35G
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | O1P | doub | 1.48Å | 1.45Å | |
P | O2P | sing | 1.61Å | 1.51Å | |
P | O5' | sing | 1.62Å | 1.50Å | |
P | O3' | sing | 1.63Å | 1.48Å | |
O2P | HOP2 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.45Å | 1.43Å | |
C5' | C4' | sing | 1.52Å | 1.52Å | |
C5' | H5'1 | sing | 1.09Å | 1.10Å | |
C5' | H5'2 | sing | 1.09Å | 1.10Å | |
C4' | O4' | sing | 1.43Å | 1.45Å | |
C4' | C3' | sing | 1.55Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O4' | C1' | sing | 1.45Å | 1.44Å | |
C3' | O3' | sing | 1.43Å | 1.39Å | |
C3' | C2' | sing | 1.53Å | 1.53Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
C2' | O2' | sing | 1.43Å | 1.42Å | |
C2' | C1' | sing | 1.55Å | 1.53Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.46Å | 1.49Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
N9 | C8 | sing | 1.36Å | 1.39Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.39Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.08Å | |
N7 | C5 | sing | 1.36Å | 1.40Å | Aromatic |
C5 | C6 | sing | 1.42Å | 1.44Å | |
C5 | C4 | doub | 1.40Å | 1.40Å | Aromatic |
C6 | O6 | doub | 1.22Å | 1.25Å | |
C6 | N1 | sing | 1.35Å | 1.40Å | |
N1 | C2 | sing | 1.36Å | 1.39Å | |
N1 | HN1 | sing | 0.97Å | 1.00Å | |
C2 | N2 | sing | 1.37Å | 1.35Å | |
C2 | N3 | doub | 1.32Å | 1.33Å | |
N2 | HN21 | sing | 0.97Å | 1.00Å | |
N2 | HN22 | sing | 0.97Å | 1.00Å | |
N3 | C4 | sing | 1.34Å | 1.37Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1P | P | O2P | 107.1° | 109.9° |
O1P | P | O5' | 111.0° | 109.9° |
O1P | P | O3' | 99.0° | 110.0° |
O2P | P | O5' | 111.8° | 110.0° |
O2P | P | O3' | 110.2° | 110.0° |
P | O2P | HOP2 | 109.5° | 114.0° |
O5' | P | O3' | 116.6° | 106.9° |
P | O5' | C5' | 120.0° | 120.2° |
P | O3' | C3' | 106.6° | 116.6° |
O5' | C5' | C4' | 106.4° | 106.7° |
O5' | C5' | H5'1 | 110.5° | 110.0° |
O5' | C5' | H5'2 | 110.5° | 110.0° |
C4' | C5' | H5'1 | 110.5° | 110.0° |
C4' | C5' | H5'2 | 110.5° | 110.0° |
C5' | C4' | O4' | 115.4° | 116.6° |
C5' | C4' | C3' | 111.3° | 109.1° |
C5' | C4' | H4' | 101.7° | 109.6° |
H5'1 | C5' | H5'2 | 108.4° | 110.1° |
O4' | C4' | C3' | 100.4° | 103.0° |
O4' | C4' | H4' | 112.3° | 109.5° |
C4' | O4' | C1' | 107.4° | 105.5° |
C3' | C4' | H4' | 116.4° | 108.8° |
C4' | C3' | O3' | 108.3° | 106.2° |
C4' | C3' | C2' | 103.7° | 101.0° |
C4' | C3' | H3' | 114.6° | 111.4° |
O4' | C1' | C2' | 107.7° | 107.1° |
O4' | C1' | N9 | 113.7° | 109.9° |
O4' | C1' | H1' | 111.7° | 109.9° |
O3' | C3' | C2' | 111.5° | 114.6° |
O3' | C3' | H3' | 107.2° | 111.1° |
C2' | C3' | H3' | 111.6° | 111.9° |
C3' | C2' | O2' | 111.7° | 110.6° |
C3' | C2' | C1' | 101.7° | 103.3° |
C3' | C2' | H2' | 113.8° | 110.7° |
O2' | C2' | C1' | 111.3° | 110.6° |
O2' | C2' | H2' | 104.6° | 110.6° |
C2' | O2' | HO2' | 109.5° | 114.0° |
