Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3F5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2doub1.32Å1.39ÅAromatic
N1C4sing1.33Å1.38ÅAromatic
C2N3sing1.32Å1.30ÅAromatic
N3C9doub1.33Å1.36ÅAromatic
C4C8doub1.40Å1.34ÅAromatic
C4N10sing1.39Å1.37Å
N5C6sing1.37Å1.38ÅAromatic
N5C9sing1.38Å1.30ÅAromatic
N5C11sing1.47Å1.44Å
C6N7doub1.31Å1.33ÅAromatic
C6N20sing1.38Å1.34Å
N7C8sing1.36Å1.33ÅAromatic
C8C9sing1.40Å1.39ÅAromatic
C11O12sing1.44Å1.44Å
C11C15sing1.55Å1.50Å
O12C13sing1.44Å1.45Å
C13C14sing1.54Å1.55Å
C13C16sing1.53Å1.52Å
C14C15sing1.55Å1.49Å
C14O19sing1.43Å1.42Å
C15O18sing1.43Å1.45Å
C16O17sing1.43Å1.42Å
O17C22sing1.43Å1.42Å
N20C21sing1.47Å1.50Å
C22C23sing1.51Å1.52Å
C23O24doub1.21Å1.23Å
C23N25sing1.35Å1.31Å
C2H2sing1.08Å1.08Å
N10HN10sing0.97Å1.00Å
N10HN1Asing0.97Å1.00Å
C11H11sing1.09Å1.10Å
C13H13sing1.09Å1.10Å
C14H14sing1.09Å1.10Å
C15H15sing1.09Å1.10Å
C16H16sing1.09Å1.10Å
C16H16Asing1.09Å1.10Å
O18HO18sing0.97Å0.95Å
O19HO19sing0.97Å0.95Å
N20HN20sing0.97Å1.00Å
C21H21sing1.09Å1.10Å
C21H21Asing1.09Å1.10Å
C21H21Bsing1.09Å1.10Å
C22H22sing1.09Å1.10Å
C22H22Asing1.09Å1.10Å
N25HN25sing0.97Å1.00Å
N25HN2Asing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C4120.2°121.2°
N1C2N3120.7°122.4°
N1C2H2119.7°118.8°
N1C4C8118.9°118.5°
N1C4N10121.0°120.8°
C2N3C9120.2°120.7°
N3C2H2119.7°118.8°
N3C9N5131.7°134.8°
N3C9C8120.7°119.1°
C8C4N10120.2°120.8°
C4C8N7132.2°134.5°
C4C8C9119.3°118.2°
C4N10HN10109.5°120.0°
C4N10HN1A109.5°120.0°
C6N5C9108.0°107.5°
C6N5C11126.9°126.2°
N5C6N7108.5°109.7°
N5C6N20123.5°125.2°
C9N5C11124.7°126.3°
N5C9C8107.6°106.1°
N5C11O12107.6°110.4°
N5C11C15112.3°110.4°
N5C11H11107.1°110.4°
N7C6N20128.0°125.1°
C6N7C8107.5°109.4°
C6N20C21119.8°120.0°
C6N20HN20106.2°120.0°
N7C8C9108.3°107.3°
O12C11C15103.5°104.8°
C11O12C13105.4°105.3°
O12C11H11115.4°110.4°
C11C15C14101.9°104.1°
C11C15O18110.2°110.5°
C15C11H11110.9°110.4°
C11C15H15114.0°110.5°
O12C13C14105.7°104.8°
O12C13C16107.0°110.4°
O12C13H13113.7°110.3°
C14C13C16110.3°110.4°
C13C14C15104.0°104.0°
C13C14O19109.1°110.5°
C14C13H13110.7°110.4°
C13C14H14113.4°110.6°
C13C16O17108.0°109.5°
C16C13H13109.4°110.4°
C13C16H16110.0°109.5°
C13C16H16A109.9°109.4°
