Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3D5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N08C07sing1.47Å1.48Å
C07C06sing1.53Å1.54Å
C06C05sing1.53Å1.54Å
C05C04sing1.53Å1.54Å
C04C03sing1.53Å1.53Å
C03N09sing1.47Å1.47Å
C03C02sing1.51Å1.55Å
N09C10sing1.47Å1.47Å
C14C15doub1.38Å1.39ÅAromatic
C14C11sing1.38Å1.39ÅAromatic
C15C16sing1.39Å1.39ÅAromatic
C10C11sing1.51Å1.38Å
C02N01sing1.35Å1.34Å
C02O23doub1.21Å1.23Å
C11C12doub1.38Å1.39ÅAromatic
C22N21doub1.32Å1.39ÅAromatic
C22C17sing1.39Å1.39ÅAromatic
C16C17sing1.48Å1.39Å
C16C13doub1.39Å1.39ÅAromatic
N21C20sing1.32Å1.40ÅAromatic
C17C18doub1.40Å1.39ÅAromatic
C12C13sing1.38Å1.39ÅAromatic
C20C19doub1.38Å1.39ÅAromatic
C18C19sing1.39Å1.39ÅAromatic
C18H1sing1.08Å1.08Å
C19H2sing1.08Å1.08Å
C20H3sing1.08Å1.08Å
C22H4sing1.08Å1.08Å
C15H5sing1.08Å1.08Å
C14H6sing1.08Å1.08Å
C13H7sing1.08Å1.08Å
C12H8sing1.08Å1.08Å
C10H9sing1.09Å1.10Å
C10H10sing1.09Å1.10Å
N09H11sing1.01Å1.00Å
C03H13sing1.09Å1.10Å
N01H14sing0.97Å1.00Å
N01H15sing0.97Å1.00Å
C04H16sing1.09Å1.10Å
C04H17sing1.09Å1.10Å
C05H18sing1.09Å1.10Å
C05H19sing1.09Å1.10Å
C06H20sing1.09Å1.10Å
C06H21sing1.09Å1.10Å
C07H22sing1.09Å1.10Å
C07H23sing1.09Å1.10Å
N08H24sing1.01Å1.00Å
N08H25sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N08C07C06114.0°109.5°
N08C07H22108.3°109.4°
N08C07H23108.3°109.4°
C07N08H24109.5°111.0°
C07N08H25109.5°111.0°
C07C06C05108.0°109.5°
C07C06H20109.9°109.4°
C07C06H21109.9°109.5°
C06C07H22108.3°109.5°
C06C07H23108.3°109.5°
C06C05C04112.7°109.5°
C06C05H18108.7°109.5°
C06C05H19108.6°109.5°
C05C06H20109.9°109.5°
C05C06H21109.8°109.5°
C05C04C03108.9°109.5°
C05C04H16109.6°109.5°
C05C04H17109.6°109.5°
C04C05H18108.6°109.4°
C04C05H19108.7°109.5°
C04C03N09110.9°109.4°
C04C03C02112.1°109.5°
C04C03H13108.1°109.5°
C03C04H16109.6°109.4°
C03C04H17109.6°109.5°
N09C03C02108.8°109.4°
C03N09C10104.7°111.0°
C03N09H11110.7°111.0°
N09C03H13108.9°109.5°
C03C02N01115.4°120.0°
C03C02O23120.9°120.0°
C02C03H13107.9°109.5°
N09C10C11112.3°109.5°
N09C10H9108.8°109.5°
N09C10H10108.8°109.5°
C10N09H11110.6°111.0°
C15C14C11119.2°120.1°
C14C15C16119.8°119.9°
C14C15H5120.1°120.0°
C15C14H6120.4°120.0°
C14C11C10120.6°119.9°
C14C11C12120.9°120.2°
C11C14H6120.4°119.9°
C15C16C17120.3°120.1°
C15C16C13120.4°119.8°
C16C15H5120.1°120.1°
C10C11C12118.5°119.9°
