3DR
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | P | sing | 1.61Å | 1.61Å | |
| O5' | C5' | sing | 1.43Å | 1.45Å | |
| P | OP1 | doub | 1.48Å | 1.50Å | |
| P | OP2 | sing | 1.61Å | 1.52Å | |
| P | OP3 | sing | 1.61Å | 1.53Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C2' | C3' | sing | 1.54Å | 1.51Å | |
| C2' | H2' | sing | 1.09Å | 1.11Å | |
| C2' | H2'' | sing | 1.09Å | 1.12Å | |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| C5' | H5' | sing | 1.09Å | 1.11Å | |
| C5' | H5'' | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.45Å | 1.45Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | H4'1 | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C1' | H1'1 | sing | 1.09Å | 1.12Å | |
| C1' | H1'2 | sing | 1.09Å | 1.11Å | |
| C3' | O3' | sing | 1.43Å | 1.41Å | |
| C3' | H3' | sing | 1.09Å | 1.11Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | O5' | C5' | 118.0° | 106.8° |
| O5' | P | OP1 | 107.6° | 109.5° |
| O5' | P | OP2 | 105.0° | 109.5° |
| O5' | P | OP3 | 104.0° | 109.5° |
| O5' | C5' | C4' | 109.3° | 109.5° |
| O5' | C5' | H5' | 112.2° | 109.5° |
| O5' | C5' | H5'' | 112.2° | 109.5° |
| OP1 | P | OP2 | 114.2° | 109.4° |
| OP1 | P | OP3 | 113.1° | 109.5° |
| OP2 | P | OP3 | 111.9° | 109.5° |
| P | OP2 | HOP2 | 105.0° | 106.8° |
| P | OP3 | HOP3 | 104.1° | 106.8° |
| C1' | C2' | C3' | 101.5° | 104.1° |
| C1' | C2' | H2' | 115.2° | 110.5° |
| C1' | C2' | H2'' | 115.2° | 110.5° |
| C2' | C1' | O4' | 107.4° | 104.8° |
| C2' | C1' | H1'1 | 113.0° | 110.4° |
| C2' | C1' | H1'2 | 113.0° | 110.4° |
| C3' | C2' | H2' | 115.3° | 110.4° |
| C3' | C2' | H2'' | 115.2° | 110.6° |
| C2' | C3' | C4' | 102.7° | 104.2° |
| C2' | C3' | O3' | 111.6° | 110.5° |
| C2' | C3' | H3' | 113.2° | 110.5° |
| H2' | C2' | H2'' | 95.2° | 110.5° |
| C4' | C5' | H5' | 112.3° | 109.4° |
| C4' | C5' | H5'' | 112.3° | 109.5° |
| C5' | C4' | O4' | 109.6° | 110.3° |
| C5' | C4' | C3' | 117.6° | 110.7° |
| C5' | C4' | H4'1 | 101.6° | 110.4° |
| H5' | C5' | H5'' | 98.2° | 109.5° |
| O4' | C4' | C3' | 102.0° | 104.7° |
| O4' | C4' | H4'1 | 117.4° | 110.3° |
| C4' | O4' | C1' | 109.7° | 105.3° |
| C3' | C4' | H4'1 | 109.4° | 110.3° |
| C4' | C3' | O3' | 111.5° | 110.5° |
| C4' | C3' | H3' | 113.3° | 110.5° |
| O4' | C1' | H1'1 | 113.0° | 110.3° |
| O4' | C1' | H1'2 | 113.0° | 110.4° |
| H1'1 | C1' | H1'2 | 97.4° | 110.4° |
| O3' | C3' | H3' | 104.7° | 110.5° |
| C3' | O3' | HO3' | 111.6° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | P | OP1 | OP2 | 116.2° | 120.0° |
| O5' | P | OP1 | OP3 | 114.3° | 120.0° |
| O5' | P | OP2 | OP3 | 112.2° | 120.0° |
| O5' | P | OP2 | HOP2 | 179.9° | 180.0° |
| O5' | P | OP3 | HOP3 | 180.0° | 60.1° |
| P | O5' | C5' | C4' | 168.6° | 180.0° |
| P | O5' | C5' | H5' | 66.2° | 60.0° |
| P | O5' | C5' | H5'' | 43.3° | 60.0° |
| C5' | O5' | P | OP1 | 52.7° | 60.0° |
| C5' | O5' | P | OP2 | 69.3° | 180.0° |
| C5' | O5' | P | OP3 | 173.0° | 60.0° |
| O5' | C5' | C4' | H5' | 125.2° | 120.1° |
