3AM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O1P | P | doub | 1.48Å | 1.51Å | |
| P | O2P | sing | 1.61Å | 1.51Å | |
| P | O3P | sing | 1.61Å | 1.51Å | |
| P | O3' | sing | 1.61Å | 1.62Å | |
| O2' | C2' | sing | 1.43Å | 1.42Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| C1' | N9 | sing | 1.46Å | 1.48Å | |
| O4' | C4' | sing | 1.44Å | 1.41Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| N9 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.35Å | Aromatic |
| N7 | C5 | sing | 1.35Å | 1.35Å | Aromatic |
| C5 | C6 | doub | 1.40Å | 1.39Å | Aromatic |
| C5 | C4 | sing | 1.41Å | 1.39Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.33Å | |
| C6 | N1 | sing | 1.33Å | 1.38Å | Aromatic |
| C4 | N3 | doub | 1.33Å | 1.36Å | Aromatic |
| N3 | C2 | sing | 1.32Å | 1.38Å | Aromatic |
| C2 | N1 | doub | 1.32Å | 1.38Å | Aromatic |
| O2P | HO2P | sing | 0.97Å | 0.95Å | |
| O3P | HO3P | sing | 0.97Å | 0.95Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| O5' | HO5' | sing | 0.97Å | 0.95Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N6 | HN6 | sing | 0.97Å | 1.00Å | |
| N6 | HN6A | sing | 0.97Å | 1.00Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 109.3° | 109.5° |
| O1P | P | O3P | 107.9° | 109.5° |
| O1P | P | O3' | 107.5° | 109.5° |
| O2P | P | O3P | 110.4° | 109.5° |
| O2P | P | O3' | 111.0° | 109.5° |
| P | O2P | HO2P | 109.5° | 114.0° |
| O3P | P | O3' | 110.5° | 109.4° |
| P | O3P | HO3P | 109.5° | 114.0° |
| P | O3' | C3' | 125.1° | 123.0° |
| O2' | C2' | C3' | 112.5° | 110.9° |
| O2' | C2' | C1' | 112.6° | 110.9° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| O2' | C2' | H2' | 103.2° | 110.8° |
| C3' | C2' | C1' | 101.9° | 102.1° |
| C2' | C3' | O3' | 109.4° | 110.5° |
| C2' | C3' | C4' | 104.2° | 104.2° |
| C3' | C2' | H2' | 113.6° | 110.9° |
| C2' | C3' | H3' | 112.9° | 110.5° |
| C2' | C1' | O4' | 106.4° | 103.5° |
| C2' | C1' | N9 | 116.5° | 110.7° |
| C1' | C2' | H2' | 113.5° | 110.9° |
| C2' | C1' | H1' | 106.3° | 110.6° |
| O3' | C3' | C4' | 109.5° | 110.5° |
| O3' | C3' | H3' | 108.0° | 110.4° |
| C3' | C4' | O4' | 106.8° | 107.3° |
| C3' | C4' | C5' | 114.6° | 109.9° |
| C4' | C3' | H3' | 112.9° | 110.6° |
| C3' | C4' | H4' | 108.2° | 110.0° |
| O4' | C1' | N9 | 107.5° | 110.6° |
| C1' | O4' | C4' | 111.2° | 107.0° |
| O4' | C1' | H1' | 115.4° | 110.6° |
| C1' | N9 | C8 | 124.3° | 126.3° |
| C1' | N9 | C4 | 127.8° | 126.3° |
| N9 | C1' | H1' | 105.1° | 110.7° |
| O4' | C4' | C5' | 110.4° | 109.8° |
| O4' | C4' | H4' | 112.5° | 109.8° |
| C4' | C5' | O5' | 111.6° | 109.5° |
| C5' | C4' | H4' | 104.4° | 110.0° |
| C4' | C5' | H5' | 108.8° | 109.4° |
| C4' | C5' | H5'A | 108.3° | 109.5° |
| O5' | C5' | H5' | 108.8° | 109.5° |
| O5' | C5' | H5'A | 108.3° | 109.5° |
| C5' | O5' | HO5' | 109.5° | 114.0° |
| C8 | N9 | C4 | 107.8° | 107.5° |
| N9 | C8 | N7 | 108.3° | 109.9° |
| N9 | C8 | H8 | 125.8° | 125.0° |
| N9 | C4 | C5 | 106.8° | 106.0° |
| N9 | C4 | N3 | 133.2° | 134.9° |
| C8 | N7 | C5 | 109.3° | 109.5° |
