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38Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2'Bsing1.43Å1.47Å
O1Bsing1.42Å1.44Å
BO3'sing1.43Å1.43Å
O5'Psing1.61Å1.63Å
O2PPdoub1.48Å1.51Å
O1PPsing1.61Å1.49Å
PO3Psing1.61Å1.51Å
N1C2doub1.32Å1.34ÅAromatic
N1C6sing1.33Å1.35ÅAromatic
O1C10sing1.43Å1.44Å
C2N3sing1.32Å1.35ÅAromatic
C2H2sing1.08Å1.08Å
N3C4doub1.33Å1.35ÅAromatic
C5C4sing1.41Å1.39ÅAromatic
C4N9sing1.37Å1.34ÅAromatic
C6C5doub1.40Å1.39ÅAromatic
C5N7sing1.35Å1.35ÅAromatic
N6C6sing1.38Å1.36Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
N7C8doub1.30Å1.34ÅAromatic
N9C8sing1.36Å1.35ÅAromatic
C8H8sing1.08Å1.08Å
N9C1'sing1.47Å1.49Å
C13BRsing1.89Å1.87Å
C1'C2'sing1.54Å1.52Å
C1'O4'sing1.44Å1.43Å
C1'H1'sing1.09Å1.10Å
C33C10sing1.53Å1.55Å
C10C11sing1.51Å1.48Å
C10H10sing1.09Å1.10Å
C12C11doub1.38Å1.44ÅAromatic
C11C13sing1.38Å1.47ÅAromatic
C12C16sing1.39Å1.49ÅAromatic
C12H12sing1.08Å1.08Å
C13C14doub1.38Å1.40ÅAromatic
C15C14sing1.38Å1.40ÅAromatic
C14H14sing1.08Å1.08Å
C16C15doub1.39Å1.41ÅAromatic
C15H15sing1.08Å1.08Å
O35C16sing1.36Å1.36Å
O1PHO1Psing0.97Å0.95Å
C2'O2'sing1.45Å1.41Å
C2'C3'sing1.56Å1.51Å
C2'H2'sing1.09Å1.10Å
C3'C4'sing1.55Å1.53Å
C3'O3'sing1.44Å1.42Å
C3'H3'sing1.09Å1.10Å
N34C33sing1.47Å1.48Å
C33H33sing1.09Å1.10Å
C33H33Asing1.09Å1.10Å
N34HN34sing1.01Å1.00Å
N34HN3Asing1.01Å1.00Å
O35C36sing1.43Å1.44Å
C37C36sing1.53Å1.51Å
C36H36sing1.09Å1.10Å
C36H36Asing1.09Å1.10Å
C37H37sing1.09Å1.10Å
C37H37Asing1.09Å1.10Å
C37H37Bsing1.09Å1.10Å
O3PHO3Psing0.97Å0.95Å
O4'C4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.52Å
C4'H4'sing1.09Å1.10Å
C5'O5'sing1.43Å1.43Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2'BO1108.1°126.8°
O2'BO3'99.9°106.4°
BO2'C2'112.9°103.7°
O1BO3'114.0°126.8°
BO1C10114.5°114.0°
BO3'C3'114.3°107.3°
O5'PO2P103.9°109.5°
O5'PO1P104.4°109.5°
O5'PO3P104.1°109.5°
PO5'C5'119.7°123.0°
O2PPO1P115.3°109.5°
O2PPO3P113.3°109.5°
O1PPO3P114.2°109.5°
PO1PHO1P109.5°114.0°
PO3PHO3P109.5°114.0°
C2N1C6123.6°121.2°
N1C2N3120.6°122.5°
N1C2H2119.7°118.8°
N1C6C5116.6°118.4°
N1C6N6121.7°120.8°
O1C10C33107.8°109.5°
O1C10C11102.8°109.5°
O1C10H10112.6°109.5°
N3C2H2119.7°118.7°
C2N3C4118.5°120.6°
N3C4C5121.5°119.1°
N3C4N9130.8°135.0°
C5C4N9107.7°106.0°
C4C5C6119.1°118.2°
C4C5N7108.1°107.1°
C4N9C8107.0°107.5°
C4N9C1'123.9°126.2°
C6C5N7132.8°134.7°
C5C6N6121.7°120.8°
C5N7C8106.2°109.5°
