3KA

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C2'	C3'	sing	1.55Å	1.52Å
C2'	C1'	sing	1.55Å	1.52Å
O4	C4	doub	1.22Å	1.25Å
C5	C4	sing	1.42Å	1.39Å
C5	C6	doub	1.35Å	1.39Å
C4	N3	sing	1.35Å	1.34Å
C6	N1	sing	1.37Å	1.34Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	C4'	sing	1.54Å	1.52Å
N3	C2	sing	1.35Å	1.34Å
N1	C2	sing	1.34Å	1.41Å
N1	C1'	sing	1.46Å	1.46Å
C2	O2	doub	1.22Å	1.25Å
C1'	O4'	sing	1.44Å	1.44Å
C5'	C4'	sing	1.53Å	1.53Å
C5'	O5'	sing	1.43Å	1.42Å
OP1	P	doub	1.48Å	1.51Å
C4'	O4'	sing	1.44Å	1.43Å
O5'	P	sing	1.61Å	1.60Å
P	OP2	sing	1.61Å	1.51Å
P	O1	sing	1.61Å	1.61Å
N3	H1	sing	0.97Å	1.00Å
C5	H2	sing	1.08Å	1.08Å
C6	H3	sing	1.08Å	1.08Å
C1'	H4	sing	1.09Å	1.10Å
C2'	H5	sing	1.09Å	1.10Å
C2'	H6	sing	1.09Å	1.10Å
C3'	H7	sing	1.09Å	1.10Å
O3'	H8	sing	0.97Å	0.95Å
C4'	H9	sing	1.09Å	1.10Å
C5'	H10	sing	1.09Å	1.10Å
C5'	H11	sing	1.09Å	1.10Å
OP2	H12	sing	0.97Å	0.95Å
O1	H13	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C3'	C2'	C1'	99.8°	102.1°
C2'	C3'	O3'	108.8°	110.5°
C2'	C3'	C4'	103.5°	104.2°
C3'	C2'	H5	111.8°	110.9°
C3'	C2'	H6	111.8°	110.9°
C2'	C3'	H7	112.4°	110.5°
C2'	C1'	N1	118.1°	110.6°
C2'	C1'	O4'	104.8°	103.5°
C2'	C1'	H4	109.0°	110.7°
C1'	C2'	H5	111.8°	110.9°
C1'	C2'	H6	111.8°	110.9°
O4	C4	C5	120.1°	120.3°
O4	C4	N3	119.4°	120.3°
C4	C5	C6	119.0°	119.1°
C5	C4	N3	120.5°	119.4°
C4	C5	H2	120.5°	120.4°
C5	C6	N1	119.5°	119.7°
C6	C5	H2	120.5°	120.5°
C5	C6	H3	120.3°	120.1°
C4	N3	C2	120.9°	120.2°
C4	N3	H1	119.6°	119.9°
C6	N1	C2	120.3°	120.6°
C6	N1	C1'	120.4°	119.7°
N1	C6	H3	120.3°	120.1°
O3'	C3'	C4'	105.2°	110.5°
O3'	C3'	H7	113.8°	110.4°
C3'	O3'	H8	109.5°	114.0°
C3'	C4'	C5'	112.4°	109.9°
C3'	C4'	O4'	104.2°	107.3°
C4'	C3'	H7	112.4°	110.6°
C3'	C4'	H9	109.5°	109.9°
N3	C2	N1	119.7°	121.0°
N3	C2	O2	120.5°	119.5°
C2	N3	H1	119.5°	119.9°
C2	N1	C1'	119.2°	119.7°
N1	C2	O2	119.8°	119.5°
N1	C1'	O4'	104.6°	110.6°
N1	C1'	H4	109.8°	110.6°
C1'	O4'	C4'	110.7°	107.0°
O4'	C1'	H4	110.2°	110.6°
