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SummaryGeometryRelated PDB entries

3M9

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
F33C30sing1.35Å1.30Å
C29C30doub1.39Å1.35ÅAromatic
C29C28sing1.38Å1.40ÅAromatic
C30C31sing1.39Å1.44ÅAromatic
C28C26doub1.40Å1.47ÅAromatic
C31C32doub1.38Å1.42ÅAromatic
O27C25doub1.21Å1.25Å
C26C32sing1.40Å1.35ÅAromatic
C26C25sing1.48Å1.55Å
C25N24sing1.35Å1.44Å
N24C23sing1.46Å1.45Å
C22C21doub1.36Å1.42ÅAromatic
C22C16sing1.40Å1.46ÅAromatic
C21C20sing1.39Å1.40ÅAromatic
C23C09sing1.51Å1.56Å
C17C16doub1.41Å1.47ÅAromatic
C17C18sing1.36Å1.41ÅAromatic
C16C15sing1.42Å1.38ÅAromatic
C18C13doub1.39Å1.41ÅAromatic
C20C19doub1.36Å1.42ÅAromatic
C09C10doub1.35Å1.44ÅAromatic
C09N02sing1.35Å1.38ÅAromatic
C10N11sing1.34Å1.36ÅAromatic
C15C19sing1.41Å1.45ÅAromatic
C15C14doub1.41Å1.45ÅAromatic
C13C14sing1.36Å1.40ÅAromatic
C13C03sing1.51Å1.51Å
N02C01sing1.47Å1.42Å
N02N12sing1.29Å1.32ÅAromatic
N11N12doub1.29Å1.31ÅAromatic
C01C03sing1.53Å1.50Å
C01C04sing1.53Å1.51Å
C04C05sing1.51Å1.53Å
C05N06sing1.35Å1.37Å
C05O07doub1.21Å1.23Å
N06O08sing1.42Å1.33Å
C01H1sing1.09Å1.10Å
C10H2sing1.08Å1.08Å
C23H3sing1.09Å1.10Å
C23H4sing1.09Å1.10Å
N24H5sing0.97Å1.00Å
C28H6sing1.08Å1.08Å
C29H7sing1.08Å1.08Å
C31H8sing1.08Å1.08Å
C32H9sing1.08Å1.08Å
C03H10sing1.09Å1.10Å
C03H11sing1.09Å1.10Å
C14H12sing1.08Å1.08Å
C17H13sing1.08Å1.08Å
C18H14sing1.08Å1.08Å
C19H15sing1.08Å1.08Å
C20H16sing1.08Å1.08Å
C21H17sing1.08Å1.08Å
C22H18sing1.08Å1.08Å
C04H19sing1.09Å1.10Å
C04H20sing1.09Å1.10Å
N06H21sing0.97Å1.00Å
O08H22sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
F33C30C29117.7°119.9°
F33C30C31118.2°119.9°
C30C29C28118.9°120.1°
C29C30C31124.1°120.2°
C30C29H7120.6°119.9°
C29C28C26118.4°119.9°
C29C28H6120.8°120.1°
C28C29H7120.5°120.0°
C30C31C32116.7°120.1°
C30C31H8121.6°120.0°
C28C26C32121.8°119.8°
C28C26C25115.7°120.1°
C26C28H6120.8°120.1°
C31C32C26120.1°119.9°
C32C31H8121.6°119.9°
C31C32H9119.9°120.0°
O27C25C26113.7°120.0°
O27C25N24116.4°120.0°
C32C26C25122.5°120.1°
C26C32H9119.9°120.1°
C26C25N24129.9°120.0°
C25N24C23129.5°120.0°
C25N24H5115.2°120.0°
N24C23C09112.9°109.5°
N24C23H3108.6°109.5°
N24C23H4108.6°109.5°
C23N24H5115.3°120.0°
C21C22C16119.7°119.6°
C22C21C20120.2°121.0°
C22C21H17119.9°119.5°
C21C22H18120.1°120.2°
C22C16C17119.6°121.3°
C22C16C15119.5°119.3°
C16C22H18120.1°120.2°
C21C20C19120.6°121.0°
C21C20H16119.7°119.5°
C20C21H17119.9°119.5°
C23C09C10126.5°126.9°
C23C09N02129.8°126.9°
C09C23H3108.6°109.4°
C09C23H4108.6°109.4°
C16C17C18118.5°119.7°
C17C16C15120.9°119.3°
C16C17H13120.7°120.2°
C17C18C13119.9°121.0°
C18C17H13120.7°120.2°
C17C18H14120.0°119.5°
C16C15C19120.8°119.3°
C16C15C14119.5°119.4°
C18C13C14121.6°121.1°
C18C13C03121.4°119.5°
