3DU

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O2	C2	doub	1.22Å	1.34Å
C3	C2	sing	1.40Å	1.42Å
C3	C4	doub	1.38Å	1.40Å
C2	N1	sing	1.35Å	1.35Å
O4'	C1'	sing	1.44Å	1.42Å
O4'	C4'	sing	1.44Å	1.45Å
O4	C4	sing	1.36Å	1.37Å
C4	C5	sing	1.41Å	1.41Å
N1	C1'	sing	1.47Å	1.47Å
N1	C6	sing	1.36Å	1.36Å
C1'	C2'	sing	1.54Å	1.53Å
O3'	C3'	sing	1.43Å	1.43Å
C4'	C3'	sing	1.55Å	1.53Å
C4'	C5'	sing	1.53Å	1.51Å
C6	C5	doub	1.35Å	1.40Å
C3'	C2'	sing	1.55Å	1.53Å
C2'	O2'	sing	1.43Å	1.42Å
C5'	O5'	sing	1.43Å	1.42Å
O5'	P	sing	1.61Å	1.59Å
OP3	P	doub	1.48Å	1.50Å
P	OP1	sing	1.61Å	1.53Å
P	OP2	sing	1.61Å	1.53Å
OP1	H1	sing	0.97Å	0.95Å
OP2	H2	sing	0.97Å	0.95Å
C5'	H3	sing	1.09Å	1.10Å
C5'	H4	sing	1.09Å	1.10Å
C4'	H5	sing	1.09Å	1.10Å
C3'	H6	sing	1.09Å	1.10Å
O3'	H7	sing	0.97Å	0.95Å
C2'	H8	sing	1.09Å	1.10Å
O2'	H9	sing	0.97Å	0.95Å
C1'	H10	sing	1.09Å	1.10Å
C3	H11	sing	1.08Å	1.08Å
O4	H12	sing	0.97Å	0.95Å
C5	H13	sing	1.08Å	1.08Å
C6	H14	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O2	C2	C3	118.1°	119.9°
O2	C2	N1	120.5°	119.9°
C2	C3	C4	118.0°	119.1°
C3	C2	N1	121.4°	120.1°
C2	C3	H11	121.0°	120.4°
C3	C4	O4	120.4°	120.5°
C3	C4	C5	120.1°	119.0°
C4	C3	H11	121.0°	120.5°
C2	N1	C1'	120.3°	119.5°
C2	N1	C6	120.9°	121.0°
C1'	O4'	C4'	109.9°	105.3°
O4'	C1'	N1	107.4°	110.4°
O4'	C1'	C2'	106.1°	104.8°
O4'	C1'	H10	110.2°	110.4°
O4'	C4'	C3'	105.9°	104.8°
O4'	C4'	C5'	108.6°	110.4°
O4'	C4'	H5	109.5°	110.4°
O4	C4	C5	119.5°	120.5°
C4	O4	H12	109.5°	114.0°
C4	C5	C6	118.7°	119.8°
C4	C5	H13	120.7°	120.1°
C1'	N1	C6	118.8°	119.5°
N1	C1'	C2'	115.1°	110.3°
N1	C1'	H10	109.3°	110.4°
N1	C6	C5	120.9°	120.9°
N1	C6	H14	119.5°	119.5°
C1'	C2'	C3'	101.4°	104.0°
C1'	C2'	O2'	111.9°	110.5°
C1'	C2'	H8	109.0°	110.6°
C2'	C1'	H10	108.6°	110.4°
O3'	C3'	C4'	109.2°	110.5°
O3'	C3'	C2'	109.0°	110.5°
O3'	C3'	H6	113.0°	110.6°
C3'	O3'	H7	109.5°	114.0°
C3'	C4'	C5'	115.3°	110.4°
C4'	C3'	C2'	102.4°	104.1°
C3'	C4'	H5	108.5°	110.4°
C4'	C3'	H6	111.4°	110.5°
C4'	C5'	O5'	111.6°	109.5°
C4'	C5'	H3	108.9°	109.5°
C4'	C5'	H4	109.0°	109.5°
C5'	C4'	H5	108.8°	110.3°