C15C14O19109.9°110.5°
C14C15O18110.0°110.5°
C15C14H14112.6°110.5°
C14C15H15114.3°110.5°
O19C14H14107.7°110.6°
C14O19HO19109.5°114.0°
O18C15H15106.4°110.6°
C15O18HO18109.5°113.9°
C16O17C22110.9°114.0°
O17C16H16109.9°109.5°
O17C16H16A110.0°109.5°
O17C22C23108.1°109.4°
O17C22H22109.9°109.5°
O17C22H22A110.0°109.5°
C21N20HN20106.1°120.0°
N20C21H21109.5°109.5°
N20C21H21A109.5°109.5°
N20C21H21B109.5°109.4°
C22C23O24120.0°120.0°
C22C23N25120.0°120.0°
C23C22H22110.0°109.5°
C23C22H22A109.9°109.4°
O24C23N25120.0°120.0°
C23N25HN25120.0°120.0°
C23N25HN2A120.0°120.0°
HN10N10HN1A109.5°120.0°
H16C16H16A109.0°109.4°
H21C21H21A109.5°109.5°
H21C21H21B109.5°109.4°
H21AC21H21B109.4°109.5°
H22C22H22A109.0°109.5°
HN25N25HN2A120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C2N3H2180.0°180.0°
N1C2N3C91.6°0.0°
C2N1C4C81.3°0.0°
C2N1C4N10179.6°179.9°
C4N1C2N31.4°0.0°
N1C4C8N10179.1°179.9°
N1C4C8N7178.4°179.9°
N1C4C8C93.6°0.1°
C4N1C2H2178.6°180.0°
N1C4N10HN100.0°0.1°
N1C4N10HN1A120.0°180.0°
C2N3C9N5178.2°180.0°
C2N3C9C80.7°0.0°
N3C9C8C43.4°0.1°
N3C9N5C6179.1°180.0°
N3C9N5C8179.0°180.0°
N3C9N5C116.1°0.0°
N3C9C8N7179.4°179.9°
C9N3C2H2178.3°180.0°
C4C8C9N5175.7°180.0°
C4C8N7C6176.8°180.0°
C4C8N7C9175.2°180.0°
C8C4N10HN10179.1°180.0°
C8C4N10HN1A59.1°0.1°
N10C4C8N72.5°0.0°
N10C4C8C9177.3°180.0°
C4N10HN10HN1A120.0°179.9°
C6N5C9C11173.0°180.0°
N5C6N7N20179.5°180.0°
N5C6N7C82.7°0.0°
C6N5C9C81.9°0.0°
C6N5C11O1242.9°43.6°
C6N5C11C1570.3°71.8°
N5C6N20C21174.8°180.0°
C6N5C11H11167.6°165.9°
N5C6N20HN2054.9°0.1°
C9N5C6N72.9°0.0°
C9N5C6N20177.5°180.0°
N5C9C8N70.2°0.0°
C9N5C11O12128.8°136.5°
C9N5C11C15118.0°108.2°
C9N5C11H114.1°14.2°
C11N5C6N7175.7°180.0°
C11N5C6N204.7°0.1°
C11N5C9C8174.9°180.0°
N5C11O12C15119.0°118.8°
N5C11O12H11119.5°122.3°
N5C11C15H11119.9°122.3°
N5C11O12C13160.8°159.3°
N5C11C15C14159.3°142.8°
N5C11C15O1883.9°98.5°
N5C11C15H1535.7°24.2°
C6N7C8C91.5°0.0°
N7C6N20C215.7°0.0°
N7C6N20HN20125.6°179.9°
N20C6N7C8177.8°179.9°
C6N20C21HN20120.0°179.9°
C6N20C21H21180.0°180.0°
C6N20C21H21A60.0°59.9°
C6N20C21H21B60.0°60.1°
O12C11C15H11124.4°118.8°
C11O12C13C1422.9°40.5°
C11O12C13C16140.5°159.4°
O12C11C15C1443.6°23.9°
O12C11C15O18160.4°142.6°
