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Summary Geometry Related PDB entries

35J

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
CAJ	SAB	doub	1.60Å	1.63Å
CAJ	NAI	sing	1.35Å	1.34Å
NAI	CAG	sing	1.46Å	1.47Å
CAG	CAK	sing	1.51Å	1.39Å
CAE	CAK	doub	1.39Å	1.39Å	Aromatic
CAE	CAC	sing	1.39Å	1.39Å	Aromatic
CAK	CAF	sing	1.38Å	1.39Å	Aromatic
CAC	CAD	doub	1.38Å	1.39Å	Aromatic
CAF	NAH	doub	1.32Å	1.40Å	Aromatic
CAD	NAH	sing	1.32Å	1.40Å	Aromatic
CAJ	H1	sing	1.08Å	1.08Å
CAG	H3	sing	1.09Å	1.10Å
CAG	H4	sing	1.09Å	1.10Å
CAE	H5	sing	1.08Å	1.08Å
CAC	H6	sing	1.08Å	1.08Å
CAD	H7	sing	1.08Å	1.08Å
CAF	H8	sing	1.08Å	1.08Å
NAI	H2	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
SAB	CAJ	NAI	120.0°	120.0°
SAB	CAJ	H1	120.0°	119.9°
CAJ	NAI	CAG	122.0°	120.0°
NAI	CAJ	H1	120.0°	120.0°
CAJ	NAI	H2	119.0°	119.9°
NAI	CAG	CAK	109.5°	109.4°
NAI	CAG	H3	109.5°	109.5°
NAI	CAG	H4	109.5°	109.5°
CAG	NAI	H2	119.0°	120.1°
CAG	CAK	CAE	119.9°	120.4°
CAG	CAK	CAF	120.0°	120.4°
CAK	CAG	H3	109.5°	109.4°
CAK	CAG	H4	109.5°	109.5°
CAK	CAE	CAC	120.3°	118.4°
CAE	CAK	CAF	120.1°	119.2°
CAK	CAE	H5	119.9°	120.8°
CAE	CAC	CAD	120.1°	119.2°
CAC	CAE	H5	119.9°	120.8°
CAE	CAC	H6	119.9°	120.4°
CAK	CAF	NAH	119.9°	120.7°
CAK	CAF	H8	120.0°	119.6°
CAC	CAD	NAH	119.9°	120.7°
CAD	CAC	H6	120.0°	120.4°
CAC	CAD	H7	120.1°	119.7°
CAF	NAH	CAD	119.8°	121.8°
NAH	CAF	H8	120.0°	119.7°
NAH	CAD	H7	120.1°	119.6°
H3	CAG	H4	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
SAB	CAJ	NAI	H1	180.0°	179.7°
SAB	CAJ	NAI	CAG	0.0°	0.0°
SAB	CAJ	NAI	H2	180.0°	180.0°
CAJ	NAI	CAG	H2	180.0°	180.0°
CAJ	NAI	CAG	CAK	139.7°	180.0°
CAJ	NAI	CAG	H3	19.6°	60.0°
CAJ	NAI	CAG	H4	100.3°	60.0°
NAI	CAG	CAK	H3	120.0°	120.0°
NAI	CAG	CAK	H4	120.0°	120.0°
NAI	CAG	CAK	CAE	64.0°	89.8°
NAI	CAG	CAK	CAF	116.0°	90.0°
CAG	NAI	CAJ	H1	180.0°	179.7°
NAI	CAG	H3	H4	120.0°	120.0°
CAG	CAK	CAE	CAF	179.9°	179.8°
CAG	CAK	CAE	CAC	180.0°	180.0°
CAG	CAK	CAF	NAH	179.9°	179.7°
CAK	CAG	H3	H4	120.0°	120.0°
CAG	CAK	CAE	H5	0.0°	0.0°
CAG	CAK	CAF	H8	0.0°	0.0°
CAK	CAG	NAI	H2	40.3°	0.0°
CAK	CAE	CAC	H5	180.0°	180.0°
CAK	CAE	CAC	CAD	0.0°	0.1°
CAE	CAK	CAF	NAH	0.0°	0.5°
CAE	CAK	CAG	H3	56.0°	150.3°
CAE	CAK	CAG	H4	176.0°	30.2°
CAK	CAE	CAC	H6	180.0°	180.0°
CAE	CAK	CAF	H8	180.0°	179.8°
CAC	CAE	CAK	CAF	0.0°	0.2°
CAE	CAC	CAD	H6	180.0°	179.9°
CAE	CAC	CAD	NAH	0.0°	0.1°
CAE	CAC	CAD	H7	180.0°	180.0°
CAK	CAF	NAH	H8	180.0°	179.8°
CAK	CAF	NAH	CAD	0.0°	0.5°
CAF	CAK	CAG	H3	124.0°	30.0°
CAF	CAK	CAG	H4	4.0°	150.0°
CAF	CAK	CAE	H5	180.0°	179.8°
CAC	CAD	NAH	CAF	0.0°	0.2°
CAC	CAD	NAH	H7	180.0°	179.9°
CAD	CAC	CAE	H5	180.0°	179.9°
CAF	NAH	CAD	H7	179.9°	179.7°
NAH	CAD	CAC	H6	180.0°	180.0°
CAD	NAH	CAF	H8	180.0°	179.8°
H1	CAJ	NAI	H2	0.0°	0.3°
H3	CAG	NAI	H2	160.4°	119.9°
H4	CAG	NAI	H2	79.7°	120.0°
H5	CAE	CAC	H6	0.0°	0.0°
H6	CAC	CAD	H7	0.1°	0.1°

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PDB entries from 2026-01-14

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