Å1.54Å
CE'HE'1sing1.09Å1.10Å
CE'HE'2sing1.09Å1.10Å
CF'NG'sing1.47Å1.47Å
CF'HF'1sing1.09Å1.10Å
CF'HF'2sing1.09Å1.10Å
NG'CI'sing1.47Å1.46Å
NG'CJ'sing1.47Å1.46Å
CI'HI'1sing1.09Å1.10Å
CI'HI'2sing1.09Å1.10Å
CI'HI'3sing1.09Å1.10Å
CJ'HJ'1sing1.09Å1.10Å
CJ'HJ'2sing1.09Å1.10Å
CJ'HJ'3sing1.09Å1.10Å
C3'O3'sing1.43Å1.40Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
POXTsing1.61Å14.86Å
OXTHXTsing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OP1POP2119.2°109.5°
OP1PO5'106.4°109.5°
OP1POXT117.6°109.5°
OP2PO5'106.4°109.5°
POP2HO2109.5°114.0°
OP2POXT63.8°109.5°
PO5'C5'121.0°123.0°
O5'POXT44.1°109.5°
O5'C5'C4'109.9°109.5°
O5'C5'H5'1109.3°109.5°
O5'C5'H5'2109.3°109.4°
C4'C5'H5'1109.3°109.5°
C4'C5'H5'2109.4°109.5°
C5'C4'O4'110.3°109.9°
C5'C4'C3'115.0°109.9°
C5'C4'H4'103.3°109.9°
H5'1C5'H5'2109.6°109.5°
O4'C4'C3'103.3°107.3°
O4'C4'H4'115.1°109.9°
C4'O4'C1'109.4°107.0°
C3'C4'H4'110.3°110.0°
C4'C3'C2'102.6°104.2°
C4'C3'O3'114.8°110.5°
C4'C3'H3'111.4°110.5°
O4'C1'N1109.0°110.7°
O4'C1'C2'107.5°103.4°
O4'C1'H1'110.9°110.6°
N1C1'C2'109.0°110.6°
N1C1'H1'109.5°110.6°
C1'N1C6121.7°119.7°
C1'N1C2116.6°119.7°
C2'C1'H1'110.9°110.7°
C1'C2'O2'108.0°110.9°
C1'C2'C3'100.7°102.1°
C1'C2'H2'114.3°110.9°
C6N1C2121.7°120.7°
N1C6C5123.5°119.7°
N1C6HC6118.3°120.2°
N1C2O2123.3°119.5°
N1C2N3114.2°120.9°
C5C6HC6118.3°120.1°
C6C5C4117.6°119.1°
C6C5C5A123.0°120.5°
O2C2N3122.5°119.6°
C2N3C4127.5°120.3°
C2N3HN3116.2°119.9°
C4N3HN3116.2°119.9°
N3C4O4119.9°120.3°
N3C4C5115.4°119.4°
O4C4C5124.7°120.3°
C4C5C5A119.3°120.4°
C5C5AH5A1109.5°109.5°
C5C5AH5A2109.5°109.5°
C5C5AH5A3109.5°109.5°
H5A1C5AH5A2109.5°109.5°
H5A1C5AH5A3109.5°109.5°
H5A2C5AH5A3109.5°109.4°
O2'C2'C3'104.4°110.9°
O2'C2'H2'111.1°110.8°
C2'O2'CB'110.6°114.0°
C3'C2'H2'117.4°110.9°
C2'C3'O3'111.6°110.5°
C2'C3'H3'114.5°110.5°
O2'CB'CC'110.1°109.4°
O2'CB'HB'1109.3°109.5°
O2'CB'HB'2109.3°109.5°
CC'CB'HB'1109.3°109.5°
CC'CB'HB'2109.3°109.4°
CB'CC'OD'103.6°109.5°
