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365

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3PPsing1.61Å1.61Å
BO1sing1.37Å1.42Å
BC12sing1.55Å1.48Å
BO2'sing1.37Å1.42Å
BO3'sing1.37Å1.43Å
PO1Pdoub1.48Å1.50Å
PO2Psing1.61Å1.53Å
PO5'sing1.61Å1.59Å
N1C2doub1.32Å1.35ÅAromatic
N1C6sing1.33Å1.34ÅAromatic
O1C10sing1.44Å1.43Å
C2N3sing1.32Å1.34ÅAromatic
N3C4doub1.33Å1.35ÅAromatic
C4C5sing1.41Å1.39ÅAromatic
C4N9sing1.37Å1.33ÅAromatic
C5C6doub1.41Å1.38ÅAromatic
C5N7sing1.35Å1.34ÅAromatic
C6N6sing1.38Å1.36Å
N7C8doub1.30Å1.35ÅAromatic
C8N9sing1.36Å1.35ÅAromatic
N9C1'sing1.47Å1.49Å
C1'C2'sing1.54Å1.51Å
C1'O4'sing1.44Å1.42Å
C10C11sing1.51Å1.47Å
C10C17sing1.53Å1.52Å
C11C12doub1.39Å1.44ÅAromatic
C11C13sing1.38Å1.38ÅAromatic
C12C16sing1.38Å1.39ÅAromatic
C13C14doub1.38Å1.39ÅAromatic
C14C15sing1.38Å1.39ÅAromatic
C15C16doub1.39Å1.41ÅAromatic
C16O19sing1.36Å1.37Å
C17N18sing1.47Å1.47Å
O19C20sing1.43Å1.43Å
C2'O2'sing1.45Å1.45Å
C2'C3'sing1.56Å1.49Å
C20C21sing1.53Å1.51Å
C21C22sing1.53Å1.52Å
C22O23sing1.43Å1.43Å
C3'O3'sing1.44Å1.41Å
C3'C4'sing1.54Å1.52Å
C4'O4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.51Å
C5'O5'sing1.43Å1.44Å
C2H2sing1.08Å1.08Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
C8H8sing1.08Å1.08Å
C1'H1'sing1.09Å1.10Å
C10H10sing1.09Å1.10Å
C13H13sing1.08Å1.08Å
C14H14sing1.08Å1.08Å
C15H15sing1.08Å1.08Å
C17H17sing1.09Å1.10Å
C17H17Asing1.09Å1.10Å
N18HN18sing1.01Å1.00Å
N18HN1Asing1.01Å1.00Å
C2'H2'sing1.09Å1.10Å
C20H20sing1.09Å1.10Å
C20H20Asing1.09Å1.10Å
C21H21sing1.09Å1.10Å
C21H21Asing1.09Å1.10Å
C22H22sing1.09Å1.10Å
C22H22Asing1.09Å1.10Å
O23HO23sing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
O3PHOP3sing0.97Å0.95Å
O2PHOP2sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3PPO1P105.2°109.5°
O3PPO2P108.5°109.4°
O3PPO5'99.1°109.5°
PO3PHOP3109.5°114.0°
O1BC12104.6°106.7°
O1BO2'107.0°110.5°
O1BO3'112.6°110.6°
BO1C10114.3°105.9°
C12BO2'108.3°110.8°
C12BO3'122.9°110.9°
BC12C11107.3°106.0°
BC12C16134.2°134.0°
O2'BO3'100.4°107.3°
BO2'C2'111.8°105.0°
BO3'C3'115.4°105.0°
O1PPO2P119.0°109.5°
O1PPO5'111.0°109.5°
