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3AM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1PPdoub1.48Å1.51Å
PO2Psing1.61Å1.51Å
PO3Psing1.61Å1.51Å
PO3'sing1.61Å1.62Å
O2'C2'sing1.43Å1.42Å
C2'C3'sing1.55Å1.52Å
C2'C1'sing1.55Å1.53Å
C3'O3'sing1.43Å1.42Å
C3'C4'sing1.54Å1.53Å
C1'O4'sing1.44Å1.42Å
C1'N9sing1.46Å1.48Å
O4'C4'sing1.44Å1.41Å
C4'C5'sing1.53Å1.53Å
C5'O5'sing1.43Å1.41Å
N9C8sing1.36Å1.37ÅAromatic
N9C4sing1.37Å1.38ÅAromatic
C8N7doub1.30Å1.35ÅAromatic
N7C5sing1.35Å1.35ÅAromatic
C5C6doub1.40Å1.39ÅAromatic
C5C4sing1.41Å1.39ÅAromatic
C6N6sing1.38Å1.33Å
C6N1sing1.33Å1.38ÅAromatic
C4N3doub1.33Å1.36ÅAromatic
N3C2sing1.32Å1.38ÅAromatic
C2N1doub1.32Å1.38ÅAromatic
O2PHO2Psing0.97Å0.95Å
O3PHO3Psing0.97Å0.95Å
O2'HO2'sing0.97Å0.95Å
C2'H2'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C1'H1'sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
O5'HO5'sing0.97Å0.95Å
C8H8sing1.08Å1.08Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
C2H2sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1PPO2P109.3°109.5°
O1PPO3P107.9°109.5°
O1PPO3'107.5°109.5°
O2PPO3P110.4°109.5°
O2PPO3'111.0°109.5°
PO2PHO2P109.5°114.0°
O3PPO3'110.5°109.4°
PO3PHO3P109.5°114.0°
PO3'C3'125.1°123.0°
O2'C2'C3'112.5°110.9°
O2'C2'C1'112.6°110.9°
C2'O2'HO2'109.5°114.0°
O2'C2'H2'103.2°110.8°
C3'C2'C1'101.9°102.1°
C2'C3'O3'109.4°110.5°
C2'C3'C4'104.2°104.2°
C3'C2'H2'113.6°110.9°
C2'C3'H3'112.9°110.5°
C2'C1'O4'106.4°103.5°
C2'C1'N9116.5°110.7°
C1'C2'H2'113.5°110.9°
C2'C1'H1'106.3°110.6°
O3'C3'C4'109.5°110.5°
O3'C3'H3'108.0°110.4°
C3'C4'O4'106.8°107.3°
C3'C4'C5'114.6°109.9°
C4'C3'H3'112.9°110.6°
C3'C4'H4'108.2°110.0°
O4'C1'N9107.5°110.6°
C1'O4'C4'111.2°107.0°
O4'C1'H1'115.4°110.6°
C1'N9C8124.3°126.3°
C1'N9C4127.8°126.3°
N9C1'H1'105.1°110.7°
O4'C4'C5'110.4°109.8°
O4'C4'H4'112.5°109.8°
C4'C5'O5'111.6°109.5°
C5'C4'H4'104.4°110.0°
C4'C5'H5'108.8°109.4°
C4'C5'H5'A108.3°109.5°
O5'C5'H5'108.8°109.5°
O5'C5'H5'A108.3°109.5°
C5'O5'HO5'109.5°114.0°
C8N9C4107.8°107.5°
N9C8N7108.3°109.9°
N9C8H8125.8°125.0°
N9C4C5106.8°106.0°
N9C4N3133.2°134.9°
C8N7C5109.3°109.5°
N7C8H8125.8°125.1°
N7C5C6132.3°134.7°
N7C5C4107.8°107.1°
C6C5C4119.9°118.2°
C5C6N6120.3°120.8°
C5C6N1119.4°118.5°
C5C4N3120.0°119.1°
N6C6N1120.3°120.7°
C6N6HN6109.5°120.0°
C6N6HN6A109.5°120.0°
C6N1C2120.1°121.2°
C4N3C2120.6°120.6°
N3C2N1120.0°122.5°
N3C2H2120.0°118.7°
N1C2H2120.0°118.8°
H5'C5'H5'A111.1°109.4°
HN6N6HN6A109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1PPO2PO3P118.5°120.0°
O1PPO2PO3'118.5°120.0°
O1PPO3PO3'117.3°120.0°
O1PPO3'C3'163.0°55.0°
O1PPO2PHO2P0.7°180.0°
O1PPO3PHO3P176.4°60.0°
O2PPO3PO3'123.3°120.0°
O2PPO3'C3'43.5°65.0°
O2PPO3PHO3P57.0°60.0°
O3PPO3'C3'79.4°175.0°
O3PPO2PHO2P117.9°60.0°
PO3'C3'C2'164.6°120.0°