| O5' | C5' | C4' | H5'' | 125.3° | 120.0° |
| O5' | C5' | H5' | H5'' | 118.1° | 120.0° |
| O5' | C5' | C4' | O4' | 60.2° | 61.5° |
| O5' | C5' | C4' | C3' | 176.0° | 176.8° |
| O5' | C5' | C4' | H4'1 | 64.7° | 60.7° |
| OP1 | P | OP2 | OP3 | 130.1° | 120.0° |
| OP1 | P | OP2 | HOP2 | 62.4° | 60.1° |
| OP1 | P | OP3 | HOP3 | 63.5° | 180.0° |
| OP2 | P | OP3 | HOP3 | 67.1° | 60.0° |
| OP3 | P | OP2 | HOP2 | 67.7° | 59.9° |
| C1' | C2' | C3' | H2' | 125.3° | 118.6° |
| C1' | C2' | C3' | H2'' | 125.2° | 118.7° |
| C1' | C2' | H2' | H2'' | 121.1° | 122.7° |
| C2' | C1' | O4' | C4' | 5.9° | 40.4° |
| C1' | C2' | C3' | C4' | 36.4° | 0.0° |
| C2' | C1' | O4' | H1'1 | 125.3° | 118.9° |
| C2' | C1' | O4' | H1'2 | 125.3° | 118.8° |
| C2' | C1' | H1'1 | H1'2 | 118.9° | 122.3° |
| C1' | C2' | C3' | O3' | 83.2° | 118.7° |
| C1' | C2' | C3' | H3' | 158.9° | 118.7° |
| C3' | C2' | H2' | H2'' | 121.1° | 122.7° |
| C2' | C3' | C4' | C5' | 79.5° | 142.7° |
| C2' | C3' | C4' | O4' | 40.4° | 23.9° |
| C2' | C3' | C4' | O3' | 119.7° | 118.7° |
| C2' | C3' | C4' | H3' | 122.5° | 118.7° |
| C2' | C3' | C4' | H4'1 | 165.4° | 94.8° |
| C3' | C2' | C1' | O4' | 19.7° | 24.0° |
| C3' | C2' | C1' | H1'1 | 145.0° | 142.8° |
| C3' | C2' | C1' | H1'2 | 105.5° | 94.9° |
| C2' | C3' | O3' | H3' | 122.9° | 122.6° |
| C2' | C3' | O3' | HO3' | 179.9° | 63.3° |
| H2' | C2' | C3' | C4' | 161.7° | 118.6° |
| H2' | C2' | C1' | O4' | 145.0° | 94.6° |
| H2' | C2' | C1' | H1'1 | 89.7° | 24.2° |
| H2' | C2' | C1' | H1'2 | 19.7° | 146.5° |
| H2' | C2' | C3' | O3' | 42.1° | 122.7° |
| H2' | C2' | C3' | H3' | 75.8° | 0.1° |
| H2'' | C2' | C3' | C4' | 88.8° | 118.7° |
| H2'' | C2' | C1' | O4' | 105.5° | 142.7° |
| H2'' | C2' | C1' | H1'1 | 19.8° | 98.5° |
| H2'' | C2' | C1' | H1'2 | 129.2° | 23.8° |
| H2'' | C2' | C3' | O3' | 151.6° | 0.0° |
| H2'' | C2' | C3' | H3' | 33.7° | 122.5° |
| C4' | C5' | H5' | H5'' | 118.2° | 119.9° |
| C5' | C4' | O4' | C3' | 125.4° | 119.1° |
| C5' | C4' | O4' | H4'1 | 115.2° | 122.2° |
| C5' | C4' | C3' | H4'1 | 115.2° | 122.5° |
| C5' | C4' | O4' | C1' | 96.6° | 159.5° |
| C5' | C4' | C3' | O3' | 160.8° | 98.6° |
| C5' | C4' | C3' | H3' | 43.0° | 24.0° |
| H5' | C5' | C4' | O4' | 65.0° | 178.5° |
| H5' | C5' | C4' | C3' | 50.8° | 63.1° |
| H5' | C5' | C4' | H4'1 | 170.1° | 59.4° |
| H5'' | C5' | C4' | O4' | 174.5° | 58.5° |
| H5'' | C5' | C4' | C3' | 58.7° | 56.8° |
| H5'' | C5' | C4' | H4'1 | 60.6° | 179.3° |
| O4' | C4' | C3' | H4'1 | 124.9° | 118.7° |
| C4' | O4' | C1' | H1'1 | 119.4° | 159.3° |
| C4' | O4' | C1' | H1'2 | 131.2° | 78.4° |
| O4' | C4' | C3' | O3' | 79.3° | 142.6° |
| O4' | C4' | C3' | H3' | 162.9° | 94.9° |
| C3' | C4' | O4' | C1' | 28.8° | 40.4° |
| C4' | C3' | O3' | H3' | 122.9° | 122.6° |
| C4' | C3' | O3' | HO3' | 65.7° | 178.1° |
| H4'1 | C4' | O4' | C1' | 148.2° | 78.3° |
| H4'1 | C4' | C3' | O3' | 45.7° | 23.9° |
| H4'1 | C4' | C3' | H3' | 72.2° | 146.5° |
| O4' | C1' | H1'1 | H1'2 | 118.9° | 122.3° |
| H3' | C3' | O3' | HO3' | 57.2° | 59.3° |