O2PPO5'111.9°109.5°
PO2PHOP2109.5°114.1°
PO5'C5'120.1°123.0°
C2N1C6120.7°121.3°
N1C2N3122.7°122.5°
N1C2H2118.6°118.8°
N1C6C5118.1°118.4°
N1C6N6121.6°120.8°
O1C10C11102.7°106.6°
O1C10C17110.4°110.1°
O1C10H10112.3°110.0°
C2N3C4117.8°120.6°
N3C2H2118.6°118.7°
N3C4C5120.8°119.1°
N3C4N9131.4°134.9°
C5C4N9107.8°106.0°
C4C5C6119.9°118.2°
C4C5N7108.2°107.1°
C4N9C8107.3°107.5°
C4N9C1'123.5°126.3°
C6C5N7132.0°134.7°
C5C6N6120.3°120.8°
C5N7C8106.3°109.4°
C6N6HN6109.5°119.9°
C6N6HN6A109.5°120.0°
N7C8N9110.4°110.0°
N7C8H8124.8°125.0°
C8N9C1'129.2°126.3°
N9C8H8124.8°125.0°
N9C1'C2'112.4°110.3°
N9C1'O4'112.7°110.3°
N9C1'H1'108.6°110.3°
C2'C1'O4'105.3°104.9°
C1'C2'O2'114.6°108.6°
C1'C2'C3'103.2°103.8°
C2'C1'H1'108.3°110.4°
C1'C2'H2'111.5°113.2°
C1'O4'C4'108.8°105.2°
O4'C1'H1'109.5°110.5°
C11C10C17108.2°110.0°
C10C11C12110.5°106.4°
C10C11C13127.5°133.5°
C11C10H10111.8°110.0°
C10C17N18111.3°109.5°
C17C10H10111.0°110.1°
C10C17H17109.0°109.5°
C10C17H17A109.0°109.5°
C12C11C13122.0°120.1°
C11C12C16118.4°120.0°
C11C13C14118.3°120.0°
C11C13H13120.8°120.0°
C12C16C15119.1°119.8°
C12C16O19121.7°120.1°
C13C14C15120.9°120.1°
C14C13H13120.9°120.0°
C13C14H14119.6°119.9°
C14C15C16121.2°120.0°
C15C14H14119.6°120.0°
C14C15H15119.4°119.9°
C15C16O19119.2°120.1°
C16C15H15119.4°120.0°
C16O19C20119.1°117.0°
N18C17H17109.0°109.5°
N18C17H17A109.0°109.4°
C17N18HN18109.5°111.0°
C17N18HN1A109.5°111.0°
O19C20C21109.9°109.5°
O19C20H20109.4°109.5°
O19C20H20A109.4°109.5°
O2'C2'C3'102.6°103.1°
O2'C2'H2'112.5°113.2°
C2'C3'O3'102.3°103.1°
C2'C3'C4'104.7°103.8°
C3'C2'H2'111.8°114.1°
C2'C3'H3'111.9°113.4°
C20C21C22109.3°109.5°
C21C20H20109.4°109.4°
C21C20H20A109.4°109.5°
C20C21H21109.5°109.4°
C20C21H21A109.5°109.5°
C21C22O23108.1°109.5°
C22C21H21109.5°109.5°
C22C21H21A109.5°109.5°
C21C22H22109.8°109.5°
C21C22H22A109.8°109.5°
O23C22H22109.8°109.5°
O23C22H22A109.8°109.5°
C22O23HO23109.5°114.0°
O3'C3'C4'112.4°108.6°
O3'C3'H3'113.3°113.1°
C3'C4'O4'106.8°104.9°
C3'C4'C5'115.6°110.3°
C4'C3'H3'111.5°113.8°
C3'C4'H4'108.3°110.3°
O4'C4'C5'108.2°110.3°
O4'C4'H4'109.4°110.4°