C1' | C2' | H2' | 114.1° | 110.8° |
C2' | C1' | N9 | 118.6° | 109.9° |
C2' | C1' | H1' | 105.9° | 109.9° |
N9 | C1' | H1' | 98.6° | 110.1° |
C1' | N9 | C8 | 136.6° | 126.3° |
C1' | N9 | C4 | 119.4° | 126.2° |
C8 | N9 | C4 | 103.9° | 107.5° |
N9 | C8 | N7 | 115.0° | 109.8° |
N9 | C8 | H8 | 122.5° | 125.1° |
N9 | C4 | C5 | 107.3° | 106.1° |
N9 | C4 | N3 | 124.7° | 134.2° |
N7 | C8 | H8 | 122.5° | 125.1° |
C8 | N7 | C5 | 104.5° | 109.3° |
N7 | C5 | C6 | 131.5° | 134.1° |
N7 | C5 | C4 | 109.2° | 107.3° |
C6 | C5 | C4 | 118.9° | 118.6° |
C5 | C6 | O6 | 131.4° | 120.9° |
C5 | C6 | N1 | 111.1° | 118.3° |
C5 | C4 | N3 | 128.0° | 119.7° |
O6 | C6 | N1 | 117.5° | 120.8° |
C6 | N1 | C2 | 125.4° | 120.4° |
C6 | N1 | HN1 | 117.3° | 119.8° |
C2 | N1 | HN1 | 117.3° | 119.8° |
N1 | C2 | N2 | 118.4° | 119.1° |
N1 | C2 | N3 | 123.9° | 121.9° |
N2 | C2 | N3 | 117.7° | 119.0° |
C2 | N2 | HN21 | 120.0° | 119.9° |
C2 | N2 | HN22 | 120.0° | 120.0° |
C2 | N3 | C4 | 112.3° | 121.1° |
HN21 | N2 | HN22 | 120.0° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1P | P | O2P | O5' | 121.9° | 121.2° |
O1P | P | O2P | O3' | 106.7° | 121.3° |
O1P | P | O5' | O3' | 112.3° | 119.4° |
O1P | P | O2P | HOP2 | 0.0° | 60.0° |
O1P | P | O5' | C5' | 68.9° | 153.4° |
O1P | P | O3' | C3' | 124.4° | 157.3° |
O2P | P | O5' | O3' | 128.1° | 119.4° |
O2P | P | O5' | C5' | 171.5° | 85.4° |
O2P | P | O3' | C3' | 123.5° | 81.5° |
O5' | P | O2P | HOP2 | 121.9° | 61.3° |
P | O5' | C5' | C4' | 28.3° | 49.7° |
P | O5' | C5' | H5'1 | 91.7° | 169.0° |
P | O5' | C5' | H5'2 | 148.3° | 69.5° |
O5' | P | O3' | C3' | 5.4° | 37.9° |
O3' | P | O2P | HOP2 | 106.7° | 178.8° |
O3' | P | O5' | C5' | 43.4° | 34.0° |
P | O3' | C3' | C4' | 58.9° | 57.3° |
P | O3' | C3' | C2' | 172.3° | 167.9° |
P | O3' | C3' | H3' | 65.2° | 64.1° |
O5' | C5' | C4' | H5'1 | 120.0° | 119.3° |
O5' | C5' | C4' | H5'2 | 120.0° | 119.3° |
O5' | C5' | H5'1 | H5'2 | 121.3° | 121.4° |
O5' | C5' | C4' | O4' | 139.2° | 176.9° |
O5' | C5' | C4' | C3' | 25.6° | 67.2° |
O5' | C5' | C4' | H4' | 99.0° | 51.8° |
C4' | C5' | H5'1 | H5'2 | 121.3° | 121.3° |
C5' | C4' | O4' | C3' | 119.7° | 119.3° |
C5' | C4' | O4' | H4' | 116.0° | 125.1° |
C5' | C4' | C3' | H4' | 115.9° | 119.5° |
C5' | C4' | O4' | C1' | 159.3° | 163.0° |
C5' | C4' | C3' | O3' | 75.7° | 72.6° |
C5' | C4' | C3' | C2' | 165.8° | 167.5° |
C5' | C4' | C3' | H3' | 43.9° | 48.5° |
H5'1 | C5' | C4' | O4' | 100.8° | 57.5° |
H5'1 | C5' | C4' | C3' | 145.6° | 173.5° |
H5'1 | C5' | C4' | H4' | 21.0° | 67.5° |
H5'2 | C5' | C4' | O4' | 19.2° | 63.8° |
H5'2 | C5' | C4' | C3' | 94.4° | 52.2° |
H5'2 | C5' | C4' | H4' | 141.0° | 171.1° |
O4' | C4' | C3' | H4' | 121.5° | 116.1° |
O4' | C4' | C3' | O3' | 161.6° | 163.0° |
O4' | C4' | C3' | C2' | 43.1° | 43.1° |
O4' | C4' | C3' | H3' | 78.8° | 75.9° |
C4' | O4' | C1' | C2' | 21.1° | 26.8° |