C11O12C13H1398.6°78.3°
O12C11C15H1580.0°94.7°
C15C11O12C1341.8°40.5°
C11C15C14C1328.4°0.1°
C11C15C14O18116.9°118.7°
C11C15C14H15123.5°118.6°
C11C15C14O1988.3°118.7°
C11C15O18H15124.1°122.6°
C11C15C14H14151.6°118.6°
C11C15O18HO18180.0°179.9°
O12C13C14C16115.3°118.8°
O12C13C14H13123.5°118.8°
O12C13C16H13123.6°122.3°
O12C13C14C154.3°24.0°
O12C13C14O19112.9°142.6°
O12C13C16O1755.1°66.4°
C13O12C11H1179.6°78.4°
O12C13C14H14127.0°94.7°
O12C13C16H1664.9°173.5°
O12C13C16H16A175.1°53.6°
C14C13C16H13121.9°122.3°
C13C14C15O19116.7°118.6°
C13C14C15H14123.1°118.7°
C13C14O19H14123.5°122.7°
C13C14C15O18145.3°118.6°
C14C13C16O1759.4°178.2°
C13C14C15H1595.0°118.6°
C14C13C16H16179.4°58.1°
C14C13C16H16A60.6°61.8°
C13C14O19HO19180.0°180.0°
C16C13C14C15111.0°142.9°
C16C13C14O19131.7°98.6°
C13C16O17H16120.0°120.0°
C13C16O17H16A120.0°120.0°
C13C16O17C22168.7°180.0°
C16C13C14H1411.6°24.2°
C13C16H16H16A120.6°119.9°
C15C14O19H14123.1°122.7°
C14C15O18H15124.3°122.7°
C14C15C11H1180.8°94.9°
C15C14C13H13127.8°94.8°
C14C15O18HO1868.4°65.4°
C15C14O19HO1966.6°65.4°
O19C14C15O1828.6°0.0°
O19C14C13H1310.6°23.8°
O19C14C15H15148.3°122.8°
O18C15C11H1136.0°23.8°
O18C15C14H1491.5°122.7°
C16O17C22C23150.3°180.0°
O17C16C13H13178.7°55.8°
O17C16H16H16A120.6°120.0°
C16O17C22H2289.7°60.0°
C16O17C22H22A30.3°60.0°
O17C22C23H22120.0°120.0°
O17C22C23H22A120.0°120.0°
O17C22C23O2439.4°0.0°
O17C22C23N25139.2°180.0°
C22O17C16H1671.3°60.0°
C22O17C16H16A48.7°60.0°
O17C22H22H22A120.6°120.1°
N20C21H21H21A120.0°120.1°
N20C21H21H21B120.0°120.0°
N20C21H21AH21B120.0°120.0°
C22C23O24N25178.6°179.9°
C23C22H22H22A120.6°120.0°
C22C23N25HN25178.6°0.1°
C22C23N25HN2A1.4°180.0°
O24C23C22H22159.4°119.9°
O24C23C22H22A80.6°120.0°
O24C23N25HN250.0°180.0°
O24C23N25HN2A180.0°0.0°
N25C23C22H2219.2°60.0°
N25C23C22H22A100.8°60.0°
C23N25HN25HN2A180.0°180.0°
H11C11C15H15155.6°146.5°
H13C13C14H14109.5°146.5°
H13C13C16H1658.7°64.2°
H13C13C16H16A61.3°175.8°
H14C14C15H1528.1°0.1°
H14C14O19HO1956.5°57.3°
H15C15O18HO1855.9°57.3°
HN20N20C21H2160.0°0.1°
HN20N20C21H21A180.0°120.0°
HN20N20C21H21B60.0°120.0°
H21C21H21AH21B120.0°120.0°

248636

PDB entries from 2026-02-04

PDB statisticsPDBj update infoContact PDBjnumon