C4'C5'O5'108.2°109.5°
C5'C4'H4'108.4°110.4°
C4'C5'H5'109.8°109.5°
C4'C5'H5'A109.8°109.5°
O5'C5'H5'109.8°109.5°
O5'C5'H5'A109.8°109.5°
HN6N6HN6A109.4°120.1°
H17C17H17A109.5°109.5°
HN18N18HN1A109.4°111.0°
H20C20H20A109.5°109.4°
H21C21H21A109.5°109.4°
H22C22H22A109.4°109.4°
H5'C5'H5'A109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3PPO1PO2P121.8°120.0°
O3PPO1PO5'106.3°120.0°
O3PPO2PO5'108.3°119.9°
O3PPO5'C5'97.3°175.0°
O3PPO2PHOP2120.1°60.0°
O1BC12O2'113.8°120.3°
O1BC12O3'130.0°120.6°
O1BO2'O3'117.7°120.8°
BO1C10C117.3°28.7°
BO1C10C17107.9°148.0°
O1BC12C111.1°17.6°
O1BC12C16175.6°162.4°
O1BO2'C2'100.3°80.3°
O1BO3'C3'113.8°80.2°
BO1C10H10127.6°90.6°
C12BO2'O3'130.0°121.2°
C12BO1C105.5°28.2°
BC12C11C103.4°0.3°
BC12C11C16177.3°180.0°
BC12C11C13179.2°179.7°
BC12C16C15177.7°179.8°
BC12C16O192.8°0.3°
C12BO2'C2'147.4°161.7°
C12BO3'C3'119.7°161.7°
O2'BO1C10109.3°148.7°
BO2'C2'C1'138.6°132.9°
O2'BC12C11112.8°138.0°
O2'BC12C1670.5°42.1°
BO2'C2'C3'27.6°23.3°
O2'BO3'C3'0.3°40.5°
BO2'C2'H2'92.7°100.5°
O3'BO1C10141.3°92.5°
O3'BC12C11131.1°102.9°
O3'BC12C1645.7°77.1°
O3'BO2'C2'17.4°40.5°
BO3'C3'C2'16.5°23.3°
BO3'C3'C4'95.2°133.0°
BO3'C3'H3'137.2°99.6°
O1PPO2PO5'131.6°120.1°
O1PPO5'C5'13.0°55.0°
O1PPO3PHOP30.0°60.0°
O1PPO2PHOP20.0°180.0°
O2PPO5'C5'148.5°65.1°
O2PPO3PHOP3128.4°60.0°
PO5'C5'C4'172.1°180.0°
PO5'C5'H5'52.3°60.0°
PO5'C5'H5'A68.1°60.0°
O5'PO3PHOP3114.8°180.0°
O5'PO2PHOP2131.6°59.9°
N1C2N3H2180.0°180.0°
N1C2N3C40.3°0.0°
C2N1C6C50.4°0.0°
C2N1C6N6178.8°180.0°
C6N1C2N30.8°0.0°
N1C6C5C40.9°0.0°
N1C6C5N6179.2°180.0°
N1C6C5N7179.7°180.0°
C6N1C2H2179.2°180.0°
N1C6N6HN60.0°0.0°
N1C6N6HN6A120.0°180.0°
O1C10C11C17116.8°119.3°
O1C10C11H10120.6°119.2°
O1C10C17H10125.3°121.4°
O1C10C11C126.3°17.2°
O1C10C11C13176.5°162.8°
O1C10C17N1847.5°66.4°
O1C10C17H1772.8°173.6°
O1C10C17H17A167.8°53.6°
C2N3C4C51.7°0.0°
C2N3C4N9179.4°180.0°
N3C4C5N9179.1°180.0°
N3C4C5C62.0°0.0°
N3C4C5N7178.9°180.0°
N3C4N9C8178.8°180.0°
N3C4N9C1'2.4°0.0°
C4N3C2H2179.7°180.0°
C4C5C6N7178.8°180.0°
C4C5C6N6179.9°180.0°
C4C5N7C80.1°0.0°
C5C4N9C80.2°0.0°
C5C4N9C1'178.6°180.0°