C6N6HN6109.5°120.0°
C6N6HN6A109.5°119.9°
HN6N6HN6A109.4°120.0°
N7C8N9111.0°109.9°
N7C8H8124.5°125.0°
N9C8H8124.5°125.0°
C8N9C1'129.1°126.3°
N9C1'C2'111.3°109.9°
N9C1'O4'113.3°109.8°
N9C1'H1'108.9°109.9°
BRC13C11118.3°119.9°
BRC13C14122.8°119.9°
C2'C1'O4'104.9°107.2°
C2'C1'H1'108.5°109.8°
C1'C2'O2'111.9°108.6°
C1'C2'C3'105.0°104.2°
C1'C2'H2'111.8°113.2°
O4'C1'H1'109.8°110.2°
C1'O4'C4'109.7°107.0°
C33C10C11110.3°109.5°
C33C10H10111.0°109.5°
C10C33N34112.6°109.5°
C10C33H33108.7°109.5°
C10C33H33A108.7°109.5°
C11C10H10112.0°109.5°
C10C11C12110.2°120.0°
C10C11C13128.2°120.0°
C12C11C13121.5°120.0°
C11C12C16117.0°119.9°
C11C12H12121.5°120.0°
C11C13C14118.8°120.2°
C16C12H12121.5°120.1°
C12C16C15118.6°119.9°
C12C16O35118.0°120.1°
C13C14C15120.4°120.0°
C13C14H14119.8°120.1°
C15C14H14119.8°119.9°
C14C15C16123.6°120.0°
C14C15H15118.2°120.0°
C16C15H15118.2°120.1°
C15C16O35123.4°120.0°
C16O35C36118.8°117.0°
O2'C2'C3'101.9°102.8°
O2'C2'H2'113.5°113.3°
C3'C2'H2'112.0°113.9°
C2'C3'C4'103.7°102.2°
C2'C3'O3'103.8°104.7°
C2'C3'H3'112.0°113.3°
C4'C3'O3'111.7°108.6°
C4'C3'H3'111.7°113.2°
C3'C4'O4'107.7°103.9°
C3'C4'C5'112.6°110.5°
C3'C4'H4'109.5°110.6°
O3'C3'H3'113.4°113.8°
N34C33H33108.7°109.5°
N34C33H33A108.7°109.5°
C33N34HN34109.5°111.0°
C33N34HN3A109.4°111.0°
H33C33H33A109.5°109.5°
HN34N34HN3A109.5°111.0°
O35C36C37105.6°109.5°
O35C36H36110.4°109.5°
O35C36H36A110.4°109.5°
C37C36H36110.4°109.4°
C37C36H36A110.4°109.4°
C36C37H37109.5°109.5°
C36C37H37A109.5°109.5°
C36C37H37B109.5°109.5°
H36C36H36A109.5°109.5°
H37C37H37A109.4°109.5°
H37C37H37B109.5°109.5°
H37AC37H37B109.5°109.5°
O4'C4'C5'106.6°110.5°
O4'C4'H4'110.7°110.7°
C5'C4'H4'109.6°110.4°
C4'C5'O5'107.6°109.4°
C4'C5'H5'109.9°109.5°
C4'C5'H5'A109.9°109.5°
O5'C5'H5'109.9°109.5°
O5'C5'H5'A109.9°109.5°
H5'C5'H5'A109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2'BO1O3'110.1°179.6°
O2'BO1C10109.2°0.3°
BO2'C2'C1'139.1°145.0°
BO2'C2'C3'27.4°34.9°
BO2'C2'H2'93.2°88.4°
O2'BO3'C3'1.2°27.1°
BO1C10C33105.1°90.0°
BO1C10C1111.4°150.0°
BO1C10H10132.1°30.0°
O1BO2'C2'100.8°140.8°
O1BO3'C3'113.8°153.2°
O3'BO1C10140.7°180.0°
O3'BO2'C2'18.6°39.5°
BO3'C3'C2'14.6°4.5°
BO3'C3'C4'96.5°113.1°
BO3'C3'H3'136.4°119.8°
O5'PO2PO1P113.6°120.0°
O5'PO2PO3P112.3°120.0°
O5'PO1PO3P113.0°120.0°
O5'PO1PHO1P113.3°179.9°
O5'PO3PHO3P112.2°59.9°
PO5'C5'C4'152.8°180.0°
PO5'C5'H5'33.1°60.0°