C6	C5	H13	120.7°	120.1°
C5	C6	H14	119.5°	119.6°
C3'	C2'	O2'	114.3°	110.5°
C2'	C3'	H6	111.4°	110.5°
C3'	C2'	H8	109.2°	110.5°
O2'	C2'	H8	110.7°	110.5°
C2'	O2'	H9	109.5°	114.0°
C5'	O5'	P	121.1°	123.0°
O5'	C5'	H3	108.9°	109.5°
O5'	C5'	H4	108.9°	109.5°
O5'	P	OP3	108.8°	109.4°
O5'	P	OP1	106.9°	109.5°
O5'	P	OP2	105.4°	109.5°
OP3	P	OP1	108.5°	109.5°
OP3	P	OP2	108.8°	109.5°
OP1	P	OP2	118.0°	109.5°
P	OP1	H1	109.5°	114.0°
P	OP2	H2	109.5°	114.0°
H3	C5'	H4	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O2	C2	C3	N1	179.3°	179.9°
O2	C2	C3	C4	179.9°	180.0°
O2	C2	N1	C1'	1.5°	0.0°
O2	C2	N1	C6	179.2°	179.7°
O2	C2	C3	H11	0.2°	0.1°
C2	C3	C4	H11	180.0°	180.0°
C2	C3	C4	O4	179.4°	180.0°
C2	C3	C4	C5	0.1°	0.0°
C3	C2	N1	C1'	179.2°	180.0°
C3	C2	N1	C6	1.5°	0.2°
C4	C3	C2	N1	0.9°	0.0°
C3	C4	O4	C5	179.6°	180.0°
C3	C4	C5	C6	0.0°	0.3°
C3	C4	O4	H12	180.0°	179.9°
C3	C4	C5	H13	179.9°	180.0°
C2	N1	C1'	O4'	119.5°	53.8°
C2	N1	C1'	C6	177.7°	179.7°
C2	N1	C1'	C2'	122.6°	61.6°
C2	N1	C6	C5	1.5°	0.5°
C2	N1	C1'	H10	0.1°	176.1°
N1	C2	C3	H11	179.1°	180.0°
C2	N1	C6	H14	178.6°	179.7°
O4'	C1'	N1	C2'	117.9°	115.4°
O4'	C1'	N1	H10	119.5°	122.3°
O4'	C1'	N1	C6	58.3°	126.5°
O4'	C1'	C2'	H10	118.4°	118.9°
C1'	O4'	C4'	C3'	6.8°	40.5°
C1'	O4'	C4'	C5'	117.6°	159.4°
O4'	C1'	C2'	C3'	33.7°	24.0°
O4'	C1'	C2'	O2'	155.9°	142.6°
C1'	O4'	C4'	H5	123.7°	78.3°
O4'	C1'	C2'	H8	81.3°	94.7°
C4'	O4'	C1'	N1	140.7°	159.3°
C4'	O4'	C1'	C2'	17.1°	40.5°
O4'	C4'	C3'	O3'	87.7°	142.6°
O4'	C4'	C3'	C5'	120.2°	118.9°
O4'	C4'	C3'	H5	117.5°	118.9°
O4'	C4'	C5'	H5	119.1°	122.4°
O4'	C4'	C3'	C2'	27.7°	23.9°
O4'	C4'	C5'	O5'	179.7°	69.6°
O4'	C4'	C5'	H3	59.4°	50.4°
O4'	C4'	C5'	H4	60.0°	170.4°
O4'	C4'	C3'	H6	146.9°	94.7°
C4'	O4'	C1'	H10	100.3°	78.3°
O4	C4	C5	C6	179.5°	179.7°
O4	C4	C3	H11	0.6°	0.1°
O4	C4	C5	H13	0.5°	0.0°
C4	C5	C6	N1	0.7°	0.6°
C4	C5	C6	H13	180.0°	179.7°
C5	C4	C3	H11	179.9°	180.0°
C5	C4	O4	H12	0.4°	0.1°
C4	C5	C6	H14	179.3°	179.7°
N1	C1'	C2'	H10	122.9°	122.3°
C1'	N1	C6	C5	179.2°	179.7°
N1	C1'	C2'	C3'	152.4°	142.8°