PO3'C3'C4'51.0°125.2°
O3'PO2PHO2P119.2°60.0°
O3'PO3PHO3P66.3°180.0°
PO3'C3'H3'72.2°2.5°
O2'C2'C3'C1'120.8°118.2°
O2'C2'C3'H2'116.7°123.6°
O2'C2'C1'H2'116.7°123.6°
O2'C2'C3'O3'33.0°20.3°
O2'C2'C3'C4'150.0°139.0°
O2'C2'C1'O4'149.9°155.2°
O2'C2'C1'N990.2°86.3°
O2'C2'C3'H3'87.2°102.1°
O2'C2'C1'H1'26.5°36.7°
C3'C2'C1'H2'122.5°118.2°
C2'C3'O3'C4'113.6°114.8°
C2'C3'O3'H3'123.2°122.5°
C2'C3'C4'H3'122.8°118.8°
C3'C2'C1'O4'29.2°37.0°
C3'C2'C1'N9149.1°155.5°
C2'C3'C4'O4'20.0°2.0°
C2'C3'C4'C5'102.6°121.4°
C3'C2'O2'HO2'13.3°180.0°
C3'C2'C1'H1'94.3°81.5°
C2'C3'C4'H4'141.4°117.3°
C1'C2'C3'O3'87.7°97.8°
C1'C2'C3'C4'29.3°20.9°
C2'C1'O4'N9125.5°118.5°
C2'C1'O4'H1'117.6°118.5°
C2'C1'N9H1'117.3°123.0°
C2'C1'O4'C4'18.0°40.0°
C2'C1'N9C8119.9°95.0°
C2'C1'N9C462.8°84.7°
C1'C2'O2'HO2'101.2°67.3°
C1'C2'C3'H3'152.1°139.7°
O3'C3'C4'H3'120.3°122.6°
O3'C3'C4'O4'97.0°120.7°
O3'C3'C4'C5'140.4°119.9°
O3'C3'C2'H2'149.8°144.0°
O3'C3'C4'H4'24.4°1.3°
C3'C4'O4'C1'1.4°26.5°
C3'C4'O4'C5'125.1°119.4°
C3'C4'O4'H4'118.6°119.5°
C3'C4'C5'H4'118.2°121.2°
C3'C4'C5'O5'64.3°175.0°
C4'C3'C2'H2'93.2°97.3°
C3'C4'C5'H5'175.7°55.0°
C3'C4'C5'H5'A54.8°64.9°
O4'C1'N9H1'123.5°122.9°
C1'O4'C4'C5'123.8°145.9°
O4'C1'N9C8120.9°19.1°
O4'C1'N9C456.4°161.2°
O4'C1'C2'H2'93.3°81.2°
C1'O4'C4'H4'120.0°93.0°
N9C1'O4'C4'143.4°158.6°
C1'N9C8C4177.8°179.7°
C1'N9C8N7178.7°180.0°
C1'N9C4C5178.4°179.9°
C1'N9C4N32.0°0.0°
N9C1'C2'H2'26.5°37.3°
C1'N9C8H81.3°0.0°
O4'C4'C5'H4'121.2°121.0°
O4'C4'C5'O5'56.3°67.2°
O4'C4'C3'H3'142.8°116.7°
C4'O4'C1'H1'99.6°78.5°
O4'C4'C5'H5'63.7°172.8°
O4'C4'C5'H5'A175.5°52.9°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A119.1°120.0°
C5'C4'C3'H3'20.2°2.7°
C4'C5'H5'H5'A119.1°120.0°
C4'C5'O5'HO5'49.9°179.9°
O5'C5'C4'H4'177.5°53.8°
O5'C5'H5'H5'A119.2°120.0°
N9C8N7H8180.0°180.0°
N9C8N7C50.7°0.0°
C8N9C4C50.8°0.4°
C8N9C4N3179.7°179.7°
C8N9C1'H1'2.6°142.0°
C4N9C8N70.9°0.3°
N9C4C5N70.4°0.4°
N9C4C5C6179.6°179.8°
N9C4C5N3179.6°179.9°
N9C4N3C2179.5°180.0°
C4N9C1'H1'179.9°38.3°
C4N9C8H8179.1°179.7°
C8N7C5C6179.8°179.9°
C8N7C5C40.2°0.2°
N7C5C6C4180.0°179.8°
N7C5C6N60.1°0.1°
N7C5C6N1180.0°180.0°
N7C5C4N3180.0°179.7°
C5N7C8H8179.3°180.0°
C5C6N6N1179.9°179.9°
C6C5C4N30.0°0.1°
C5C6N1C20.1°0.9°
C5C6N6HN666.8°0.1°
C5C6N6HN6A53.2°180.0°
C4C5C6N6179.8°179.7°
C4C5C6N10.1°0.2°
C5C4N3C20.0°0.2°
N6C6N1C2179.8°179.0°
C6N6HN6HN6A120.0°179.9°
C6N1C2N30.0°1.2°
N1C6N6HN6113.1°180.0°
N1C6N6HN6A126.9°0.1°
C6N1C2H2179.9°179.6°
C4N3C2N10.0°0.8°
C4N3C2H2180.0°180.0°
N3C2N1H2180.0°179.2°
HO2'O2'C2'H2'136.1°56.4°
H2'C2'C3'H3'29.6°21.5°
H2'C2'C1'H1'143.2°160.3°
H3'C3'C4'H4'95.9°123.9°
H4'C4'C5'H5'57.5°66.2°
H4'C4'C5'H5'A63.4°173.9°
H5'C5'O5'HO5'169.9°60.0°
H5'AC5'O5'HO5'69.2°60.0°

225158

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