C11C10H9108.7°109.5°
C11C10H10108.8°109.5°
N01C02O23123.6°120.0°
C02N01H14120.0°120.0°
C02N01H15120.0°120.0°
C11C12C13119.5°120.1°
C11C12H8120.2°119.9°
N21C22C17118.4°120.6°
C22N21C20121.4°121.9°
N21C22H4120.8°119.7°
C22C17C16120.0°120.6°
C22C17C18120.3°118.9°
C17C22H4120.8°119.6°
C17C16C13119.1°120.1°
C16C17C18119.5°120.5°
C16C13C12120.0°119.9°
C16C13H7120.0°120.0°
N21C20C19119.4°121.0°
N21C20H3120.3°119.5°
C17C18C19121.2°118.3°
C17C18H1119.4°120.9°
C12C13H7120.0°120.1°
C13C12H8120.2°120.0°
C20C19C18119.3°119.3°
C20C19H2120.4°120.4°
C19C20H3120.3°119.5°
C19C18H1119.4°120.9°
C18C19H2120.4°120.3°
H9C10H10109.5°109.4°
H14N01H15120.0°120.0°
H16C04H17109.5°109.5°
H18C05H19109.5°109.5°
H20C06H21109.4°109.5°
H22C07H23109.5°109.4°
H24N08H25109.4°111.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N08C07C06H22120.7°120.0°
N08C07C06H23120.7°120.0°
N08C07C06C05179.0°180.0°
N08C07C06H2059.2°60.0°
N08C07C06H2161.2°60.0°
N08C07H22H23117.9°119.9°
C07N08H24H25120.0°124.0°
C07C06C05H20119.8°119.9°
C07C06C05H21119.8°120.0°
C07C06C05C04179.5°180.0°
C07C06C05H1860.1°60.1°
C07C06C05H1959.0°60.0°
C07C06H20H21120.7°120.0°
C06C07H22H23117.9°120.1°
C06C07N08H24180.0°180.0°
C06C07N08H2560.0°56.0°
C06C05C04H18120.5°120.0°
C06C05C04H19120.5°120.0°
C06C05C04C0360.5°180.0°
C06C05C04H16179.5°60.1°
C06C05C04H1759.4°60.0°
C06C05H18H19118.5°120.0°
C05C06H20H21120.7°120.0°
C05C06C07H2260.3°60.0°
C05C06C07H2358.4°60.0°
C05C04C03H16119.9°120.0°
C05C04C03H17119.9°120.1°
C05C04C03N0960.0°65.0°
C05C04C03C02178.1°175.0°
C05C04C03H1359.3°55.0°
C05C04H16H17120.2°120.1°
C04C05H18H19118.5°120.0°
C04C05C06H2059.7°60.1°
C04C05C06H2160.7°60.0°
C04C03N09C02123.7°120.0°
C04C03N09H13118.9°120.1°
C04C03C02H13119.0°120.0°
C04C03N09C10178.2°155.0°
C04C03C02N0160.0°60.1°
C04C03C02O23122.0°120.0°
C04C03N09H1159.0°31.1°
C03C04H16H17120.3°120.0°
C03C04C05H1860.0°60.1°
C03C04C05H19179.0°60.0°
N09C03C02H13118.0°120.0°
C03N09C10H11119.2°123.9°
C03N09C10C11178.1°180.0°
N09C03C02N0163.1°180.0°
N09C03C02O23115.0°0.1°
C03N09C10H957.7°60.0°
C03N09C10H1061.5°60.0°
N09C03C04H1659.9°175.0°
N09C03C04H17179.9°55.0°
C02C03N09C1058.1°85.0°
C03C02N01O23178.0°179.9°
C02C03N09H11177.3°151.0°
C03C02N01H14178.0°0.0°
C03C02N01H152.0°180.0°
C02C03C04H1661.9°55.0°
C02C03C04H1758.2°64.9°
N09C10C11C1477.6°90.0°