CB'CC'HC'1111.5°109.5°
CB'CC'HC'2111.5°109.5°
HB'1CB'HB'2109.7°109.5°
OD'CC'HC'1111.5°109.5°
OD'CC'HC'2111.4°109.5°
CC'OD'CE'117.5°114.0°
HC'1CC'HC'2107.4°109.5°
OD'CE'CF'109.5°109.5°
OD'CE'HE'1109.4°109.5°
OD'CE'HE'2109.5°109.5°
CF'CE'HE'1109.4°109.4°
CF'CE'HE'2109.4°109.5°
CE'CF'NG'115.1°109.5°
CE'CF'HF'1107.6°109.5°
CE'CF'HF'2107.7°109.4°
HE'1CE'HE'2109.5°109.5°
NG'CF'HF'1107.6°109.5°
NG'CF'HF'2107.6°109.5°
CF'NG'CI'113.1°111.0°
CF'NG'CJ'115.0°111.0°
HF'1CF'HF'2111.2°109.5°
CI'NG'CJ'108.9°111.0°
NG'CI'HI'1109.5°109.5°
NG'CI'HI'2109.5°109.5°
NG'CI'HI'3109.5°109.5°
NG'CJ'HJ'1109.5°109.5°
NG'CJ'HJ'2109.5°109.5°
NG'CJ'HJ'3109.5°109.4°
HI'1CI'HI'2109.5°109.5°
HI'1CI'HI'3109.4°109.5°
HI'2CI'HI'3109.5°109.4°
HJ'1CJ'HJ'2109.5°109.4°
HJ'1CJ'HJ'3109.4°109.5°
HJ'2CJ'HJ'3109.5°109.5°
O3'C3'H3'102.4°110.5°
C3'O3'HO3'109.5°114.0°
POXTHXT90.0°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OP1POP2O5'120.2°120.0°
OP1POP2OXT108.5°120.0°
OP1PO5'OXT113.0°120.0°
OP1POP2HO20.0°180.0°
OP1PO5'C5'44.2°55.1°
OP1POXTHXT90.0°60.0°
OP2PO5'OXT15.1°120.0°
OP2PO5'C5'172.3°64.9°
OP2POXTHXT90.0°60.0°
O5'POP2HO2120.2°60.0°
PO5'C5'C4'175.7°180.0°
PO5'C5'H5'164.4°59.9°
PO5'C5'H5'255.6°60.1°
O5'POXTHXT90.0°180.0°
HO2OP2POXT108.5°60.0°
O5'C5'C4'H5'1120.0°120.1°
O5'C5'C4'H5'2120.0°119.9°
O5'C5'H5'1H5'2119.8°119.9°
O5'C5'C4'O4'63.0°66.6°
O5'C5'C4'C3'53.2°175.7°
O5'C5'C4'H4'173.5°54.5°
C5'O5'POXT157.1°175.1°
C4'C5'H5'1H5'2119.9°120.1°
C5'C4'O4'C3'123.4°119.4°
C5'C4'O4'H4'116.3°121.1°
C5'C4'C3'H4'116.3°121.1°
C5'C4'O4'C1'147.1°145.9°
C5'C4'C3'C2'159.0°121.4°
C5'C4'C3'O3'79.7°119.9°
C5'C4'C3'H3'36.0°2.7°
H5'1C5'C4'O4'177.0°53.5°
H5'1C5'C4'C3'66.8°64.3°
H5'1C5'C4'H4'53.5°174.6°
H5'2C5'C4'O4'56.9°173.6°
H5'2C5'C4'C3'173.2°55.8°
H5'2C5'C4'H4'66.5°65.4°
O4'C4'C3'H4'123.5°119.5°
C4'O4'C1'N1117.2°158.6°
C4'O4'C1'C2'0.8°40.1°
C4'O4'C1'H1'122.2°78.5°
O4'C4'C3'C2'38.7°2.0°
O4'C4'C3'O3'160.0°120.7°
O4'C4'C3'H3'84.3°116.7°
