3KD
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C | C1 | sing | 1.56Å | 1.53Å | |
C | C11 | sing | 1.51Å | 1.50Å | |
C1 | N | sing | 1.48Å | 1.46Å | |
C12 | C11 | doub | 1.30Å | 1.34Å | |
C12 | C13 | sing | 1.50Å | 1.48Å | |
C11 | C10 | sing | 1.52Å | 1.50Å | |
N | C10 | sing | 1.49Å | 1.48Å | |
N | C2 | sing | 1.46Å | 1.47Å | |
O1 | C13 | sing | 1.43Å | 1.42Å | |
C13 | C14 | sing | 1.52Å | 1.51Å | |
C10 | C9 | sing | 1.54Å | 1.52Å | |
C2 | C3 | sing | 1.52Å | 1.51Å | |
C9 | C14 | sing | 1.52Å | 1.50Å | |
C9 | C8 | sing | 1.51Å | 1.48Å | |
C14 | O | sing | 1.43Å | 1.41Å | |
C3 | C8 | sing | 1.39Å | 1.40Å | Aromatic |
C3 | C4 | doub | 1.40Å | 1.39Å | Aromatic |
C8 | C7 | doub | 1.39Å | 1.39Å | Aromatic |
C4 | C5 | sing | 1.39Å | 1.38Å | Aromatic |
C7 | C6 | sing | 1.39Å | 1.37Å | Aromatic |
C5 | C6 | doub | 1.40Å | 1.37Å | Aromatic |
C5 | O3 | sing | 1.35Å | 1.38Å | |
C6 | O2 | sing | 1.35Å | 1.38Å | |
O3 | C15 | sing | 1.44Å | 1.43Å | |
O2 | C15 | sing | 1.44Å | 1.43Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
C1 | H2 | sing | 1.09Å | 1.10Å | |
C2 | H3 | sing | 1.09Å | 1.10Å | |
C2 | H4 | sing | 1.09Å | 1.10Å | |
C4 | H5 | sing | 1.08Å | 1.08Å | |
C7 | H6 | sing | 1.08Å | 1.08Å | |
C9 | H7 | sing | 1.09Å | 1.10Å | |
C10 | H8 | sing | 1.09Å | 1.10Å | |
C12 | H9 | sing | 1.08Å | 1.08Å | |
C13 | H10 | sing | 1.09Å | 1.10Å | |
C14 | H11 | sing | 1.09Å | 1.10Å | |
C15 | H12 | sing | 1.09Å | 1.10Å | |
C15 | H13 | sing | 1.09Å | 1.10Å | |
O1 | H14 | sing | 0.97Å | 0.95Å | |
C | H16 | sing | 1.09Å | 1.10Å | |
C | H17 | sing | 1.09Å | 1.10Å | |
O | H18 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C1 | C | C11 | 104.1° | 105.3° |
C | C1 | N | 104.3° | 104.0° |
C | C1 | H1 | 110.8° | 110.5° |
C | C1 | H2 | 110.7° | 110.7° |
C1 | C | H16 | 110.8° | 110.4° |
C1 | C | H17 | 110.8° | 110.3° |
C | C11 | C12 | 128.7° | 133.3° |
C | C11 | C10 | 106.8° | 104.5° |
C11 | C | H16 | 110.8° | 110.3° |
C11 | C | H17 | 110.8° | 110.3° |
C1 | N | C10 | 103.6° | 101.7° |
C1 | N | C2 | 118.6° | 116.4° |
N | C1 | H1 | 110.7° | 110.5° |
N | C1 | H2 | 110.7° | 110.6° |
C11 | C12 | C13 | 120.8° | 122.7° |
