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Summary Geometry Related PDB entries

3GL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	1.47Å	1.39Å
CA	C	sing	1.51Å	1.37Å
CA	CB	sing	1.53Å	1.57Å
C	O	doub	1.21Å	1.10Å
CB	CG	sing	1.53Å	1.52Å
CG	OH	sing	1.43Å	1.37Å
CG	CD	sing	1.51Å	1.65Å
CD	OE1	sing	1.34Å	1.14Å
CD	OE2	doub	1.21Å	1.12Å
C	OXT	sing	1.34Å	1.32Å
N	H	sing	1.01Å	1.00Å
N	H2	sing	1.01Å	1.00Å
CA	HA	sing	1.09Å	1.10Å
CB	HB1C	sing	1.09Å	1.10Å
CB	HB2C	sing	1.09Å	1.10Å
CG	HG	sing	1.09Å	1.10Å
OH	HH	sing	0.97Å	0.95Å
OE1	HE1	sing	0.97Å	0.95Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N	CA	C	113.8°	109.5°
N	CA	CB	110.3°	109.4°
CA	N	H	109.5°	111.0°
CA	N	H2	109.4°	111.0°
N	CA	HA	106.5°	109.5°
C	CA	CB	111.4°	109.5°
CA	C	O	116.2°	119.9°
CA	C	OXT	127.5°	120.0°
C	CA	HA	105.3°	109.5°
CA	CB	CG	113.9°	109.5°
CB	CA	HA	109.2°	109.5°
CA	CB	HB1C	108.0°	109.4°
CA	CB	HB2C	107.0°	109.5°
O	C	OXT	116.3°	120.1°
CB	CG	OH	116.4°	109.4°
CB	CG	CD	108.6°	109.4°
CG	CB	HB1C	108.0°	109.5°
CG	CB	HB2C	107.0°	109.5°
CB	CG	HG	107.1°	109.5°
OH	CG	CD	114.4°	109.5°
OH	CG	HG	100.2°	109.5°
CG	OH	HH	109.5°	114.0°
CG	CD	OE1	119.2°	120.0°
CG	CD	OE2	115.0°	120.0°
CD	CG	HG	109.5°	109.5°
OE1	CD	OE2	122.7°	120.0°
CD	OE1	HE1	109.5°	117.1°
C	OXT	HXT	109.5°	117.0°
H	N	H2	109.5°	111.0°
HB1C	CB	HB2C	113.0°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N	CA	C	CB	125.4°	120.0°
N	CA	C	HA	116.3°	120.0°
N	CA	CB	HA	116.7°	120.0°
N	CA	C	O	129.8°	20.0°
N	CA	CB	CG	57.3°	65.0°
N	CA	C	OXT	50.2°	160.1°
CA	N	H	H2	120.0°	124.0°
N	CA	CB	HB1C	62.7°	55.0°
N	CA	CB	HB2C	175.4°	175.0°
C	CA	CB	HA	115.9°	120.0°
CA	C	O	OXT	180.0°	180.0°
C	CA	CB	CG	175.3°	175.0°
C	CA	N	H	179.8°	60.0°
C	CA	N	H2	59.8°	176.0°
C	CA	CB	HB1C	64.7°	65.0°
C	CA	CB	HB2C	57.2°	54.9°
CA	C	OXT	HXT	180.0°	180.0°
CB	CA	C	O	104.8°	100.0°
CA	CB	CG	HB1C	120.0°	120.0°
CA	CB	CG	HB2C	118.1°	120.0°
CA	CB	CG	OH	54.8°	65.1°
CA	CB	CG	CD	174.5°	175.0°
CB	CA	C	OXT	75.2°	80.0°
CB	CA	N	H	54.2°	60.0°
CB	CA	N	H2	174.2°	64.0°
CA	CB	HB1C	HB2C	118.2°	120.0°
CA	CB	CG	HG	56.4°	55.0°
O	C	CA	HA	13.5°	140.0°
O	C	OXT	HXT	0.0°	0.1°
CB	CG	OH	CD	127.9°	119.9°
CB	CG	OH	HG	115.1°	120.0°
CB	CG	CD	HG	116.6°	120.0°
CB	CG	CD	OE1	122.4°	65.1°
CB	CG	CD	OE2	38.2°	115.0°
CG	CB	CA	HA	59.4°	55.0°
CG	CB	HB1C	HB2C	118.2°	120.0°
CB	CG	OH	HH	150.4°	60.0°
OH	CG	CD	HG	111.6°	120.1°
OH	CG	CD	OE1	9.4°	175.0°
OH	CG	CD	OE2	170.0°	4.9°
OH	CG	CB	HB1C	174.8°	175.0°
OH	CG	CB	HB2C	63.3°	55.0°
CG	CD	OE1	OE2	159.1°	179.9°
CD	CG	CB	HB1C	54.5°	55.0°
CD	CG	CB	HB2C	67.4°	65.0°
CD	CG	OH	HH	81.7°	60.0°
CG	CD	OE1	HE1	159.1°	180.0°
OE1	CD	CG	HG	120.9°	54.9°
OE2	CD	CG	HG	78.4°	125.0°
OE2	CD	OE1	HE1	0.0°	0.0°
OXT	C	CA	HA	166.5°	40.0°
H	N	CA	HA	64.2°	180.0°
H2	N	CA	HA	55.8°	56.0°
HA	CA	CB	HB1C	179.4°	175.0°
HA	CA	CB	HB2C	58.7°	65.0°
HB1C	CB	CG	HG	63.6°	65.0°
HB2C	CB	CG	HG	174.4°	175.1°
HG	CG	OH	HH	35.3°	180.0°

221716

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