C3'C4'O4'C1'23.6°26.5°
C4'C3'C2'C1'38.1°20.9°
C4'C3'C2'O2'73.8°139.1°
C4'C3'C2'O3'123.4°118.7°
C4'C3'C2'H3'120.8°118.7°
C4'C3'C2'H2'162.8°97.3°
C4'C3'O3'H3'120.8°122.6°
C4'C3'O3'HO3'180.0°61.5°
H4'C4'O4'C1'96.6°93.0°
H4'C4'C3'C2'84.7°117.4°
H4'C4'C3'O3'36.6°1.2°
H4'C4'C3'H3'152.3°123.9°
O4'C1'N1C2'117.1°114.0°
O4'C1'N1H1'121.5°122.9°
O4'C1'C2'H1'121.4°118.5°
O4'C1'N1C625.2°126.5°
O4'C1'N1C2154.6°53.2°
O4'C1'C2'O2'84.4°155.2°
O4'C1'C2'C3'24.7°37.0°
O4'C1'C2'H2'151.5°81.2°
N1C1'C2'H1'120.6°123.0°
C1'N1C6C2179.8°179.7°
C1'N1C6C5177.1°180.0°
C1'N1C6HC62.9°0.1°
C1'N1C2O23.6°0.0°
C1'N1C2N3177.2°180.0°
N1C1'C2'O2'157.6°86.3°
N1C1'C2'C3'93.3°155.5°
N1C1'C2'H2'33.5°37.3°
C2'C1'N1C691.9°119.5°
C2'C1'N1C288.3°60.8°
C1'C2'O2'C3'106.5°112.7°
C1'C2'O2'H2'126.1°123.7°
C1'C2'C3'H2'124.7°118.2°
C1'C2'O2'CB'72.2°150.0°
C1'C2'C3'O3'161.5°97.8°
C1'C2'C3'H3'82.8°139.6°
H1'C1'N1C6146.6°3.5°
H1'C1'N1C233.2°176.2°
H1'C1'C2'O2'37.0°36.7°
H1'C1'C2'C3'146.1°81.5°
H1'C1'C2'H2'87.1°160.3°
N1C6C5HC6180.0°179.9°
C6N1C2O2176.6°179.7°
C6N1C2N32.6°0.3°
N1C6C5C40.9°0.1°
N1C6C5C5A178.0°180.0°
C2N1C6C52.7°0.3°
C2N1C6HC6177.3°179.7°
N1C2O2N3179.1°180.0°
N1C2N3C40.8°0.1°
N1C2N3HN3179.2°180.0°
C6C5C4N30.8°0.2°
C6C5C4O4178.2°180.0°
C6C5C4C5A178.9°179.9°
C6C5C5AH5A1180.0°89.9°
C6C5C5AH5A260.0°150.0°
C6C5C5AH5A360.0°30.1°
HC6C6C5C4179.1°180.0°
HC6C6C5C5A2.0°0.1°
O2C2N3C4178.3°180.0°
O2C2N3HN31.7°0.0°
C2N3C4HN3180.0°180.0°
C2N3C4O4178.3°180.0°
C2N3C4C50.9°0.2°
N3C4O4C5179.0°179.8°
N3C4C5C5A179.7°179.8°
HN3N3C4O41.7°0.1°
HN3N3C4C5179.2°179.8°
O4C4C5C5A0.7°0.1°
C4C5C5AH5A11.2°90.0°
C4C5C5AH5A2118.8°30.1°
C4C5C5AH5A3121.2°150.0°
C5C5AH5A1H5A2120.0°120.1°
C5C5AH5A1H5A3120.0°120.0°
C5C5AH5A2H5A3120.0°119.9°
H5A1C5AH5A2H5A3120.0°120.0°
O2'C2'C3'H2'123.4°123.6°
C2'O2'CB'CC'179.6°180.0°
C2'O2'CB'HB'159.6°60.0°
C2'O2'CB'HB'260.4°60.1°
O2'C2'C3'O3'49.6°20.4°
O2'C2'C3'H3'165.4°102.2°
C3'C2'O2'CB'178.8°97.3°
C2'C3'O3'H3'123.0°122.6°