N9C4C5C6178.8°180.0°
N9C4C5N70.2°0.0°
C4N9C8N70.1°0.0°
C4N9C8C1'178.6°180.0°
C4N9C1'C2'153.8°85.0°
C4N9C1'O4'87.5°159.5°
C4N9C8H8179.9°180.0°
C4N9C1'H1'34.1°37.2°
C6C5N7C8178.7°180.0°
C5C6N6HN6179.2°180.0°
C5C6N6HN6A59.2°0.0°
N7C5C6N61.1°0.0°
C5N7C8N90.0°0.0°
C5N7C8H8180.0°180.0°
C6N6HN6HN6A120.0°180.0°
N7C8N9H8180.0°180.0°
N7C8N9C1'178.5°180.0°
C8N9C1'C2'24.6°95.0°
C8N9C1'O4'94.1°20.5°
C8N9C1'H1'144.3°142.8°
N9C1'C2'O4'123.0°118.8°
N9C1'C2'H1'119.9°122.1°
N9C1'O4'H1'121.0°122.2°
N9C1'C2'O2'160.5°107.8°
N9C1'C2'C3'88.8°143.1°
N9C1'O4'C4'94.6°159.8°
C1'N9C8H81.4°0.1°
N9C1'C2'H2'31.3°18.8°
C2'C1'O4'H1'116.2°119.0°
C1'C2'O2'C3'111.0°109.6°
C1'C2'O2'H2'128.7°126.6°
C1'C2'C3'H2'119.9°123.6°
C1'C2'C3'O3'144.3°113.2°
C1'C2'C3'C4'27.0°0.1°
C2'C1'O4'C4'28.1°40.9°
C1'C2'C3'H3'94.0°124.1°
O4'C1'C2'O2'76.5°133.4°
O4'C1'C2'C3'34.2°24.2°
C1'O4'C4'C3'10.8°40.9°
C1'O4'C4'C5'114.3°159.7°
O4'C1'C2'H2'154.3°100.0°
C1'O4'C4'H4'127.8°78.0°
C11C10C17H10123.1°121.4°
C10C11C12C13177.4°179.9°
C10C11C12C16179.3°179.7°
C10C11C13C14178.8°179.9°
C11C10C17N1864.2°176.4°
C10C11C13H131.2°0.2°
C11C10C17H17175.5°56.4°
C11C10C17H17A56.1°63.6°
C17C10C11C12110.5°136.5°
C17C10C11C1366.7°43.4°
C10C17N18H17120.3°120.1°
C10C17N18H17A120.3°120.0°
C10C17H17H17A119.2°120.0°
C10C17N18HN18180.0°56.1°
C10C17N18HN1A60.0°180.0°
C12C11C13C141.9°0.2°
C11C12C16C151.2°0.2°
C11C12C16O19179.3°179.7°
C12C11C10H10126.9°102.0°
C12C11C13H13178.1°179.8°
C13C11C12C161.9°0.3°
C11C13C14H13180.0°180.0°
C11C13C14C151.3°0.0°
C13C11C10H1055.8°78.0°
C11C13C14H14178.7°180.0°
C12C16C15C140.7°0.0°
C12C16C15O19179.5°180.0°
C12C16O19C20163.2°180.0°
C12C16C15H15179.3°180.0°
C13C14C15H14180.0°180.0°
C13C14C15C160.7°0.1°
C13C14C15H15179.3°179.9°
C14C15C16H15180.0°180.0°
C14C15C16O19179.8°179.9°
C15C14C13H13178.7°180.0°
C15C16O19C2017.3°0.0°
C16C15C14H14179.3°179.9°
C16O19C20C21173.8°180.0°
O19C16C15H150.2°0.0°
C16O19C20H2053.7°60.0°
C16O19C20H20A66.2°60.0°
N18C17C10H10172.8°55.0°
N18C17H17H17A119.2°120.0°
C17N18HN18HN1A120.0°123.9°
O19C20C21H20120.1°120.0°
O19C20C21H20A120.1°120.0°
