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Summary Geometry Related PDB entries

3GR

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C3	O3	sing	1.43Å	1.47Å
C3	C2	sing	1.53Å	1.57Å
C3	H31	sing	1.09Å	1.10Å
C3	H32	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C2	O2	sing	1.43Å	1.44Å
C2	C1	sing	1.51Å	1.55Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C1	O1	doub	1.21Å	1.27Å
C1	H1	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3	C3	C2	118.7°	109.5°
O3	C3	H31	107.1°	109.5°
O3	C3	H32	107.1°	109.5°
C3	O3	HO3	109.5°	114.0°
C2	C3	H31	107.1°	109.4°
C2	C3	H32	107.1°	109.5°
C3	C2	O2	104.0°	109.5°
C3	C2	C1	117.9°	109.5°
C3	C2	H2	107.1°	109.4°
H31	C3	H32	109.5°	109.5°
O2	C2	C1	111.4°	109.5°
O2	C2	H2	108.8°	109.5°
C2	O2	HO2	109.5°	114.0°
C1	C2	H2	107.4°	109.5°
C2	C1	O1	132.5°	120.0°
C2	C1	H1	113.8°	120.0°
O1	C1	H1	113.7°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3	C3	C2	H31	121.3°	119.9°
O3	C3	C2	H32	121.3°	120.1°
O3	C3	H31	H32	115.8°	120.0°
O3	C3	C2	O2	118.4°	64.9°
O3	C3	C2	C1	117.8°	175.0°
O3	C3	C2	H2	3.3°	55.0°
C2	C3	H31	H32	115.8°	120.0°
C2	C3	O3	HO3	180.0°	180.0°
C3	C2	O2	C1	127.9°	120.0°
C3	C2	O2	H2	113.9°	119.9°
C3	C2	C1	H2	120.9°	119.9°
C3	C2	O2	HO2	180.0°	60.1°
C3	C2	C1	O1	67.4°	120.0°
C3	C2	C1	H1	112.6°	60.0°
H31	C3	O3	HO3	58.7°	60.0°
H31	C3	C2	O2	2.9°	55.0°
H31	C3	C2	C1	120.9°	65.0°
H31	C3	C2	H2	118.0°	175.0°
H32	C3	O3	HO3	58.7°	60.0°
H32	C3	C2	O2	120.3°	175.0°
H32	C3	C2	C1	3.5°	55.0°
H32	C3	C2	H2	124.6°	65.0°
O2	C2	C1	H2	119.0°	120.0°
O2	C2	C1	O1	52.6°	0.0°
O2	C2	C1	H1	127.4°	180.0°
C1	C2	O2	HO2	52.1°	60.0°
C2	C1	O1	H1	180.0°	180.0°
H2	C2	O2	HO2	66.1°	180.0°
H2	C2	C1	O1	171.6°	120.0°
H2	C2	C1	H1	8.4°	60.0°

222415

PDB entries from 2024-07-10

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