3AU

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	O5'	sing	1.61Å	1.52Å
P	OP1	doub	1.48Å	1.48Å
P	OP2	sing	1.61Å	1.51Å
N1	C2	sing	1.35Å	1.38Å
N1	C6	sing	1.37Å	1.37Å
N1	C1'	sing	1.46Å	1.46Å
C2	O2	doub	1.22Å	1.26Å
C2	N3	sing	1.35Å	1.38Å
N3	C4	sing	1.35Å	1.37Å
N3	C10	sing	1.46Å	1.46Å
C4	O4	doub	1.22Å	1.26Å
C4	C5	sing	1.42Å	1.40Å
C5	C6	doub	1.35Å	1.40Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C1'	C2'	sing	1.55Å	1.54Å
C1'	O4'	sing	1.44Å	1.44Å
C1'	H1'	sing	1.09Å	1.10Å
C10	C11	sing	1.53Å	1.55Å
C10	H10	sing	1.09Å	1.10Å
C10	H10A	sing	1.09Å	1.10Å
C11	C12	sing	1.53Å	1.56Å
C11	H11	sing	1.09Å	1.10Å
C11	H11A	sing	1.09Å	1.10Å
C12	C13	sing	1.51Å	1.46Å
C12	N40	sing	1.47Å	1.47Å
C12	H12	sing	1.09Å	1.10Å
C13	O30	doub	1.21Å	1.22Å
C13	O31	sing	1.34Å	1.23Å
C2'	O2'	sing	1.43Å	1.43Å
C2'	C3'	sing	1.55Å	1.54Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HO2'	sing	0.97Å	0.95Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	C4'	sing	1.54Å	1.55Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C4'	O4'	sing	1.44Å	1.44Å
C4'	C5'	sing	1.53Å	1.55Å
C4'	H4'	sing	1.09Å	1.10Å
N40	HN40	sing	1.01Å	1.00Å
N40	HN4A	sing	1.01Å	1.00Å
C5'	O5'	sing	1.43Å	1.34Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
P	O11	sing	1.61Å	1.51Å
O31	H18	sing	0.97Å	0.95Å
OP2	H19	sing	0.97Å	0.95Å
O11	H20	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O5'	P	OP1	110.1°	109.5°
O5'	P	OP2	109.2°	109.5°
P	O5'	C5'	125.8°	123.0°
O5'	P	O11	109.0°	109.4°
OP1	P	OP2	109.7°	109.5°
OP1	P	O11	109.7°	109.4°
OP2	P	O11	109.1°	109.5°
P	OP2	H19	109.5°	114.0°
C2	N1	C6	118.6°	120.6°
C2	N1	C1'	121.8°	119.7°
N1	C2	O2	118.9°	119.5°
N1	C2	N3	122.0°	121.0°
C6	N1	C1'	119.6°	119.7°
N1	C6	C5	121.3°	119.7°
N1	C6	H6	119.3°	120.1°
N1	C1'	C2'	111.7°	110.6°
N1	C1'	O4'	114.8°	110.6°
N1	C1'	H1'	102.5°	110.5°
O2	C2	N3	119.1°	119.5°
C2	N3	C4	118.9°	120.3°
C2	N3	C10	121.1°	119.9°
C4	N3	C10	120.0°	119.9°
N3	C4	O4	122.7°	120.3°
N3	C4	C5	120.7°	119.4°
N3	C10	C11	110.8°	109.5°
N3	C10	H10	109.0°	109.5°
N3	C10	H10A	109.1°	109.5°
O4	C4	C5	116.7°	120.3°
C4	C5	C6	118.4°	119.1°
C4	C5	H5	120.8°	120.5°
C6	C5	H5	120.8°	120.4°
C5	C6	H6	119.4°	120.2°
C2'	C1'	O4'	103.7°	103.5°