O19C20C21C22107.9°180.0°
O19C20H20H20A119.8°120.0°
O19C20C21H21132.1°60.0°
O19C20C21H21A12.1°60.0°
O2'C2'C3'H2'120.8°123.2°
O2'C2'C3'O3'25.0°0.0°
O2'C2'C3'C4'92.4°113.3°
O2'C2'C1'H1'40.6°14.3°
O2'C2'C3'H3'146.6°122.7°
C2'C3'O3'C4'111.7°109.7°
C2'C3'O3'H3'120.7°122.9°
C2'C3'C4'H3'121.2°123.8°
C2'C3'C4'O4'11.0°24.1°
C2'C3'C4'C5'131.4°143.0°
C3'C2'C1'H1'151.3°94.8°
C2'C3'C4'H4'106.7°94.8°
C20C21C22H21120.0°120.0°
C20C21C22H21A120.0°120.1°
C20C21C22O23142.9°180.0°
C21C20H20H20A119.8°120.0°
C20C21H21H21A120.1°120.0°
C20C21C22H2297.3°60.0°
C20C21C22H22A23.1°59.9°
C21C22O23H22119.8°120.0°
C21C22O23H22A119.8°120.1°
C22C21C20H2012.2°60.0°
C22C21C20H20A132.0°59.9°
C22C21H21H21A120.0°120.0°
C21C22H22H22A120.6°120.0°
C21C22O23HO23180.0°180.0°
O23C22C21H2122.9°60.0°
O23C22C21H21A97.1°59.9°
O23C22H22H22A120.6°120.0°
O3'C3'C4'H3'128.5°127.0°
O3'C3'C4'O4'121.3°133.4°
O3'C3'C4'C5'118.3°107.8°
O3'C3'C2'H2'95.8°123.2°
O3'C3'C4'H4'3.6°14.5°
C3'C4'O4'C5'125.0°118.8°
C3'C4'O4'H4'117.0°118.9°
C3'C4'C5'H4'121.8°122.2°
C3'C4'C5'O5'170.2°175.0°
C4'C3'C2'H2'146.8°123.6°
C3'C4'C5'H5'50.4°55.0°
C3'C4'C5'H5'A70.0°65.0°
O4'C4'C5'H4'118.5°122.3°
O4'C4'C5'O5'70.1°69.5°
C4'O4'C1'H1'144.4°78.0°
O4'C4'C3'H3'110.2°99.6°
O4'C4'C5'H5'170.1°170.5°
O4'C4'C5'H5'A49.7°50.5°
C4'C5'O5'H5'119.8°120.0°
C4'C5'O5'H5'A119.8°120.0°
C5'C4'C3'H3'10.2°19.2°
C4'C5'H5'H5'A120.6°120.0°
O5'C5'C4'H4'48.4°52.8°
O5'C5'H5'H5'A120.6°120.0°
H1'C1'C2'H2'88.6°140.9°
H10C10C17H1752.5°65.0°
H10C10C17H17A67.0°174.9°
H13C13C14H141.3°0.0°
H14C14C15H150.7°0.1°
H17C17N18HN1859.8°64.0°
H17C17N18HN1A179.7°60.0°
H17AC17N18HN1859.7°176.0°
H17AC17N18HN1A60.3°60.0°
H2'C2'C3'H3'25.9°0.4°
H20C20C21H21107.8°180.0°
H20C20C21H21A132.2°60.0°
H20AC20C21H2112.1°60.0°
H20AC20C21H21A108.0°180.0°
H21C21C22H22142.7°180.0°
H21C21C22H22A96.9°60.0°
H21AC21C22H2222.7°60.0°
H21AC21C22H22A143.1°NaN°
H22C22O23HO2360.2°60.0°
H22AC22O23HO2360.2°60.0°
H3'C3'C4'H4'132.1°141.5°
H4'C4'C5'H5'71.4°67.2°
H4'C4'C5'H5'A168.2°172.8°

223790

PDB entries from 2024-08-14

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