C13C18H14120.1°119.5°
C20C19C15119.2°119.7°
C20C19H15120.4°120.2°
C19C20H16119.7°119.5°
C10C09N02103.7°106.2°
C09C10N11107.2°106.5°
C09C10H2126.4°126.7°
C09N02C01125.6°125.9°
C09N02N12109.6°108.3°
C10N11N12108.6°108.9°
N11C10H2126.4°126.8°
C19C15C14119.7°121.3°
C15C19H15120.4°120.1°
C15C14C13119.6°119.6°
C15C14H12120.2°120.2°
C14C13C03116.9°119.5°
C13C14H12120.2°120.2°
C13C03C01112.4°109.4°
C13C03H10108.7°109.4°
C13C03H11108.7°109.5°
C01N02N12124.8°125.9°
N02C01C03119.8°109.5°
N02C01C04117.7°109.5°
N02C01H1103.2°109.5°
N02N12N11110.9°110.2°
C03C01C04108.6°109.4°
C03C01H1102.3°109.5°
C01C03H10108.7°109.5°
C01C03H11108.7°109.5°
C01C04C05122.7°109.5°
C04C01H1102.2°109.4°
C01C04H19106.1°109.5°
C01C04H20106.0°109.5°
C04C05N06106.8°120.0°
C04C05O07132.5°120.0°
C05C04H19106.1°109.5°
C05C04H20106.1°109.5°
N06C05O07120.7°120.0°
C05N06O08117.6°120.0°
C05N06H21121.2°120.0°
O08N06H21121.2°120.0°
N06O08H22109.5°113.9°
H3C23H4109.5°109.4°
H10C03H11109.5°109.5°
H19C04H20109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
F33C30C29C31179.3°180.0°
F33C30C29C28179.1°180.0°
F33C30C31C32179.0°179.9°
F33C30C29H70.9°0.0°
F33C30C31H81.0°0.0°
C30C29C28H7180.0°180.0°
C30C29C28C260.4°0.0°
C29C30C31C320.3°0.1°
C30C29C28H6179.6°180.0°
C29C30C31H8179.7°180.0°
C28C29C30C310.3°0.0°
C29C28C26H6180.0°180.0°
C29C28C26C320.7°0.0°
C29C28C26C25179.2°179.7°
C30C31C32H8180.0°179.9°
C30C31C32C260.6°0.2°
C31C30C29H7179.7°180.0°
C30C31C32H9179.4°179.7°
C28C26C32C310.7°0.1°
C28C26C25O2718.3°179.8°
C28C26C32C25178.4°179.7°
C28C26C25N24163.3°0.3°
C26C28C29H7179.6°180.0°
C28C26C32H9179.3°179.8°
C31C32C26H9180.0°179.9°
C31C32C26C25179.2°179.8°
O27C25C26C32160.3°0.1°
O27C25C26N24178.4°180.0°
O27C25N24C23180.0°0.0°
O27C25N24H50.0°180.0°
C32C26C25N2418.1°180.0°
C32C26C28H6179.4°179.9°
C26C32C31H8179.4°179.9°
C26C25N24C231.6°180.0°
C26C25N24H5178.3°0.0°
C25C26C28H60.8°0.3°
C25C26C32H90.8°0.1°
C25N24C23H5180.0°180.0°
C25N24C23C09150.1°180.0°
C25N24C23H329.6°60.0°
C25N24C23H489.4°60.0°
N24C23C09H3120.5°120.0°
N24C23C09H4120.5°120.0°
N24C23C09C1023.1°94.9°
N24C23C09N02158.6°85.0°
N24C23H3H4118.5°120.0°
C21C22C16H18180.0°180.0°
C22C21C20H17180.0°180.0°
C21C22C16C17179.2°180.0°
C21C22C16C150.3°0.0°
C22C21C20C190.7°0.0°
C22C21C20H16179.3°180.0°
C16C22C21C200.7°0.0°
C22C16C17C15179.5°180.0°
C22C16C17C18179.8°179.7°
C22C16C15C190.1°0.1°
C22C16C15C14179.8°180.0°
C22C16C17H130.2°0.0°
C16C22C21H17179.3°180.0°
C21C20C19H16180.0°180.0°
C21C20C19C150.3°0.0°
C21C20C19H15179.7°179.9°
C20C21C22H18179.3°180.0°
C23C09C10N02178.7°179.9°
C23C09C10N11179.1°179.9°
C23C09N02C011.9°0.1°
C23C09N02N12179.1°179.8°
C23C09C10H20.8°0.1°
C09C23H3H4118.4°119.9°
C09C23N24H529.9°0.0°
C16C17C18H13180.0°179.7°