C12 | C11 | C10 | 124.0° | 122.2° |
C11 | C12 | H9 | 119.6° | 118.6° |
C12 | C13 | O1 | 107.2° | 108.4° |
C12 | C13 | C14 | 114.1° | 114.9° |
C13 | C12 | H9 | 119.6° | 118.6° |
C12 | C13 | H10 | 109.3° | 108.4° |
C11 | C10 | N | 103.0° | 104.4° |
C11 | C10 | C9 | 103.9° | 107.4° |
C11 | C10 | H8 | 114.0° | 113.2° |
C10 | N | C2 | 97.4° | 106.5° |
N | C10 | C9 | 106.8° | 105.9° |
N | C10 | H8 | 114.4° | 112.7° |
N | C2 | C3 | 110.8° | 110.3° |
N | C2 | H3 | 109.1° | 109.3° |
N | C2 | H4 | 109.2° | 109.3° |
O1 | C13 | C14 | 107.2° | 108.4° |
O1 | C13 | H10 | 110.1° | 108.1° |
C13 | O1 | H14 | 109.5° | 114.0° |
C13 | C14 | C9 | 108.7° | 111.3° |
C13 | C14 | O | 109.2° | 109.1° |
C14 | C13 | H10 | 108.8° | 108.4° |
C13 | C14 | H11 | 111.2° | 109.1° |
C10 | C9 | C14 | 106.4° | 106.9° |
C10 | C9 | C8 | 102.6° | 105.5° |
C10 | C9 | H7 | 111.6° | 110.4° |
C9 | C10 | H8 | 113.6° | 112.5° |
C2 | C3 | C8 | 119.2° | 123.1° |
C2 | C3 | C4 | 120.5° | 116.3° |
C3 | C2 | H3 | 109.2° | 109.3° |
C3 | C2 | H4 | 109.1° | 109.3° |
C14 | C9 | C8 | 111.4° | 114.7° |
C9 | C14 | O | 103.0° | 109.1° |
C14 | C9 | H7 | 112.0° | 109.6° |
C9 | C14 | H11 | 111.4° | 109.2° |
C9 | C8 | C3 | 121.1° | 119.9° |
C9 | C8 | C7 | 118.3° | 118.3° |
C8 | C9 | H7 | 112.3° | 109.7° |
O | C14 | H11 | 112.9° | 109.0° |
C14 | O | H18 | 109.5° | 114.0° |
C8 | C3 | C4 | 120.2° | 120.6° |
C3 | C8 | C7 | 120.6° | 121.7° |
C3 | C4 | C5 | 118.1° | 118.1° |
C3 | C4 | H5 | 121.0° | 121.0° |
C8 | C7 | C6 | 118.2° | 117.8° |
C8 | C7 | H6 | 120.9° | 121.1° |
C4 | C5 | C6 | 121.3° | 121.0° |
C4 | C5 | O3 | 128.7° | 130.3° |
C5 | C4 | H5 | 121.0° | 120.9° |
C7 | C6 | C5 | 121.7° | 120.8° |
C7 | C6 | O2 | 128.2° | 130.4° |
C6 | C7 | H6 | 120.9° | 121.1° |
C6 | C5 | O3 | 110.0° | 108.8° |
C5 | C6 | O2 | 109.9° | 108.8° |
C5 | O3 | C15 | 105.6° | 105.6° |
C6 | O2 | C15 | 105.5° | 105.5° |
O3 | C15 | O2 | 108.4° | 104.0° |
O3 | C15 | H12 | 109.8° | 110.5° |
O3 | C15 | H13 | 109.7° | 110.7° |
O2 | C15 | H12 | 109.7° | 110.5° |
O2 | C15 | H13 | 109.8° | 110.5° |
H1 | C1 | H2 | 109.5° | 110.4° |
H3 | C2 | H4 | 109.5° | 109.3° |
H12 | C15 | H13 | 109.5° | 110.4° |