C2'	C1'	H1'	113.9°	110.6°
C1'	C2'	O2'	112.3°	110.9°
C1'	C2'	C3'	103.6°	102.1°
C1'	C2'	H2'	113.0°	110.9°
O4'	C1'	H1'	110.7°	110.8°
C1'	O4'	C4'	107.9°	107.0°
C11	C10	H10	109.0°	109.5°
C11	C10	H10A	109.0°	109.5°
C10	C11	C12	114.7°	109.5°
C10	C11	H11	107.8°	109.5°
C10	C11	H11A	107.7°	109.5°
H10	C10	H10A	109.9°	109.5°
C12	C11	H11	107.8°	109.5°
C12	C11	H11A	107.8°	109.5°
C11	C12	C13	110.7°	109.4°
C11	C12	N40	111.0°	109.5°
C11	C12	H12	108.0°	109.5°
H11	C11	H11A	111.1°	109.4°
C13	C12	N40	110.7°	109.5°
C13	C12	H12	108.3°	109.5°
C12	C13	O30	121.4°	120.0°
C12	C13	O31	121.3°	120.0°
N40	C12	H12	108.0°	109.5°
C12	N40	HN40	109.5°	111.0°
C12	N40	HN4A	109.5°	111.0°
O30	C13	O31	117.2°	120.0°
C13	O31	H18	109.5°	117.0°
O2'	C2'	C3'	113.5°	110.9°
O2'	C2'	H2'	103.0°	110.8°
C2'	O2'	HO2'	109.5°	114.0°
C3'	C2'	H2'	111.7°	111.0°
C2'	C3'	O3'	112.3°	110.6°
C2'	C3'	C4'	103.7°	104.2°
C2'	C3'	H3'	112.1°	110.5°
O3'	C3'	C4'	111.3°	110.5°
O3'	C3'	H3'	104.7°	110.4°
C3'	O3'	HO3'	109.5°	114.0°
C4'	C3'	H3'	113.1°	110.6°
C3'	C4'	O4'	107.1°	107.3°
C3'	C4'	C5'	113.1°	109.9°
C3'	C4'	H4'	108.9°	109.9°
O4'	C4'	C5'	110.0°	109.9°
O4'	C4'	H4'	112.0°	109.9°
C5'	C4'	H4'	105.8°	110.0°
C4'	C5'	O5'	110.9°	109.5°
C4'	C5'	H5'	109.0°	109.5°
C4'	C5'	H5'A	109.0°	109.5°
HN40	N40	HN4A	109.5°	111.0°
O5'	C5'	H5'	109.0°	109.4°
O5'	C5'	H5'A	109.0°	109.5°
H5'	C5'	H5'A	110.0°	109.4°
P	O11	H20	109.5°	113.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5'	P	OP1	OP2	120.2°	120.0°
O5'	P	OP1	O11	119.9°	120.0°
O5'	P	OP2	O11	119.0°	120.0°
P	O5'	C5'	C4'	177.6°	180.0°
P	O5'	C5'	H5'	62.5°	60.0°
P	O5'	C5'	H5'A	57.6°	59.9°
O5'	P	OP2	H19	120.8°	180.0°
O5'	P	O11	H20	120.6°	60.0°
OP1	P	OP2	O11	120.2°	120.0°
OP1	P	O5'	C5'	62.6°	55.0°
OP1	P	OP2	H19	0.0°	59.9°
OP1	P	O11	H20	0.0°	180.0°
OP2	P	O5'	C5'	57.9°	175.0°
OP2	P	O11	H20	120.2°	59.9°
C2	N1	C6	C1'	178.0°	179.7°
N1	C2	O2	N3	180.0°	179.9°
N1	C2	N3	C4	0.5°	0.0°
N1	C2	N3	C10	178.9°	180.0°
C2	N1	C6	C5	1.4°	0.0°
C2	N1	C6	H6	178.6°	180.0°
C2	N1	C1'	C2'	88.3°	115.0°
C2	N1	C1'	O4'	154.1°	130.9°
C2	N1	C1'	H1'	34.0°	7.8°
C6	N1	C2	O2	179.1°	180.0°
C6	N1	C2	N3	0.8°	0.0°
N1	C6	C5	C4	0.6°	0.0°
N1	C6	C5	H6	180.0°	180.0°