| N7 | C8 | H8 | 125.8° | 125.1° |
| N7 | C5 | C6 | 132.3° | 134.7° |
| N7 | C5 | C4 | 107.8° | 107.1° |
| C6 | C5 | C4 | 119.9° | 118.2° |
| C5 | C6 | N6 | 120.3° | 120.8° |
| C5 | C6 | N1 | 119.4° | 118.5° |
| C5 | C4 | N3 | 120.0° | 119.1° |
| N6 | C6 | N1 | 120.3° | 120.7° |
| C6 | N6 | HN6 | 109.5° | 120.0° |
| C6 | N6 | HN6A | 109.5° | 120.0° |
| C6 | N1 | C2 | 120.1° | 121.2° |
| C4 | N3 | C2 | 120.6° | 120.6° |
| N3 | C2 | N1 | 120.0° | 122.5° |
| N3 | C2 | H2 | 120.0° | 118.7° |
| N1 | C2 | H2 | 120.0° | 118.8° |
| H5' | C5' | H5'A | 111.1° | 109.4° |
| HN6 | N6 | HN6A | 109.5° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 118.5° | 120.0° |
| O1P | P | O2P | O3' | 118.5° | 120.0° |
| O1P | P | O3P | O3' | 117.3° | 120.0° |
| O1P | P | O3' | C3' | 163.0° | 55.0° |
| O1P | P | O2P | HO2P | 0.7° | 180.0° |
| O1P | P | O3P | HO3P | 176.4° | 60.0° |
| O2P | P | O3P | O3' | 123.3° | 120.0° |
| O2P | P | O3' | C3' | 43.5° | 65.0° |
| O2P | P | O3P | HO3P | 57.0° | 60.0° |
| O3P | P | O3' | C3' | 79.4° | 175.0° |
| O3P | P | O2P | HO2P | 117.9° | 60.0° |
| P | O3' | C3' | C2' | 164.6° | 120.0° |
| P | O3' | C3' | C4' | 51.0° | 125.2° |
| O3' | P | O2P | HO2P | 119.2° | 60.0° |
| O3' | P | O3P | HO3P | 66.3° | 180.0° |
| P | O3' | C3' | H3' | 72.2° | 2.5° |
| O2' | C2' | C3' | C1' | 120.8° | 118.2° |
| O2' | C2' | C3' | H2' | 116.7° | 123.6° |
| O2' | C2' | C1' | H2' | 116.7° | 123.6° |
| O2' | C2' | C3' | O3' | 33.0° | 20.3° |
| O2' | C2' | C3' | C4' | 150.0° | 139.0° |
| O2' | C2' | C1' | O4' | 149.9° | 155.2° |
| O2' | C2' | C1' | N9 | 90.2° | 86.3° |
| O2' | C2' | C3' | H3' | 87.2° | 102.1° |
| O2' | C2' | C1' | H1' | 26.5° | 36.7° |
| C3' | C2' | C1' | H2' | 122.5° | 118.2° |
| C2' | C3' | O3' | C4' | 113.6° | 114.8° |
| C2' | C3' | O3' | H3' | 123.2° | 122.5° |
| C2' | C3' | C4' | H3' | 122.8° | 118.8° |
| C3' | C2' | C1' | O4' | 29.2° | 37.0° |
| C3' | C2' | C1' | N9 | 149.1° | 155.5° |
| C2' | C3' | C4' | O4' | 20.0° | 2.0° |
| C2' | C3' | C4' | C5' | 102.6° | 121.4° |
| C3' | C2' | O2' | HO2' | 13.3° | 180.0° |
| C3' | C2' | C1' | H1' | 94.3° | 81.5° |
| C2' | C3' | C4' | H4' | 141.4° | 117.3° |
| C1' | C2' | C3' | O3' | 87.7° | 97.8° |
| C1' | C2' | C3' | C4' | 29.3° | 20.9° |
| C2' | C1' | O4' | N9 | 125.5° | 118.5° |
| C2' | C1' | O4' | H1' | 117.6° | 118.5° |
| C2' | C1' | N9 | H1' | 117.3° | 123.0° |
| C2' | C1' | O4' | C4' | 18.0° | 40.0° |
| C2' | C1' | N9 | C8 | 119.9° | 95.0° |
| C2' | C1' | N9 | C4 | 62.8° | 84.7° |
| C1' | C2' | O2' | HO2' | 101.2° | 67.3° |
| C1' | C2' | C3' | H3' | 152.1° | 139.7° |
| O3' | C3' | C4' | H3' | 120.3° | 122.6° |
| O3' | C3' | C4' | O4' | 97.0° | 120.7° |
| O3' | C3' | C4' | C5' | 140.4° | 119.9° |
| O3' | C3' | C2' | H2' | 149.8° | 144.0° |
| O3' | C3' | C4' | H4' | 24.4° | 1.3° |
| C3' | C4' | O4' | C1' | 1.4° | 26.5° |
| C3' | C4' | O4' | C5' | 125.1° | 119.4° |
| C3' | C4' | O4' | H4' | 118.6° | 119.5° |
| C3' | C4' | C5' | H4' | 118.2° | 121.2° |
| C3' | C4' | C5' | O5' | 64.3° | 175.0° |