C4'	C5'	O5'	106.8°	109.5°
C5'	C4'	O4'	110.5°	109.9°
C5'	C4'	H9	109.3°	109.9°
C4'	C5'	H10	110.1°	109.4°
C4'	C5'	H11	110.1°	109.5°
C5'	O5'	P	123.6°	123.0°
O5'	C5'	H10	110.1°	109.5°
O5'	C5'	H11	110.1°	109.5°
OP1	P	O5'	111.2°	109.4°
OP1	P	OP2	119.0°	109.5°
OP1	P	O1	108.1°	109.5°
O4'	C4'	H9	110.8°	109.9°
O5'	P	OP2	106.5°	109.5°
O5'	P	O1	103.0°	109.5°
OP2	P	O1	107.8°	109.5°
P	OP2	H12	109.5°	114.0°
P	O1	H13	109.5°	114.0°
H5	C2'	H6	109.5°	110.9°
H10	C5'	H11	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C3'	C2'	C1'	H5	118.4°	118.2°
C3'	C2'	C1'	H6	118.4°	118.2°
C2'	C3'	O3'	C4'	110.3°	114.8°
C2'	C3'	O3'	H7	126.2°	122.5°
C2'	C3'	C4'	H7	121.5°	118.7°
C3'	C2'	C1'	N1	152.3°	155.5°
C3'	C2'	C1'	O4'	36.4°	37.0°
C2'	C3'	C4'	C5'	89.8°	121.5°
C2'	C3'	C4'	O4'	29.9°	2.0°
C3'	C2'	C1'	H4	81.6°	81.6°
C3'	C2'	H5	H6	124.5°	123.7°
C2'	C3'	O3'	H8	180.0°	61.4°
C2'	C3'	C4'	H9	148.5°	117.4°
C2'	C1'	N1	C6	68.6°	115.5°
C1'	C2'	C3'	O3'	71.3°	97.8°
C1'	C2'	C3'	C4'	40.2°	20.9°
C2'	C1'	N1	C2	115.3°	64.7°
C2'	C1'	N1	O4'	116.0°	114.1°
C2'	C1'	N1	H4	125.8°	123.0°
C2'	C1'	O4'	H4	117.1°	118.6°
C2'	C1'	O4'	C4'	19.2°	40.0°
C1'	C2'	H5	H6	124.5°	123.7°
C1'	C2'	C3'	H7	161.7°	139.7°
O4	C4	C5	N3	179.3°	179.8°
O4	C4	C5	C6	179.4°	180.0°
O4	C4	N3	C2	179.3°	179.9°
O4	C4	N3	H1	0.7°	0.1°
O4	C4	C5	H2	0.6°	0.1°
C4	C5	C6	H2	180.0°	179.9°
C4	C5	C6	N1	0.6°	0.1°
C5	C4	N3	C2	0.0°	0.3°
C5	C4	N3	H1	180.0°	179.8°
C4	C5	C6	H3	179.4°	180.0°
C6	C5	C4	N3	0.1°	0.2°
C5	C6	N1	H3	180.0°	179.9°
C5	C6	N1	C2	1.3°	0.3°
C5	C6	N1	C1'	177.4°	179.9°
C4	N3	C2	H1	180.0°	179.9°
C4	N3	C2	N1	0.7°	0.1°
C4	N3	C2	O2	179.6°	180.0°
N3	C4	C5	H2	179.9°	179.7°
C6	N1	C2	N3	1.4°	0.2°
C6	N1	C2	C1'	176.1°	179.8°
C6	N1	C2	O2	179.6°	179.7°
C6	N1	C1'	O4'	47.4°	1.4°
N1	C6	C5	H2	179.4°	180.0°
C6	N1	C1'	H4	165.6°	121.5°
O3'	C3'	C4'	H7	124.4°	122.6°
O3'	C3'	C4'	C5'	156.1°	119.8°
O3'	C3'	C4'	O4'	84.2°	120.7°
O3'	C3'	C2'	H5	47.1°	144.0°
O3'	C3'	C2'	H6	170.3°	20.4°