PO5'C5'H5'A87.5°60.1°
O2PPO1PO3P133.7°120.0°
O2PPO1PHO1P0.0°60.0°
O2PPO3PHO3P0.0°180.0°
O2PPO5'C5'172.2°55.0°
O1PPO3PHO3P134.6°60.0°
O1PPO5'C5'51.0°175.0°
O3PPO1PHO1P133.7°60.1°
O3PPO5'C5'69.0°65.0°
N1C2N3H2180.0°180.0°
N1C2N3C40.2°0.0°
C2N1C6C50.6°0.1°
C2N1C6N6179.9°180.0°
C6N1C2N30.0°0.1°
C6N1C2H2180.0°180.0°
N1C6C5C40.9°0.0°
N1C6C5N6179.3°180.0°
N1C6C5N7179.3°180.0°
N1C6N6HN60.0°0.1°
N1C6N6HN6A120.0°180.0°
O1C10C33C11111.5°120.0°
O1C10C33H10123.8°120.0°
O1C10C11H10121.2°120.0°
O1C10C11C128.9°25.2°
O1C10C11C13174.6°155.0°
O1C10C33N3451.8°65.0°
O1C10C33H3368.6°175.0°
O1C10C33H33A172.3°55.0°
C2N3C4C50.1°0.0°
C2N3C4N9179.7°180.0°
H2C2N3C4179.8°180.0°
N3C4C5N9179.6°180.0°
N3C4C5C60.7°0.0°
N3C4C5N7179.5°180.0°
N3C4N9C8179.9°180.0°
N3C4N9C1'1.9°0.0°
C4C5C6N7178.5°179.9°
C4C5C6N6179.8°180.0°
C4C5N7C81.1°0.0°
C5C4N9C80.3°0.0°
C5C4N9C1'178.5°180.0°
N9C4C5C6179.7°180.0°
N9C4C5N70.8°0.0°
C4N9C8N70.4°0.0°
C4N9C8C1'178.1°180.0°
C4N9C8H8179.6°179.9°
C4N9C1'C2'145.3°85.0°
C4N9C1'O4'96.8°157.3°
C4N9C1'H1'25.8°36.0°
C5C6N6HN6179.3°179.9°
C5C6N6HN6A59.3°0.1°
C6C5N7C8179.7°180.0°
N7C5C6N61.3°0.1°
C5N7C8N90.9°0.0°
C5N7C8H8179.1°180.0°
C6N6HN6HN6A120.0°179.9°
N7C8N9H8180.0°179.9°
N7C8N9C1'177.6°179.9°
C8N9C1'C2'32.5°95.0°
C8N9C1'O4'85.5°22.7°
C8N9C1'H1'152.0°144.0°
H8C8N9C1'2.4°0.0°
N9C1'C2'O4'123.0°119.3°
N9C1'C2'H1'119.7°121.0°
N9C1'O4'H1'122.0°121.2°
N9C1'C2'O2'157.8°127.6°
N9C1'C2'C3'92.4°123.3°
N9C1'C2'H2'29.2°1.0°
N9C1'O4'C4'96.8°147.0°
BRC13C11C104.6°0.0°
BRC13C11C12179.3°179.8°
BRC13C11C14176.4°180.0°
BRC13C14C15178.0°180.0°
BRC13C14H142.0°0.1°
C2'C1'O4'H1'116.4°119.5°
C1'C2'O2'C3'111.7°110.0°
C1'C2'O2'H2'127.7°126.6°
C1'C2'C3'H2'121.5°123.8°
C1'C2'C3'C4'24.2°18.9°
C1'C2'C3'O3'141.0°132.2°
C1'C2'C3'H3'96.3°103.2°
C2'C1'O4'C4'24.9°27.7°
O4'C1'C2'O2'79.2°113.0°
O4'C1'C2'C3'30.5°4.0°
O4'C1'C2'H2'152.1°120.3°
C1'O4'C4'C3'9.5°40.1°
C1'O4'C4'C5'111.6°158.6°
C1'O4'C4'H4'129.3°78.7°
H1'C1'C2'O2'38.1°6.6°
H1'C1'C2'C3'147.8°115.7°
H1'C1'C2'H2'90.6°120.0°
H1'C1'O4'C4'141.2°91.8°
C33C10C11H10124.1°120.0°
C33C10C11C12105.9°94.8°
C33C10C11C1370.6°85.0°
C10C33N34H33120.4°120.0°
C10C33N34H33A120.5°120.0°
C10C33H33H33A118.6°120.0°
C10C33N34HN34180.0°56.0°
C10C33N34HN3A60.0°180.0°
C10C11C12C13176.8°179.8°
C10C11C12C16179.9°180.0°
C10C11C12H120.1°0.1°
C10C11C13C14179.0°180.0°
C11C10C33N3459.7°175.0°
C11C10C33H33179.8°55.0°