H16 | C | H17 | 109.5° | 110.3° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C1 | C | C11 | H16 | 119.1° | 119.0° |
C1 | C | C11 | H17 | 119.2° | 118.9° |
C | C1 | N | H1 | 119.2° | 118.6° |
C | C1 | N | H2 | 119.2° | 118.9° |
C1 | C | C11 | C12 | 169.6° | 171.8° |
C1 | C | C11 | C10 | 3.5° | 5.1° |
C | C1 | N | C10 | 40.0° | 40.8° |
C | C1 | N | C2 | 146.4° | 156.1° |
C | C1 | H1 | H2 | 122.4° | 122.9° |
C1 | C | H16 | H17 | 122.5° | 122.1° |
C11 | C | C1 | N | 22.2° | 22.2° |
C | C11 | C12 | C10 | 172.0° | 176.4° |
C | C11 | C12 | C13 | 168.0° | 174.5° |
C | C11 | C10 | N | 27.6° | 30.6° |
C | C11 | C10 | C9 | 138.9° | 142.7° |
C11 | C | C1 | H1 | 97.0° | 140.7° |
C11 | C | C1 | H2 | 141.4° | 96.6° |
C | C11 | C10 | H8 | 97.0° | 92.4° |
C | C11 | C12 | H9 | 12.1° | 5.4° |
C11 | C | H16 | H17 | 122.5° | 122.0° |
C1 | N | C10 | C11 | 41.9° | 44.8° |
C1 | N | C10 | C2 | 121.9° | 122.4° |
C1 | N | C10 | C9 | 151.0° | 158.0° |
C1 | N | C2 | C3 | 171.0° | 162.3° |
N | C1 | H1 | H2 | 122.4° | 122.6° |
C1 | N | C2 | H3 | 50.8° | 77.5° |
C1 | N | C2 | H4 | 68.8° | 42.0° |
C1 | N | C10 | H8 | 82.4° | 78.5° |
N | C1 | C | H16 | 96.9° | 96.8° |
N | C1 | C | H17 | 141.4° | 141.1° |
C11 | C12 | C13 | H9 | 180.0° | 179.9° |
C12 | C11 | C10 | N | 145.9° | 146.7° |
C11 | C12 | C13 | O1 | 114.3° | 123.0° |
C11 | C12 | C13 | C14 | 4.3° | 1.6° |
C12 | C11 | C10 | C9 | 34.6° | 34.6° |
C12 | C11 | C10 | H8 | 89.5° | 90.3° |
C11 | C12 | C13 | H10 | 126.4° | 119.8° |
C12 | C11 | C | H16 | 50.5° | 52.7° |
C12 | C11 | C | H17 | 71.2° | 69.3° |
C13 | C12 | C11 | C10 | 4.0° | 1.9° |
C12 | C13 | O1 | C14 | 123.0° | 125.3° |
C12 | C13 | O1 | H10 | 118.8° | 117.3° |
C12 | C13 | C14 | H10 | 122.3° | 121.4° |
C12 | C13 | C14 | C9 | 36.9° | 29.0° |
C12 | C13 | C14 | O | 74.8° | 91.4° |
C12 | C13 | C14 | H11 | 159.9° | 149.5° |
C12 | C13 | O1 | H14 | 180.0° | 60.0° |
C11 | C10 | N | C9 | 109.1° | 113.2° |
C11 | C10 | N | H8 | 124.3° | 123.3° |
C11 | C10 | N | C2 | 163.8° | 167.2° |
C11 | C10 | C9 | H8 | 124.4° | 125.3° |
C11 | C10 | C9 | C14 | 65.8° | 62.4° |
C11 | C10 | C9 | C8 | 177.1° | 175.1° |
C11 | C10 | C9 | H7 | 56.6° | 56.7° |
C10 | C11 | C12 | H9 | 176.0° | 178.2° |
