3AD
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O5' | C5' | sing | 1.43Å | 1.43Å | |
O5' | HO5' | sing | 0.97Å | 0.95Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | H5'1 | sing | 1.09Å | 1.12Å | |
C5' | H5'2 | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.44Å | 1.46Å | |
C4' | C3' | sing | 1.54Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.41Å | |
C3' | C2' | sing | 1.55Å | 1.53Å | |
C3' | H3'1 | sing | 1.09Å | 1.11Å | |
C3' | H3'2 | sing | 1.09Å | 1.11Å | |
C2' | O2' | sing | 1.43Å | 1.41Å | |
C2' | C1' | sing | 1.54Å | 1.53Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.46Å | 1.47Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
N9 | C8 | sing | 1.36Å | 1.38Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
N7 | C5 | sing | 1.35Å | 1.39Å | Aromatic |
C5 | C6 | sing | 1.40Å | 1.42Å | Aromatic |
C5 | C4 | doub | 1.40Å | 1.39Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.34Å | |
C6 | N1 | doub | 1.33Å | 1.35Å | Aromatic |
N6 | HN61 | sing | 0.97Å | 1.02Å | |
N6 | HN62 | sing | 0.97Å | 1.02Å | |
N1 | C2 | sing | 1.32Å | 1.34Å | Aromatic |
C2 | N3 | doub | 1.32Å | 1.34Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.10Å | |
N3 | C4 | sing | 1.33Å | 1.35Å | Aromatic |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C5' | O5' | HO5' | 110.4° | 106.8° |
O5' | C5' | C4' | 110.4° | 109.5° |
O5' | C5' | H5'1 | 111.8° | 109.5° |
O5' | C5' | H5'2 | 111.9° | 109.4° |
C4' | C5' | H5'1 | 111.9° | 109.5° |
C4' | C5' | H5'2 | 111.8° | 109.4° |
C5' | C4' | O4' | 109.6° | 110.5° |
C5' | C4' | C3' | 115.1° | 110.5° |
C5' | C4' | H4' | 104.5° | 110.3° |
H5'1 | C5' | H5'2 | 98.5° | 109.5° |
O4' | C4' | C3' | 106.4° | 104.8° |
O4' | C4' | H4' | 113.5° | 110.4° |
C4' | O4' | C1' | 109.6° | 105.3° |
C3' | C4' | H4' | 107.9° | 110.3° |
C4' | C3' | C2' | 103.2° | 104.1° |
C4' | C3' | H3'1 | 114.6° | 110.5° |
C4' | C3' | H3'2 | 114.6° | 110.6° |
O4' | C1' | C2' | 105.6° | 104.9° |
O4' | C1' | N9 | 108.5° | 110.4° |
O4' | C1' | H1' | 115.2° | 110.3° |
C2' | C3' | H3'1 | 114.6° | 110.6° |
C2' | C3' | H3'2 | 114.6° | 110.4° |
C3' | C2' | O2' | 111.2° | 110.5° |
C3' | C2' | C1' | 101.4° | 104.0° |
C3' | C2' | H2' | 113.7° | 110.5° |
H3'1 | C3' | H3'2 | 96.0° | 110.6° |
O2' | C2' | C1' | 109.7° | 110.8° |
O2' | C2' | H2' | 105.9° | 110.5° |
C2' | O2' | HO2' | 111.2° | 106.8° |
C1' | C2' | H2' | 115.0° | 110.4° |
C2' | C1' | N9 | 116.3° | 110.4° |
C2' | C1' | H1' | 107.3° | 110.4° |
N9 | C1' | H1' | 104.3° | 110.3° |
C1' | N9 | C8 | 126.4° | 126.2° |
C1' | N9 | C4 | 128.0° | 126.3° |
C8 | N9 | C4 | 105.6° | 107.4° |
N9 | C8 | N7 | 113.9° | 109.9° |
N9 | C8 | H8 | 125.2° | 125.1° |
N9 | C4 | C5 | 105.8° | 106.1° |
N9 | C4 | N3 | 127.8° | 134.9° |
N7 | C8 | H8 | 120.9° | 125.0° |
C8 | N7 | C5 | 104.0° | 109.5° |
N7 | C5 | C6 | 132.4° | 134.7° |
N7 | C5 | C4 | 110.6° | 107.1° |
C6 | C5 | C4 | 117.0° | 118.2° |
C5 | C6 | N6 | 123.7° | 120.8° |
C5 | C6 | N1 | 117.8° | 118.5° |
C5 | C4 | N3 | 126.4° | 119.0° |
N6 | C6 | N1 | 118.5° | 120.8° |
C6 | N6 | HN61 | 123.7° | 120.1° |
C6 | N6 | HN62 | 107.2° | 120.0° |
C6 | N1 | C2 | 118.4° | 121.2° |
HN61 | N6 | HN62 | 107.1° | 119.9° |
N1 | C2 | N3 | 129.4° | 122.5° |
N1 | C2 | H2 | 115.3° | 118.8° |
N3 | C2 | H2 | 115.3° | 118.8° |
C2 | N3 | C4 | 110.9° | 120.7° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O5' | C5' | C4' | H5'1 | 125.3° | 120.1° |
O5' | C5' | C4' | H5'2 | 125.3° | 119.9° |
O5' | C5' | H5'1 | H5'2 | 117.8° | 120.0° |
O5' | C5' | C4' | O4' | 179.0° | 61.4° |
O5' | C5' | C4' | C3' | 61.2° | 176.9° |
O5' | C5' | C4' | H4' | 57.0° | 60.9° |
HO5' | O5' | C5' | C4' | 180.0° | 179.9° |
HO5' | O5' | C5' | H5'1 | 54.7° | 60.0° |
HO5' | O5' | C5' | H5'2 | 54.7° | 60.0° |
C4' | C5' | H5'1 | H5'2 | 117.7° | 119.9° |
C5' | C4' | O4' | C3' | 125.1° | 119.0° |
C5' | C4' | O4' | H4' | 116.4° | 122.2° |
C5' | C4' | C3' | H4' | 116.2° | 122.2° |
C5' | C4' | O4' | C1' | 127.1° | 159.4° |
C5' | C4' | C3' | C2' | 100.8° | 143.0° |
C5' | C4' | C3' | H3'1 | 24.4° | 24.3° |
C5' | C4' | C3' | H3'2 | 134.0° | 98.4° |
H5'1 | C5' | C4' | O4' | 53.7° | 178.5° |
H5'1 | C5' | C4' | C3' | 173.6° | 63.0° |
H5'1 | C5' | C4' | H4' | 68.3° | 59.2° |
H5'2 | C5' | C4' | O4' | 55.7° | 58.5° |
H5'2 | C5' | C4' | C3' | 64.1° | 57.0° |
H5'2 | C5' | C4' | H4' | 177.7° | 179.2° |
O4' | C4' | C3' | H4' | 122.1° | 118.8° |
O4' | C4' | C3' | C2' | 20.9° | 24.0° |
O4' | C4' | C3' | H3'1 | 146.1° | 94.7° |
O4' | C4' | C3' | H3'2 | 104.3° | 142.6° |
C4' | O4' | C1' | C2' | 24.3° | 40.4° |
C4' | O4' | C1' | N9 | 149.7° | 159.4° |
C4' | O4' | C1' | H1' | 93.9° | 78.5° |
C3' | C4' | O4' | C1' | 2.0° | 40.4° |
C4' | C3' | C2' | H3'1 | 125.2° | 118.7° |
C4' | C3' | C2' | H3'2 | 125.2° | 118.7° |
C4' | C3' | H3'1 | H3'2 | 120.5° | 122.8° |
C4' | C3' | C2' | O2' | 150.6° | 118.8° |
C4' | C3' | C2' | C1' | 34.0° | 0.2° |
C4' | C3' | C2' | H2' | 90.0° | 118.6° |
H4' | C4' | O4' | C1' | 116.5° | 78.3° |
H4' | C4' | C3' | C2' | 143.0° | 94.8° |
H4' | C4' | C3' | H3'1 | 91.8° | 146.5° |
H4' | C4' | C3' | H3'2 | 17.8° | 23.8° |
O4' | C1' | C2' | C3' | 36.4° | 23.8° |
O4' | C1' | C2' | O2' | 154.0° | 142.5° |
O4' | C1' | C2' | N9 | 120.4° | 119.0° |
O4' | C1' | C2' | H1' | 123.4° | 118.9° |
O4' | C1' | C2' | H2' | 86.8° | 94.7° |
O4' | C1' | N9 | H1' | 123.3° | 122.2° |
O4' | C1' | N9 | C8 | 26.9° | 27.1° |
O4' | C1' | N9 | C4 | 154.6° | 153.0° |
C2' | C3' | H3'1 | H3'2 | 120.5° | 122.6° |
C3' | C2' | O2' | C1' | 111.4° | 114.7° |
C3' | C2' | O2' | H2' | 124.0° | 122.6° |
C3' | C2' | C1' | H2' | 123.1° | 118.5° |
C3' | C2' | O2' | HO2' | 180.0° | 61.5° |
C3' | C2' | C1' | N9 | 156.8° | 142.8° |
C3' | C2' | C1' | H1' | 87.0° | 95.1° |
H3'1 | C3' | C2' | O2' | 84.2° | 122.5° |
H3'1 | C3' | C2' | C1' | 159.2° | 118.5° |
H3'1 | C3' | C2' | H2' | 35.2° | 0.1° |
H3'2 | C3' | C2' | O2' | 25.3° | 0.1° |
H3'2 | C3' | C2' | C1' | 91.3° | 118.8° |
H3'2 | C3' | C2' | H2' | 144.8° | 122.7° |
O2' | C2' | C1' | H2' | 119.2° | 122.7° |
O2' | C2' | C1' | N9 | 85.6° | 98.5° |
O2' | C2' | C1' | H1' | 30.6° | 23.7° |
C1' | C2' | O2' | HO2' | 68.6° | 176.2° |
C2' | C1' | N9 | H1' | 117.9° | 122.3° |
C2' | C1' | N9 | C8 | 145.7° | 88.5° |
C2' | C1' | N9 | C4 | 35.8° | 91.5° |
H2' | C2' | O2' | HO2' | 56.0° | 61.1° |
H2' | C2' | C1' | N9 | 33.7° | 24.2° |
H2' | C2' | C1' | H1' | 149.9° | 146.4° |
C1' | N9 | C8 | C4 | 178.8° | 179.9° |
C1' | N9 | C8 | N7 | 177.9° | 180.0° |
C1' | N9 | C8 | H8 | 2.1° | 0.1° |
C1' | N9 | C4 | C5 | 177.8° | 179.7° |
C1' | N9 | C4 | N3 | 1.7° | 0.1° |
H1' | C1' | N9 | C8 | 96.4° | 149.3° |
H1' | C1' | N9 | C4 | 82.1° | 30.8° |
N9 | C8 | N7 | H8 | 180.0° | 180.0° |
N9 | C8 | N7 | C5 | 0.4° | 0.3° |
C8 | N9 | C4 | C5 | 1.0° | 0.2° |
C8 | N9 | C4 | N3 | 179.5° | 179.9° |
C4 | N9 | C8 | N7 | 0.9° | 0.0° |
C4 | N9 | C8 | H8 | 179.1° | 180.0° |
N9 | C4 | C5 | N7 | 0.8° | 0.4° |
N9 | C4 | C5 | C6 | 179.0° | 179.6° |
N9 | C4 | C5 | N3 | 179.5° | 179.9° |
N9 | C4 | N3 | C2 | 179.4° | 179.9° |
C8 | N7 | C5 | C6 | 179.5° | 179.4° |
C8 | N7 | C5 | C4 | 0.3° | 0.4° |
H8 | C8 | N7 | C5 | 179.6° | 179.8° |
N7 | C5 | C6 | C4 | 179.8° | 178.9° |
N7 | C5 | C6 | N6 | 1.0° | 0.8° |
N7 | C5 | C6 | N1 | 179.4° | 179.5° |
N7 | C5 | C4 | N3 | 179.6° | 179.7° |
C5 | C6 | N6 | N1 | 179.7° | 179.7° |
C5 | C6 | N6 | HN61 | 180.0° | 179.7° |
C5 | C6 | N6 | HN62 | 54.7° | 0.6° |
C5 | C6 | N1 | C2 | 0.7° | 0.3° |
C6 | C5 | C4 | N3 | 0.5° | 0.6° |
C4 | C5 | C6 | N6 | 178.8° | 179.7° |
C4 | C5 | C6 | N1 | 0.8° | 0.6° |
C5 | C4 | N3 | C2 | 0.0° | 0.2° |
C6 | N6 | HN61 | HN62 | 125.3° | 179.7° |
N6 | C6 | N1 | C2 | 179.0° | 180.0° |
N1 | C6 | N6 | HN61 | 0.4° | 0.0° |
N1 | C6 | N6 | HN62 | 125.6° | 179.7° |
C6 | N1 | C2 | N3 | 0.1° | 0.0° |
C6 | N1 | C2 | H2 | 179.9° | 180.0° |
N1 | C2 | N3 | H2 | 180.0° | 180.0° |
N1 | C2 | N3 | C4 | 0.2° | 0.1° |
H2 | C2 | N3 | C4 | 179.8° | 179.9° |