N09C10C11H9120.4°120.0°
N09C10C11H10120.4°120.0°
N09C10C11C12102.9°89.7°
N09C10H9H10118.7°120.0°
C10N09C03H1359.3°35.0°
C15C14C11H6180.0°179.9°
C14C15C16H5180.0°179.9°
C15C14C11C10179.4°180.0°
C15C14C11C120.1°0.3°
C14C15C16C17177.7°180.0°
C14C15C16C133.6°0.2°
C11C14C15C161.0°0.0°
C14C11C10C12179.5°179.7°
C14C11C12C131.3°0.3°
C11C14C15H5179.0°179.9°
C14C11C12H8178.7°179.8°
C14C11C10H9162.0°150.0°
C14C11C10H1042.8°30.0°
C15C16C17C2217.5°179.7°
C15C16C17C13174.2°179.7°
C15C16C17C18168.1°0.3°
C15C16C13C125.0°0.2°
C16C15C14H6179.0°179.9°
C15C16C13H7175.0°179.7°
C10C11C12C13179.2°180.0°
C10C11C14H60.6°0.1°
C10C11C12H80.8°0.1°
C11C10H9H10118.7°120.0°
C11C10N09H1162.7°56.1°
N01C02C03H13178.9°60.0°
C02N01H14H15180.0°180.0°
O23C02C03H133.0°119.9°
O23C02N01H140.0°180.0°
O23C02N01H15180.0°0.1°
C11C12C13C163.8°0.1°
C11C12C13H8180.0°179.9°
C12C11C14H6179.9°179.8°
C11C12C13H7176.2°180.0°
C12C11C10H917.5°30.3°
C12C11C10H10136.7°150.2°
N21C22C17H4180.0°179.7°
N21C22C17C16177.8°179.9°
N21C22C17C183.5°0.6°
C22N21C20C190.3°0.0°
C22N21C20H3179.7°180.0°
C22C17C16C18174.4°179.5°
C22C17C16C13168.3°0.0°
C17C22N21C201.3°0.3°
C22C17C18C194.7°0.5°
C22C17C18H1175.4°179.7°
C17C16C13C12179.2°179.9°
C16C17C18C19179.0°180.0°
C16C17C18H11.0°0.2°
C16C17C22H42.2°0.3°
C17C16C15H52.3°0.1°
C17C16C13H70.8°0.0°
C13C16C17C186.1°179.5°
C16C13C12H7180.0°179.9°
C13C16C15H5176.4°179.8°
C16C13C12H8176.1°180.0°
N21C20C19H3180.0°180.0°
N21C20C19C181.3°0.1°
N21C20C19H2178.7°180.0°
C20N21C22H4178.7°180.0°
C17C18C19C203.5°0.2°
C17C18C19H1180.0°179.8°
C17C18C19H2176.5°179.7°
C18C17C22H4176.5°179.7°
C20C19C18H2180.0°179.9°
C20C19C18H1176.5°180.0°
C18C19C20H3178.7°180.0°
H1C18C19H23.5°0.1°
H2C19C20H31.3°0.1°
H5C15C14H61.0°0.0°
H7C13C12H83.9°0.1°
H9C10N09H11176.9°63.9°
H10C10N09H1157.7°176.1°
H11N09C03H1359.9°89.0°
H13C03C04H16179.2°65.0°
H13C03C04H1760.6°175.1°
H16C04C05H1860.0°180.0°
H16C04C05H1959.0°60.0°
H17C04C05H18179.9°60.0°
H17C04C05H1961.1°180.0°
H18C05C06H20179.8°180.0°
H18C05C06H2159.7°59.9°
H19C05C06H2060.8°59.9°
H19C05C06H21178.8°NaN°
H20C06C07H22179.9°180.0°
H20C06C07H2361.4°60.0°
H21C06C07H2259.5°60.0°
H21C06C07H23178.1°180.0°
H22C07N08H2459.3°59.9°
H22C07N08H2560.7°176.1°
H23C07N08H2459.3°60.0°
H23C07N08H25179.3°64.0°

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon