English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

3MA

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N9	C4	sing	1.37Å	1.39Å	Aromatic
N9	C8	sing	1.36Å	1.37Å	Aromatic
N9	HN9	sing	0.97Å	1.02Å
C4	N3	sing	1.33Å	1.37Å	Aromatic
C4	C5	doub	1.41Å	1.38Å	Aromatic
N3	CN3	sing	1.46Å	1.45Å
N3	C2	doub	1.32Å	1.34Å	Aromatic
CN3	H31	sing	1.09Å	1.12Å
CN3	H32	sing	1.09Å	1.11Å
CN3	H33	sing	1.09Å	1.12Å
C2	N1	sing	1.32Å	1.34Å	Aromatic
C2	H2	sing	1.08Å	1.10Å
N1	C6	doub	1.33Å	1.33Å	Aromatic
C6	N6	sing	1.38Å	1.32Å
C6	C5	sing	1.41Å	1.43Å	Aromatic
N6	HN61	sing	0.97Å	1.01Å
N6	HN62	sing	0.97Å	1.02Å
C5	N7	sing	1.35Å	1.40Å	Aromatic
N7	C8	doub	1.30Å	1.31Å	Aromatic
C8	H8	sing	1.08Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C4	N9	C8	105.4°	107.4°
C4	N9	HN9	127.8°	126.3°
N9	C4	N3	127.2°	134.9°
N9	C4	C5	106.4°	106.0°
C8	N9	HN9	126.8°	126.3°
N9	C8	N7	114.0°	110.0°
N9	C8	H8	125.0°	125.0°
N3	C4	C5	126.4°	119.1°
C4	N3	CN3	127.3°	119.7°
C4	N3	C2	109.5°	120.6°
C4	C5	C6	117.4°	118.2°
C4	C5	N7	109.8°	107.1°
CN3	N3	C2	123.2°	119.7°
N3	CN3	H31	127.3°	109.5°
N3	CN3	H32	106.0°	109.4°
N3	CN3	H33	106.0°	109.5°
N3	C2	N1	130.3°	122.5°
N3	C2	H2	115.2°	118.7°
H31	CN3	H32	106.0°	109.5°
H31	CN3	H33	105.9°	109.4°
H32	CN3	H33	103.5°	109.5°
N1	C2	H2	114.5°	118.8°
C2	N1	C6	118.7°	121.2°
N1	C6	N6	117.9°	120.8°
N1	C6	C5	117.6°	118.4°
N6	C6	C5	124.5°	120.8°
C6	N6	HN61	118.0°	120.0°
C6	N6	HN62	119.9°	120.0°
C6	C5	N7	132.8°	134.7°
HN61	N6	HN62	122.1°	120.0°
C5	N7	C8	104.4°	109.4°
N7	C8	H8	121.0°	125.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C4	N9	C8	HN9	179.9°	179.8°
N9	C4	N3	C5	179.3°	179.1°
N9	C4	N3	CN3	1.2°	0.7°
N9	C4	N3	C2	179.6°	179.7°
N9	C4	C5	C6	179.9°	179.8°
N9	C4	C5	N7	0.3°	0.3°
C4	N9	C8	N7	0.4°	0.2°
C4	N9	C8	H8	179.5°	179.8°
C8	N9	C4	N3	179.0°	179.4°
C8	N9	C4	C5	0.4°	0.3°
N9	C8	N7	C5	0.2°	0.0°
N9	C8	N7	H8	179.9°	180.0°
HN9	N9	C4	N3	1.0°	0.7°
HN9	N9	C4	C5	179.6°	179.9°
HN9	N9	C8	N7	179.6°	180.0°
HN9	N9	C8	H8	0.4°	0.1°
C4	N3	CN3	C2	179.1°	179.7°
C4	N3	CN3	H31	180.0°	149.7°
C4	N3	CN3	H32	54.7°	90.3°
C4	N3	CN3	H33	54.8°	29.7°
C4	N3	C2	N1	0.9°	0.4°
C4	N3	C2	H2	179.1°	179.7°
N3	C4	C5	C6	0.5°	0.5°
N3	C4	C5	N7	179.1°	179.6°
C5	C4	N3	CN3	178.1°	179.8°
C5	C4	N3	C2	1.1°	0.6°
C4	C5	C6	N1	0.5°	0.2°
C4	C5	C6	N6	178.4°	179.8°
C4	C5	C6	N7	179.4°	179.8°
C4	C5	N7	C8	0.1°	0.2°
N3	CN3	H31	H32	125.3°	120.0°
N3	CN3	H31	H33	125.2°	120.0°
N3	CN3	H32	H33	111.3°	120.0°
CN3	N3	C2	N1	178.3°	180.0°
CN3	N3	C2	H2	1.7°	0.0°
C2	N3	CN3	H31	0.9°	30.0°
C2	N3	CN3	H32	126.2°	90.1°
C2	N3	CN3	H33	124.3°	149.9°
N3	C2	N1	H2	179.9°	179.9°
N3	C2	N1	C6	0.1°	0.1°
H31	CN3	H32	H33	111.2°	120.0°
C2	N1	C6	N6	178.3°	180.0°
C2	N1	C6	C5	0.7°	0.0°
H2	C2	N1	C6	180.0°	180.0°
N1	C6	N6	C5	178.9°	180.0°
N1	C6	N6	HN61	176.5°	0.0°
N1	C6	N6	HN62	2.4°	180.0°
N1	C6	C5	N7	179.9°	179.9°
C6	N6	HN61	HN62	178.9°	180.0°
N6	C6	C5	N7	1.0°	0.1°
C5	C6	N6	HN61	4.6°	180.0°
C5	C6	N6	HN62	176.5°	0.0°
C6	C5	N7	C8	179.5°	180.0°
C5	N7	C8	H8	179.7°	180.0°

225399

PDB entries from 2024-09-25

PDB statistics

PDBj update info

Contact PDBj

numon