N1	C6	C5	H5	179.3°	180.0°
C6	N1	C1'	C2'	89.7°	65.3°
C6	N1	C1'	O4'	28.0°	48.8°
C6	N1	C1'	H1'	148.1°	171.9°
C1'	N1	C2	O2	1.2°	0.3°
C1'	N1	C2	N3	178.8°	179.7°
C1'	N1	C6	C5	179.4°	179.7°
C1'	N1	C6	H6	0.6°	0.3°
N1	C1'	C2'	O4'	124.1°	118.5°
N1	C1'	C2'	H1'	115.5°	122.8°
N1	C1'	O4'	H1'	115.4°	122.9°
N1	C1'	C2'	O2'	78.3°	86.3°
N1	C1'	C2'	C3'	158.8°	155.6°
N1	C1'	C2'	H2'	37.6°	37.3°
N1	C1'	O4'	C4'	159.8°	158.5°
O2	C2	N3	C4	179.6°	180.0°
O2	C2	N3	C10	1.2°	0.0°
C2	N3	C4	C10	178.4°	180.0°
C2	N3	C4	O4	178.4°	179.9°
C2	N3	C4	C5	1.3°	0.0°
C2	N3	C10	C11	87.8°	90.0°
C2	N3	C10	H10	152.3°	150.0°
C2	N3	C10	H10A	32.2°	30.0°
N3	C4	O4	C5	179.7°	179.9°
N3	C4	C5	C6	0.7°	0.0°
N3	C4	C5	H5	179.3°	180.0°
C4	N3	C10	C11	90.6°	90.0°
C4	N3	C10	H10	29.3°	30.0°
C4	N3	C10	H10A	149.4°	150.0°
C10	N3	C4	O4	0.0°	0.1°
C10	N3	C4	C5	179.7°	180.0°
N3	C10	C11	H10	120.0°	120.0°
N3	C10	C11	H10A	120.0°	120.0°
N3	C10	H10	H10A	119.5°	120.0°
N3	C10	C11	C12	179.4°	180.0°
N3	C10	C11	H11	59.4°	60.0°
N3	C10	C11	H11A	60.6°	60.0°
O4	C4	C5	C6	179.0°	180.0°
O4	C4	C5	H5	1.0°	0.1°
C4	C5	C6	H5	180.0°	179.9°
C4	C5	C6	H6	179.4°	180.0°
H5	C5	C6	H6	0.7°	0.0°
C2'	C1'	O4'	H1'	122.5°	118.6°
C1'	C2'	O2'	C3'	117.2°	112.7°
C1'	C2'	O2'	H2'	121.8°	123.6°
C1'	C2'	C3'	H2'	122.0°	118.2°
C1'	C2'	O2'	HO2'	180.0°	179.9°
C1'	C2'	C3'	O3'	101.1°	97.7°
C1'	C2'	C3'	C4'	19.1°	20.9°
C1'	C2'	C3'	H3'	141.5°	139.7°
C2'	C1'	O4'	C4'	37.7°	40.1°
O4'	C1'	C2'	O2'	157.6°	155.2°
O4'	C1'	C2'	C3'	34.6°	37.1°
O4'	C1'	C2'	H2'	86.5°	81.2°
C1'	O4'	C4'	C3'	25.5°	26.5°
C1'	O4'	C4'	C5'	148.9°	145.9°
C1'	O4'	C4'	H4'	93.8°	92.9°
H1'	C1'	C2'	O2'	37.2°	36.5°
H1'	C1'	C2'	C3'	85.7°	81.6°
H1'	C1'	C2'	H2'	153.2°	160.1°
H1'	C1'	O4'	C4'	84.7°	78.5°
C11	C10	H10	H10A	119.4°	120.0°
C10	C11	C12	H11	120.0°	120.0°
C10	C11	C12	H11A	120.0°	120.0°
C10	C11	H11	H11A	117.8°	120.0°
C10	C11	C12	C13	178.3°	175.0°
C10	C11	C12	N40	58.3°	65.0°
C10	C11	C12	H12	59.9°	55.0°
H10	C10	C11	C12	60.6°	60.0°
H10	C10	C11	H11	179.3°	180.0°
H10	C10	C11	H11A	59.4°	60.0°
H10A	C10	C11	C12	59.4°	60.0°
H10A	C10	C11	H11	60.6°	60.0°
H10A	C10	C11	H11A	179.4°	180.0°
C12	C11	H11	H11A	117.9°	120.0°
C11	C12	C13	N40	123.6°	119.9°