C2'C3'O3'HO3'63.8°176.3°
H2'C2'O2'CB'53.8°26.3°
H2'C2'C3'O3'73.8°144.0°
H2'C2'C3'H3'41.9°21.4°
O2'CB'CC'HB'1120.0°120.0°
O2'CB'CC'HB'2120.0°119.9°
O2'CB'HB'1HB'2119.7°120.0°
O2'CB'CC'OD'56.2°65.0°
O2'CB'CC'HC'163.8°175.0°
O2'CB'CC'HC'2176.2°55.0°
CC'CB'HB'1HB'2119.7°120.0°
CB'CC'OD'HC'1120.0°120.0°
CB'CC'OD'HC'2120.0°120.0°
CB'CC'HC'1HC'2122.4°120.0°
CB'CC'OD'CE'163.4°180.0°
HB'1CB'CC'OD'176.2°55.0°
HB'1CB'CC'HC'156.2°65.0°
HB'1CB'CC'HC'263.8°175.0°
HB'2CB'CC'OD'63.8°175.0°
HB'2CB'CC'HC'1176.2°55.1°
HB'2CB'CC'HC'256.2°65.0°
OD'CC'HC'1HC'2122.3°120.0°
CC'OD'CE'CF'175.3°180.0°
CC'OD'CE'HE'164.8°60.1°
CC'OD'CE'HE'255.3°60.0°
HC'1CC'OD'CE'76.6°60.0°
HC'2CC'OD'CE'43.4°60.0°
OD'CE'CF'HE'1120.0°120.0°
OD'CE'CF'HE'2120.0°120.0°
OD'CE'HE'1HE'2120.0°120.1°
OD'CE'CF'NG'51.0°65.0°
OD'CE'CF'HF'169.0°175.0°
OD'CE'CF'HF'2171.0°55.0°
CF'CE'HE'1HE'2120.0°120.0°
CE'CF'NG'HF'1120.0°120.0°
CE'CF'NG'HF'2120.0°120.0°
CE'CF'HF'1HF'2117.7°120.0°
CE'CF'NG'CI'69.8°66.0°
CE'CF'NG'CJ'164.2°170.0°
HE'1CE'CF'NG'170.9°55.0°
HE'1CE'CF'HF'151.0°65.1°
HE'1CE'CF'HF'269.1°175.0°
HE'2CE'CF'NG'69.0°175.0°
HE'2CE'CF'HF'1171.0°55.0°
HE'2CE'CF'HF'250.9°65.0°
NG'CF'HF'1HF'2117.7°120.0°
CF'NG'CI'CJ'129.2°124.0°
CF'NG'CI'HI'1180.0°60.0°
CF'NG'CI'HI'260.0°180.0°
CF'NG'CI'HI'360.0°60.0°
CF'NG'CJ'HJ'1180.0°60.0°
CF'NG'CJ'HJ'260.0°180.0°
CF'NG'CJ'HJ'360.0°60.0°
HF'1CF'NG'CI'170.2°54.0°
HF'1CF'NG'CJ'44.2°70.0°
HF'2CF'NG'CI'50.2°174.0°
HF'2CF'NG'CJ'75.8°50.0°
NG'CI'HI'1HI'2120.0°120.0°
NG'CI'HI'1HI'3120.0°120.0°
NG'CI'HI'2HI'3120.0°120.0°
CI'NG'CJ'HJ'151.9°176.0°
CI'NG'CJ'HJ'2171.9°56.0°
CI'NG'CJ'HJ'368.1°64.0°
CJ'NG'CI'HI'150.8°64.0°
CJ'NG'CI'HI'269.2°56.0°
CJ'NG'CI'HI'3170.8°176.0°
NG'CJ'HJ'1HJ'2120.0°120.0°
NG'CJ'HJ'1HJ'3120.0°119.9°
NG'CJ'HJ'2HJ'3120.0°120.0°
HI'1CI'HI'2HI'3120.0°120.0°
HJ'1CJ'HJ'2HJ'3120.0°120.0°
H3'C3'O3'HO3'59.2°61.1°

224931

PDB entries from 2024-09-11

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