C16C17C18C130.7°0.6°
C17C16C15C19179.6°179.9°
C17C16C15C140.3°0.0°
C16C17C18H14179.3°180.0°
C17C16C22H180.8°0.0°
C18C17C16C150.7°0.3°
C17C18C13H14180.0°179.4°
C17C18C13C140.3°0.6°
C17C18C13C03178.5°179.7°
C16C15C19C200.2°0.1°
C16C15C19C14179.9°179.9°
C16C15C14C130.1°0.0°
C16C15C14H12179.9°180.0°
C15C16C17H13179.2°180.0°
C16C15C19H15179.9°180.0°
C15C16C22H18179.7°179.9°
C18C13C14C150.1°0.3°
C18C13C14C03178.2°179.7°
C18C13C03C0118.9°95.5°
C18C13C03H10101.5°144.5°
C18C13C03H11139.4°24.5°
C18C13C14H12179.9°179.7°
C13C18C17H13179.2°179.7°
C20C19C15H15180.0°179.9°
C20C19C15C14179.8°180.0°
C19C20C21H17179.3°180.0°
C09C10N11H2180.0°180.0°
C10C09N02C01179.5°180.0°
C10C09N02N120.5°0.3°
C09C10N11N120.3°0.3°
C10C09C23H397.4°145.0°
C10C09C23H4143.5°25.1°
N02C09C10N110.5°0.0°
C09N02C01N12178.8°179.7°
C09N02N12N110.4°0.5°
C09N02C01C0397.1°119.7°
C09N02C01C04127.2°120.3°
C09N02C01H115.6°0.3°
N02C09C10H2179.5°180.0°
N02C09C23H380.9°35.1°
N02C09C23H438.2°155.0°
C10N11N12N020.1°0.5°
C19C15C14C13180.0°179.9°
C19C15C14H120.0°0.1°
C15C19C20H16179.7°180.0°
C15C14C13H12180.0°180.0°
C15C14C13C03178.1°180.0°
C14C15C19H150.2°0.1°
C14C13C03C01162.9°84.8°
C14C13C03H1076.7°35.2°
C14C13C03H1142.4°155.2°
C14C13C18H14179.7°180.0°
C13C03C01N02107.3°65.3°
C13C03C01H10120.4°120.0°
C13C03C01H11120.4°120.0°
C13C03C01C04113.5°174.7°
C13C03C01H15.9°54.7°
C13C03H10H11118.7°120.0°
C03C13C14H121.9°0.0°
C03C13C18H141.5°0.3°
C01N02N12N11179.4°179.8°
N02C01C03C04139.2°120.0°
N02C01C03H1113.2°120.1°
N02C01C04H1112.1°120.1°
N02C01C04C0578.4°173.4°
N02C01C03H1013.2°174.7°
N02C01C03H11132.3°54.7°
N02C01C04H19159.8°53.4°
N02C01C04H2043.5°66.6°
N12N02C01C0384.0°59.9°
N12N02C01C0451.6°60.0°
N12N02C01H1163.2°180.0°
N12N11C10H2179.7°179.7°
C03C01C04H1107.7°120.0°
C03C01C04C0561.8°66.6°
C01C03H10H11118.6°120.0°
C03C01C04H1960.0°173.3°
C03C01C04H20176.3°53.4°
C01C04C05H19121.8°120.1°
C01C04C05H20121.8°120.0°
C01C04C05N06156.3°174.5°
C01C04C05O0722.7°5.5°
C04C01C03H10126.0°54.7°
C04C01C03H116.9°65.3°
C01C04H19H20114.0°120.0°
C04C05N06O07179.1°180.0°
C04C05N06O08179.0°180.0°
C05C04C01H1169.5°53.3°
C05C04H19H20114.1°120.0°
C04C05N06H211.0°0.0°
C05N06O08H21180.0°179.9°
N06C05C04H1981.9°65.5°
N06C05C04H2034.5°54.5°
C05N06O08H220.0°180.0°
O07C05N06O080.1°0.0°
O07C05C04H1999.1°114.5°
O07C05C04H20144.5°125.5°
O07C05N06H21179.9°180.0°
H1C01C03H10126.4°65.2°
H1C01C03H11114.5°174.8°
H1C01C04H1947.7°66.7°
H1C01C04H2068.7°173.3°
H3C23N24H5150.4°120.0°
H4C23N24H590.6°120.0°
H6C28C29H70.4°0.0°
H8C31C32H90.6°0.2°
H13C17C18H140.7°0.3°
H15C19C20H160.3°0.1°
H16C20C21H170.7°0.0°
H17C21C22H180.7°0.0°
H21N06O08H22180.0°0.0°

248335

PDB entries from 2026-01-28

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