N1	C1'	C2'	O2'	85.4°	98.6°
N1	C1'	C2'	H8	37.3°	24.1°
C1'	N1	C6	H14	0.9°	0.0°
C6	N1	C1'	C2'	59.7°	118.2°
N1	C6	C5	H14	180.0°	179.7°
C6	N1	C1'	H10	177.8°	4.1°
N1	C6	C5	H13	179.3°	179.7°
C1'	C2'	C3'	O3'	79.0°	118.6°
C1'	C2'	C3'	C4'	36.6°	0.0°
C1'	C2'	C3'	O2'	120.5°	118.6°
C1'	C2'	C3'	H8	115.0°	118.8°
C1'	C2'	O2'	H8	121.8°	122.8°
C1'	C2'	C3'	H6	155.7°	118.6°
C1'	C2'	O2'	H9	180.0°	176.1°
O3'	C3'	C4'	C2'	115.4°	118.6°
O3'	C3'	C4'	H6	125.4°	122.7°
O3'	C3'	C4'	C5'	152.1°	98.5°
O3'	C3'	C2'	H6	125.3°	122.8°
O3'	C3'	C2'	O2'	41.6°	0.0°
O3'	C3'	C4'	H5	29.8°	23.7°
O3'	C3'	C2'	H8	166.1°	122.6°
C3'	C4'	C5'	H5	122.2°	122.2°
C4'	C3'	C2'	H6	119.1°	118.6°
C4'	C3'	C2'	O2'	157.1°	118.6°
C3'	C4'	C5'	O5'	61.0°	175.0°
C3'	C4'	C5'	H3	59.3°	65.0°
C3'	C4'	C5'	H4	178.7°	55.0°
C4'	C3'	O3'	H7	180.0°	179.9°
C4'	C3'	C2'	H8	78.4°	118.7°
C5'	C4'	C3'	C2'	92.5°	142.8°
C4'	C5'	O5'	H3	120.3°	120.0°
C4'	C5'	O5'	H4	120.3°	120.1°
C4'	C5'	O5'	P	171.3°	179.9°
C4'	C5'	H3	H4	119.1°	120.0°
C5'	C4'	C3'	H6	26.7°	24.2°
C3'	C2'	O2'	H8	123.7°	122.6°
C2'	C3'	C4'	H5	145.2°	95.0°
C2'	C3'	O3'	H7	68.9°	65.4°
C3'	C2'	O2'	H9	65.5°	61.5°
C3'	C2'	C1'	H10	84.7°	94.9°
O2'	C2'	C3'	H6	83.7°	122.8°
O2'	C2'	C1'	H10	37.5°	23.7°
C5'	O5'	P	OP3	72.4°	55.0°
C5'	O5'	P	OP1	44.7°	175.0°
C5'	O5'	P	OP2	171.0°	65.0°
O5'	C5'	H3	H4	119.0°	119.9°
O5'	C5'	C4'	H5	61.2°	52.8°
O5'	P	OP3	OP1	116.1°	120.0°
O5'	P	OP3	OP2	114.4°	120.0°
O5'	P	OP1	OP2	118.4°	120.1°
O5'	P	OP1	H1	117.3°	180.0°
O5'	P	OP2	H2	116.6°	60.0°
P	O5'	C5'	H3	50.9°	59.9°
P	O5'	C5'	H4	68.4°	60.0°
OP3	P	OP1	OP2	124.3°	120.0°
OP3	P	OP1	H1	0.0°	60.1°
OP3	P	OP2	H2	0.0°	180.0°
OP1	P	OP2	H2	124.1°	60.0°
OP2	P	OP1	H1	124.3°	59.9°
H3	C5'	C4'	H5	178.5°	172.8°
H4	C5'	C4'	H5	59.1°	67.3°
H5	C4'	C3'	H6	95.6°	146.4°
H6	C3'	O3'	H7	55.5°	57.3°
H6	C3'	C2'	H8	40.8°	0.1°
H8	C2'	O2'	H9	58.2°	61.2°
H8	C2'	C1'	H10	160.3°	146.4°
H13	C5	C6	H14	0.7°	0.0°

Release date:	2013-12-18
Definition date:	2013-12-05
Last modified:	2020-06-17
Release status:	REL
Processing site:	RCSB
Derived from:	4NT0