O3'	C3'	C4'	H9	34.4°	1.2°
C3'	C4'	O4'	C1'	6.7°	26.5°
C3'	C4'	C5'	O4'	116.0°	117.9°
C3'	C4'	C5'	H9	121.8°	121.0°
C3'	C4'	C5'	O5'	164.4°	175.0°
C3'	C4'	O4'	H9	117.7°	119.4°
C4'	C3'	C2'	H5	158.6°	97.3°
C4'	C3'	C2'	H6	78.2°	139.1°
C4'	C3'	O3'	H8	69.7°	176.2°
C3'	C4'	C5'	H10	76.0°	65.0°
C3'	C4'	C5'	H11	44.8°	55.0°
N3	C2	N1	O2	178.9°	179.9°
N3	C2	N1	C1'	177.5°	180.0°
C2	N1	C1'	O4'	128.7°	178.8°
N1	C2	N3	H1	179.2°	180.0°
C2	N1	C6	H3	178.7°	179.8°
C2	N1	C1'	H4	10.5°	58.3°
C1'	N1	C2	O2	3.5°	0.1°
N1	C1'	O4'	H4	118.0°	122.9°
N1	C1'	O4'	C4'	144.1°	158.5°
C1'	N1	C6	H3	2.6°	0.0°
N1	C1'	C2'	H5	89.3°	37.3°
N1	C1'	C2'	H6	33.9°	86.3°
O2	C2	N3	H1	0.3°	0.2°
C1'	O4'	C4'	C5'	114.3°	145.9°
O4'	C1'	C2'	H5	154.8°	81.2°
O4'	C1'	C2'	H6	82.0°	155.2°
C1'	O4'	C4'	H9	124.4°	92.9°
C4'	C5'	O5'	H10	119.6°	120.0°
C4'	C5'	O5'	H11	119.6°	120.1°
C5'	C4'	O4'	H9	121.3°	121.1°
C4'	C5'	O5'	P	174.7°	180.0°
C5'	C4'	C3'	H7	31.7°	2.8°
C4'	C5'	H10	H11	121.2°	120.0°
C5'	O5'	P	OP1	33.5°	55.0°
O5'	C5'	C4'	O4'	79.6°	67.1°
C5'	O5'	P	OP2	164.7°	65.0°
C5'	O5'	P	O1	82.0°	175.0°
O5'	C5'	C4'	H9	42.5°	53.9°
O5'	C5'	H10	H11	121.2°	120.0°
OP1	P	O5'	OP2	131.1°	120.0°
OP1	P	O5'	O1	115.6°	120.0°
OP1	P	OP2	O1	123.4°	120.0°
OP1	P	OP2	H12	0.0°	179.9°
OP1	P	O1	H13	0.0°	60.1°
C4'	O4'	C1'	H4	97.9°	78.6°
O4'	C4'	C3'	H7	151.4°	116.7°
O4'	C4'	C5'	H10	39.9°	52.8°
O4'	C4'	C5'	H11	160.8°	172.8°
O5'	P	OP2	O1	110.0°	120.0°
P	O5'	C5'	H10	65.7°	60.0°
P	O5'	C5'	H11	55.1°	60.0°
O5'	P	OP2	H12	126.6°	60.0°
O5'	P	O1	H13	117.8°	180.0°
OP2	P	O1	H13	129.8°	60.0°
O1	P	OP2	H12	123.4°	60.0°
H2	C5	C6	H3	0.6°	0.1°
H4	C1'	C2'	H5	36.8°	160.2°
H4	C1'	C2'	H6	160.0°	36.6°
H5	C2'	C3'	H7	79.9°	21.5°
H6	C2'	C3'	H7	43.3°	102.1°
H7	C3'	O3'	H8	53.9°	61.1°
H7	C3'	C4'	H9	90.0°	123.8°
H9	C4'	C5'	H10	162.1°	173.9°
H9	C4'	C5'	H11	77.0°	66.1°

Release date:	2015-05-06
Definition date:	2014-09-03
Last modified:	2020-06-17
Release status:	REL
Processing site:	EBI
Derived from:	4WB2