C11	C12	C13	H12	118.2°	120.0°
C11	C12	N40	H12	118.2°	120.0°
C11	C12	C13	O30	88.9°	100.0°
C11	C12	C13	O31	88.7°	80.1°
C11	C12	N40	HN40	180.0°	176.0°
C11	C12	N40	HN4A	60.0°	60.0°
H11	C11	C12	C13	58.3°	55.0°
H11	C11	C12	N40	178.3°	175.0°
H11	C11	C12	H12	60.1°	65.0°
H11A	C11	C12	C13	61.7°	65.0°
H11A	C11	C12	N40	61.7°	55.0°
H11A	C11	C12	H12	179.9°	175.0°
C13	C12	N40	H12	118.4°	120.1°
C12	C13	O30	O31	177.7°	179.9°
C13	C12	N40	HN40	56.6°	64.1°
C13	C12	N40	HN4A	63.4°	60.0°
C12	C13	O31	H18	177.7°	180.0°
N40	C12	C13	O30	34.6°	19.9°
N40	C12	C13	O31	147.7°	160.0°
C12	N40	HN40	HN4A	120.0°	124.0°
H12	C12	C13	O30	152.9°	140.0°
H12	C12	C13	O31	29.5°	39.9°
H12	C12	N40	HN40	61.8°	56.0°
H12	C12	N40	HN4A	178.2°	180.0°
O30	C13	O31	H18	0.0°	0.0°
O2'	C2'	C3'	H2'	115.9°	123.6°
O2'	C2'	C3'	O3'	21.0°	20.4°
O2'	C2'	C3'	C4'	141.2°	139.1°
O2'	C2'	C3'	H3'	96.4°	102.1°
C3'	C2'	O2'	HO2'	62.8°	67.3°
C2'	C3'	O3'	C4'	115.7°	114.8°
C2'	C3'	O3'	H3'	121.8°	122.6°
C2'	C3'	C4'	H3'	121.7°	118.7°
C2'	C3'	O3'	HO3'	180.0°	61.4°
C2'	C3'	C4'	O4'	2.6°	2.0°
C2'	C3'	C4'	C5'	124.0°	121.4°
C2'	C3'	C4'	H4'	118.7°	117.4°
H2'	C2'	O2'	HO2'	58.1°	56.4°
H2'	C2'	C3'	O3'	136.9°	144.0°
H2'	C2'	C3'	C4'	102.9°	97.3°
H2'	C2'	C3'	H3'	19.5°	21.5°
O3'	C3'	C4'	H3'	117.5°	122.5°
O3'	C3'	C4'	O4'	123.5°	120.7°
O3'	C3'	C4'	C5'	115.1°	119.8°
O3'	C3'	C4'	H4'	2.2°	1.3°
C4'	C3'	O3'	HO3'	64.3°	176.2°
C3'	C4'	O4'	C5'	123.4°	119.5°
C3'	C4'	O4'	H4'	119.3°	119.4°
C3'	C4'	C5'	H4'	119.1°	121.1°
C3'	C4'	C5'	O5'	179.2°	175.0°
C3'	C4'	C5'	H5'	59.2°	55.0°
C3'	C4'	C5'	H5'A	60.9°	65.0°
H3'	C3'	O3'	HO3'	58.2°	61.2°
H3'	C3'	C4'	O4'	119.1°	116.7°
H3'	C3'	C4'	C5'	2.4°	2.7°
H3'	C3'	C4'	H4'	119.7°	123.8°
O4'	C4'	C5'	H4'	121.1°	121.1°
O4'	C4'	C5'	O5'	61.1°	67.2°
O4'	C4'	C5'	H5'	178.9°	172.8°
O4'	C4'	C5'	H5'A	58.9°	52.9°
C4'	C5'	O5'	H5'	120.0°	120.0°
C4'	C5'	O5'	H5'A	120.0°	120.0°
C4'	C5'	H5'	H5'A	119.4°	120.0°
H4'	C4'	C5'	O5'	60.1°	53.9°
H4'	C4'	C5'	H5'	59.9°	66.1°
H4'	C4'	C5'	H5'A	179.9°	174.0°
O5'	C5'	H5'	H5'A	119.4°	120.0°
C5'	O5'	P	O11	177.0°	65.0°
O11	P	OP2	H19	120.2°	60.1°

Definition date:	2011-01-18
Last modified:	2021-05-11
Release status:	REL
Processing site:	RCSB
Derived from:	3IZV