| C4' | C3' | C2' | H2' | 93.2° | 97.3° |
| C3' | C4' | C5' | H5' | 175.7° | 55.0° |
| C3' | C4' | C5' | H5'A | 54.8° | 64.9° |
| O4' | C1' | N9 | H1' | 123.5° | 122.9° |
| C1' | O4' | C4' | C5' | 123.8° | 145.9° |
| O4' | C1' | N9 | C8 | 120.9° | 19.1° |
| O4' | C1' | N9 | C4 | 56.4° | 161.2° |
| O4' | C1' | C2' | H2' | 93.3° | 81.2° |
| C1' | O4' | C4' | H4' | 120.0° | 93.0° |
| N9 | C1' | O4' | C4' | 143.4° | 158.6° |
| C1' | N9 | C8 | C4 | 177.8° | 179.7° |
| C1' | N9 | C8 | N7 | 178.7° | 180.0° |
| C1' | N9 | C4 | C5 | 178.4° | 179.9° |
| C1' | N9 | C4 | N3 | 2.0° | 0.0° |
| N9 | C1' | C2' | H2' | 26.5° | 37.3° |
| C1' | N9 | C8 | H8 | 1.3° | 0.0° |
| O4' | C4' | C5' | H4' | 121.2° | 121.0° |
| O4' | C4' | C5' | O5' | 56.3° | 67.2° |
| O4' | C4' | C3' | H3' | 142.8° | 116.7° |
| C4' | O4' | C1' | H1' | 99.6° | 78.5° |
| O4' | C4' | C5' | H5' | 63.7° | 172.8° |
| O4' | C4' | C5' | H5'A | 175.5° | 52.9° |
| C4' | C5' | O5' | H5' | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'A | 119.1° | 120.0° |
| C5' | C4' | C3' | H3' | 20.2° | 2.7° |
| C4' | C5' | H5' | H5'A | 119.1° | 120.0° |
| C4' | C5' | O5' | HO5' | 49.9° | 179.9° |
| O5' | C5' | C4' | H4' | 177.5° | 53.8° |
| O5' | C5' | H5' | H5'A | 119.2° | 120.0° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C8 | N7 | C5 | 0.7° | 0.0° |
| C8 | N9 | C4 | C5 | 0.8° | 0.4° |
| C8 | N9 | C4 | N3 | 179.7° | 179.7° |
| C8 | N9 | C1' | H1' | 2.6° | 142.0° |
| C4 | N9 | C8 | N7 | 0.9° | 0.3° |
| N9 | C4 | C5 | N7 | 0.4° | 0.4° |
| N9 | C4 | C5 | C6 | 179.6° | 179.8° |
| N9 | C4 | C5 | N3 | 179.6° | 179.9° |
| N9 | C4 | N3 | C2 | 179.5° | 180.0° |
| C4 | N9 | C1' | H1' | 179.9° | 38.3° |
| C4 | N9 | C8 | H8 | 179.1° | 179.7° |
| C8 | N7 | C5 | C6 | 179.8° | 179.9° |
| C8 | N7 | C5 | C4 | 0.2° | 0.2° |
| N7 | C5 | C6 | C4 | 180.0° | 179.8° |
| N7 | C5 | C6 | N6 | 0.1° | 0.1° |
| N7 | C5 | C6 | N1 | 180.0° | 180.0° |
| N7 | C5 | C4 | N3 | 180.0° | 179.7° |
| C5 | N7 | C8 | H8 | 179.3° | 180.0° |
| C5 | C6 | N6 | N1 | 179.9° | 179.9° |
| C6 | C5 | C4 | N3 | 0.0° | 0.1° |
| C5 | C6 | N1 | C2 | 0.1° | 0.9° |
| C5 | C6 | N6 | HN6 | 66.8° | 0.1° |
| C5 | C6 | N6 | HN6A | 53.2° | 180.0° |
| C4 | C5 | C6 | N6 | 179.8° | 179.7° |
| C4 | C5 | C6 | N1 | 0.1° | 0.2° |
| C5 | C4 | N3 | C2 | 0.0° | 0.2° |
| N6 | C6 | N1 | C2 | 179.8° | 179.0° |
| C6 | N6 | HN6 | HN6A | 120.0° | 179.9° |
| C6 | N1 | C2 | N3 | 0.0° | 1.2° |
| N1 | C6 | N6 | HN6 | 113.1° | 180.0° |
| N1 | C6 | N6 | HN6A | 126.9° | 0.1° |
| C6 | N1 | C2 | H2 | 179.9° | 179.6° |
| C4 | N3 | C2 | N1 | 0.0° | 0.8° |
| C4 | N3 | C2 | H2 | 180.0° | 180.0° |
| N3 | C2 | N1 | H2 | 180.0° | 179.2° |
| HO2' | O2' | C2' | H2' | 136.1° | 56.4° |
| H2' | C2' | C3' | H3' | 29.6° | 21.5° |
| H2' | C2' | C1' | H1' | 143.2° | 160.3° |
| H3' | C3' | C4' | H4' | 95.9° | 123.9° |
| H4' | C4' | C5' | H5' | 57.5° | 66.2° |
| H4' | C4' | C5' | H5'A | 63.4° | 173.9° |
| H5' | C5' | O5' | HO5' | 169.9° | 60.0° |
| H5'A | C5' | O5' | HO5' | 69.2° | 60.0° |