C10 | C11 | C | H16 | 122.6° | 124.1° |
C10 | C11 | C | H17 | 115.7° | 113.8° |
N | C10 | C9 | H8 | 127.1° | 123.6° |
C10 | N | C2 | C3 | 61.0° | 49.7° |
N | C10 | C9 | C14 | 174.3° | 173.6° |
N | C10 | C9 | C8 | 68.6° | 64.0° |
C10 | N | C1 | H1 | 79.3° | 159.4° |
C10 | N | C1 | H2 | 159.1° | 78.1° |
C10 | N | C2 | H3 | 59.2° | 169.9° |
C10 | N | C2 | H4 | 178.8° | 70.5° |
N | C10 | C9 | H7 | 51.9° | 54.5° |
C2 | N | C10 | C9 | 87.1° | 79.6° |
N | C2 | C3 | H3 | 120.2° | 120.2° |
N | C2 | C3 | H4 | 120.2° | 120.3° |
N | C2 | C3 | C8 | 27.8° | 12.0° |
N | C2 | C3 | C4 | 156.5° | 168.0° |
C2 | N | C1 | H1 | 27.2° | 85.4° |
C2 | N | C1 | H2 | 94.5° | 37.2° |
N | C2 | H3 | H4 | 119.4° | 119.6° |
C2 | N | C10 | H8 | 39.4° | 43.9° |
O1 | C13 | C14 | H10 | 119.1° | 117.2° |
O1 | C13 | C14 | C9 | 81.7° | 92.4° |
O1 | C13 | C14 | O | 166.6° | 147.2° |
O1 | C13 | C12 | H9 | 65.7° | 56.9° |
O1 | C13 | C14 | H11 | 41.3° | 28.1° |
C13 | C14 | C9 | C10 | 69.9° | 61.1° |
C13 | C14 | C9 | O | 115.8° | 120.4° |
C13 | C14 | C9 | H11 | 122.9° | 120.5° |
C13 | C14 | C9 | C8 | 179.0° | 177.7° |
C13 | C14 | O | H11 | 124.3° | 119.1° |
C13 | C14 | C9 | H7 | 52.3° | 58.5° |
C14 | C13 | C12 | H9 | 175.7° | 178.3° |
C14 | C13 | O1 | H14 | 57.0° | 174.7° |
C13 | C14 | O | H18 | 180.0° | 58.2° |
C10 | C9 | C14 | C8 | 111.1° | 116.6° |
C10 | C9 | C14 | H7 | 122.2° | 119.6° |
C10 | C9 | C8 | H7 | 120.0° | 118.9° |
C10 | C9 | C14 | O | 45.9° | 59.3° |
C10 | C9 | C8 | C3 | 28.1° | 25.7° |
C10 | C9 | C8 | C7 | 154.6° | 154.4° |
C10 | C9 | C14 | H11 | 167.3° | 178.4° |
C2 | C3 | C8 | C9 | 10.2° | 0.3° |
C2 | C3 | C8 | C4 | 175.8° | 179.9° |
C2 | C3 | C8 | C7 | 172.6° | 179.9° |
C2 | C3 | C4 | C5 | 174.1° | 179.9° |
C3 | C2 | H3 | H4 | 119.4° | 119.6° |
C2 | C3 | C4 | H5 | 5.9° | 0.1° |
C14 | C9 | C8 | H7 | 126.5° | 123.8° |
C9 | C14 | O | H11 | 120.3° | 119.1° |
C14 | C9 | C8 | C3 | 141.6° | 143.1° |
C14 | C9 | C8 | C7 | 41.1° | 37.1° |
C14 | C9 | C10 | H8 | 58.7° | 62.9° |
C9 | C14 | C13 | H10 | 159.3° | 150.4° |
C9 | C14 | O | H18 | 64.5° | 180.0° |
C8 | C9 | C14 | O | 65.2° | 57.2° |
C9 | C8 | C3 | C7 | 177.2° | 179.8° |