C11C10C33H33A60.8°65.0°
H10C10C11C12130.0°145.3°
H10C10C11C1353.5°35.0°
H10C10C33N34175.6°55.0°
H10C10C33H3355.2°65.0°
H10C10C33H33A63.9°175.0°
C11C12C16H12180.0°179.9°
C12C11C13C142.9°0.2°
C11C12C16C152.7°0.1°
C11C12C16O35178.6°180.0°
C13C11C12C163.3°0.2°
C13C11C12H12176.7°179.7°
C11C13C14C151.8°0.0°
C11C13C14H14178.2°179.9°
C12C16C15C141.8°0.3°
C12C16C15O35178.6°179.9°
C12C16C15H15178.2°180.0°
C12C16O35C36174.7°180.0°
H12C12C16C15177.3°180.0°
H12C12C16O351.3°0.1°
C13C14C15H14180.0°180.0°
C13C14C15C161.3°0.3°
C13C14C15H15178.7°180.0°
C14C15C16H15180.0°179.7°
C14C15C16O35179.7°179.7°
H14C14C15C16178.7°179.7°
H14C14C15H151.3°0.0°
C15C16O35C366.7°0.0°
H15C15C16O350.4°0.1°
C16O35C36C37173.9°180.0°
C16O35C36H3666.7°60.0°
C16O35C36H36A54.5°60.0°
O2'C2'C3'H2'121.7°122.9°
O2'C2'C3'C4'92.7°94.3°
O2'C2'C3'O3'24.2°18.9°
O2'C2'C3'H3'146.8°143.5°
C2'C3'C4'O3'111.2°110.3°
C2'C3'C4'H3'120.8°122.2°
C2'C3'O3'H3'121.8°124.3°
C2'C3'C4'O4'9.9°35.8°
C2'C3'C4'C5'127.2°154.3°
C2'C3'C4'H4'110.6°83.1°
H2'C2'C3'C4'145.7°142.7°
H2'C2'C3'O3'97.5°104.0°
H2'C2'C3'H3'25.2°20.6°
C4'C3'O3'H3'127.2°127.1°
C3'C4'O4'C5'121.1°118.5°
C3'C4'O4'H4'119.7°118.8°
C3'C4'C5'H4'122.2°122.7°
C3'C4'C5'O5'178.0°175.0°
C3'C4'C5'H5'62.3°55.0°
C3'C4'C5'H5'A58.3°65.0°
O3'C3'C4'O4'121.1°146.1°
O3'C3'C4'C5'121.7°95.4°
O3'C3'C4'H4'0.6°27.2°
H3'C3'C4'O4'110.9°86.5°
H3'C3'C4'C5'6.4°32.1°
H3'C3'C4'H4'128.6°154.7°
N34C33H33H33A118.6°120.0°
C33N34HN34HN3A120.0°124.0°
H33C33N34HN3459.6°64.0°
H33C33N34HN3A179.6°60.0°
H33AC33N34HN3459.5°176.0°
H33AC33N34HN3A60.5°60.0°
O35C36C37H36119.4°120.0°
O35C36C37H36A119.4°120.0°
O35C36H36H36A121.8°120.1°
O35C36C37H37180.0°180.0°
O35C36C37H37A60.0°60.0°
O35C36C37H37B60.0°60.0°
C37C36H36H36A121.8°119.9°
C36C37H37H37A120.0°120.0°
C36C37H37H37B120.0°120.0°
C36C37H37AH37B120.0°120.0°
H36C36C37H3760.6°60.0°
H36C36C37H37A179.4°179.9°
H36C36C37H37B59.4°60.0°
H36AC36C37H3760.6°60.0°
H36AC36C37H37A59.4°60.0°
H36AC36C37H37B179.4°180.0°
H37C37H37AH37B120.0°120.0°
O4'C4'C5'H4'119.9°122.9°
O4'C4'C5'O5'60.1°70.6°
O4'C4'C5'H5'179.8°169.5°
O4'C4'C5'H5'A59.7°49.4°
C4'C5'O5'H5'119.7°120.0°
C4'C5'O5'H5'A119.7°119.9°
C4'C5'H5'H5'A120.9°120.0°
H4'C4'C5'O5'59.8°52.3°
H4'C4'C5'H5'59.9°67.7°
H4'C4'C5'H5'A179.5°172.3°
O5'C5'H5'H5'A120.8°120.0°

223790

PDB entries from 2024-08-14

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