C9 | C8 | C3 | C4 | 174.0° | 179.8° |
C9 | C8 | C7 | C6 | 175.1° | 179.8° |
C9 | C8 | C7 | H6 | 4.9° | 0.3° |
C8 | C9 | C10 | H8 | 58.5° | 59.6° |
C8 | C9 | C14 | H11 | 56.1° | 61.8° |
O | C14 | C9 | H7 | 168.1° | 179.0° |
O | C14 | C13 | H10 | 47.5° | 30.0° |
C8 | C3 | C4 | C5 | 1.6° | 0.0° |
C3 | C8 | C7 | C6 | 2.2° | 0.0° |
C8 | C3 | C2 | H3 | 92.4° | 132.2° |
C8 | C3 | C2 | H4 | 148.0° | 108.2° |
C8 | C3 | C4 | H5 | 178.4° | 179.9° |
C3 | C8 | C7 | H6 | 177.8° | 179.9° |
C3 | C8 | C9 | H7 | 91.9° | 93.2° |
C4 | C3 | C8 | C7 | 3.2° | 0.1° |
C3 | C4 | C5 | H5 | 180.0° | 180.0° |
C3 | C4 | C5 | C6 | 0.9° | 0.0° |
C3 | C4 | C5 | O3 | 179.1° | 179.9° |
C4 | C3 | C2 | H3 | 83.3° | 47.8° |
C4 | C3 | C2 | H4 | 36.3° | 71.7° |
C8 | C7 | C6 | H6 | 180.0° | 179.9° |
C8 | C7 | C6 | C5 | 0.3° | 0.1° |
C8 | C7 | C6 | O2 | 174.2° | 180.0° |
C7 | C8 | C9 | H7 | 85.4° | 86.7° |
C4 | C5 | C6 | C7 | 1.9° | 0.1° |
C4 | C5 | C6 | O3 | 180.0° | 179.9° |
C4 | C5 | C6 | O2 | 173.5° | 179.9° |
C4 | C5 | O3 | C15 | 177.9° | 163.5° |
C7 | C6 | C5 | O2 | 175.4° | 180.0° |
C7 | C6 | C5 | O3 | 178.1° | 180.0° |
C7 | C6 | O2 | C15 | 177.0° | 163.4° |
C6 | C5 | O3 | C15 | 2.1° | 16.6° |
C5 | C6 | O2 | C15 | 7.9° | 16.5° |
C6 | C5 | C4 | H5 | 179.1° | 180.0° |
C5 | C6 | C7 | H6 | 179.7° | 180.0° |
O3 | C5 | C6 | O2 | 6.5° | 0.1° |
C5 | O3 | C15 | O2 | 2.8° | 26.0° |
O3 | C5 | C4 | H5 | 0.9° | 0.1° |
C5 | O3 | C15 | H12 | 122.7° | 92.6° |
C5 | O3 | C15 | H13 | 117.0° | 144.7° |
C6 | O2 | C15 | O3 | 6.6° | 26.0° |
O2 | C6 | C7 | H6 | 5.8° | 0.1° |
C6 | O2 | C15 | H12 | 126.4° | 92.7° |
C6 | O2 | C15 | H13 | 113.2° | 144.8° |
O3 | C15 | O2 | H12 | 119.9° | 118.6° |
O3 | C15 | O2 | H13 | 119.8° | 118.8° |
O3 | C15 | H12 | H13 | 120.5° | 122.8° |
O2 | C15 | H12 | H13 | 120.5° | 122.6° |
H1 | C1 | C | H16 | 143.9° | 21.8° |
H1 | C1 | C | H17 | 22.2° | 100.4° |
H2 | C1 | C | H16 | 22.2° | 144.5° |
H2 | C1 | C | H17 | 99.5° | 22.3° |
H7 | C9 | C10 | H8 | 179.0° | 178.0° |
H7 | C9 | C14 | H11 | 70.6° | 62.0° |
H9 | C12 | C13 | H10 | 53.6° | 60.3° |
H10 | C13 | C14 | H11 | 77.8° | 89.0° |
H10 | C13 | O1 | H14 | 61.2° | 57.3° |
H11 | C14 | O | H18 | 55.7° | 60.9° |