C4' | O4' | C1' | N9 | 154.7° | 146.1° |
C4' | O4' | C1' | H1' | 94.7° | 92.6° |
C3' | C4' | O4' | C1' | 39.6° | 43.7° |
C4' | C3' | O3' | C2' | 113.4° | 110.6° |
C4' | C3' | O3' | H3' | 124.1° | 121.3° |
C4' | C3' | C2' | H3' | 123.8° | 118.6° |
C4' | C3' | C2' | O2' | 88.4° | 92.6° |
C4' | C3' | C2' | C1' | 30.4° | 25.8° |
C4' | C3' | C2' | H2' | 153.5° | 144.4° |
H4' | C4' | O4' | C1' | 84.7° | 71.9° |
H4' | C4' | C3' | O3' | 40.1° | 46.9° |
H4' | C4' | C3' | C2' | 78.4° | 73.1° |
H4' | C4' | C3' | H3' | 159.7° | 168.0° |
O4' | C1' | C2' | C3' | 6.6° | 1.2° |
O4' | C1' | C2' | O2' | 112.4° | 117.2° |
O4' | C1' | C2' | N9 | 130.9° | 119.3° |
O4' | C1' | C2' | H1' | 119.6° | 119.3° |
O4' | C1' | C2' | H2' | 129.5° | 119.7° |
O4' | C1' | N9 | H1' | 118.4° | 121.2° |
O4' | C1' | N9 | C8 | 48.0° | 23.5° |
O4' | C1' | N9 | C4 | 127.5° | 156.7° |
O3' | C3' | C2' | H3' | 119.8° | 127.7° |
O3' | C3' | C2' | O2' | 27.9° | 21.1° |
O3' | C3' | C2' | C1' | 146.7° | 139.5° |
O3' | C3' | C2' | H2' | 90.2° | 101.9° |
C3' | C2' | O2' | C1' | 112.9° | 113.8° |
C3' | C2' | O2' | H2' | 123.5° | 123.0° |
C3' | C2' | C1' | H2' | 122.9° | 118.5° |
C3' | C2' | O2' | HO2' | 180.0° | 180.0° |
C3' | C2' | C1' | N9 | 124.3° | 118.1° |
C3' | C2' | C1' | H1' | 126.3° | 120.5° |
H3' | C3' | C2' | O2' | 147.8° | 148.7° |
H3' | C3' | C2' | C1' | 93.5° | 92.9° |
H3' | C3' | C2' | H2' | 29.7° | 25.8° |
O2' | C2' | C1' | H2' | 118.1° | 123.1° |
O2' | C2' | C1' | N9 | 116.7° | 123.4° |
O2' | C2' | C1' | H1' | 7.3° | 2.1° |
C1' | C2' | O2' | HO2' | 67.1° | 66.1° |
C2' | C1' | N9 | H1' | 113.4° | 121.2° |
C2' | C1' | N9 | C8 | 80.2° | 94.1° |
C2' | C1' | N9 | C4 | 104.3° | 85.6° |
H2' | C2' | O2' | HO2' | 56.6° | 57.1° |
H2' | C2' | C1' | N9 | 1.4° | 0.4° |
H2' | C2' | C1' | H1' | 110.8° | 120.9° |
C1' | N9 | C8 | C4 | 176.0° | 179.8° |
C1' | N9 | C8 | N7 | 175.3° | 180.0° |
C1' | N9 | C8 | H8 | 4.7° | 0.0° |
C1' | N9 | C4 | C5 | 178.1° | 179.9° |
C1' | N9 | C4 | N3 | 3.3° | 0.7° |
H1' | C1' | N9 | C8 | 166.4° | 144.7° |
H1' | C1' | N9 | C4 | 9.2° | 35.6° |
N9 | C8 | N7 | H8 | 180.0° | 180.0° |
N9 | C8 | N7 | C5 | 2.3° | 0.0° |
C8 | N9 | C4 | C5 | 1.3° | 0.3° |
C8 | N9 | C4 | N3 | 179.8° | 179.5° |
C4 | N9 | C8 | N7 | 0.7° | 0.2° |
C4 | N9 | C8 | H8 | 179.3° | 179.8° |
N9 | C4 | C5 | N7 | 2.7° | 0.3° |
N9 | C4 | C5 | C6 | 176.2° | 179.8° |
N9 | C4 | C5 | N3 | 178.5° | 179.3° |
N9 | C4 | N3 | C2 | 177.6° | 179.7° |
C8 | N7 | C5 | C6 | 175.4° | 180.0° |
C8 | N7 | C5 | C4 | 3.0° | 0.2° |
H8 | C8 | N7 | C5 | 177.7° | 180.0° |
N7 | C5 | C6 | C4 | 171.7° | 179.8° |
N7 | C5 | C6 | O6 | 5.2° | 0.0° |
N7 | C5 | C6 | N1 | 177.3° | 180.0° |
N7 | C5 | C4 | N3 | 178.8° | 179.7° |
C5 | C6 | O6 | N1 | 177.4° | 180.0° |
C5 | C6 | N1 | C2 | 6.0° | 0.0° |
C5 | C6 | N1 | HN1 | 174.0° | 180.0° |
C6 | C5 | C4 | N3 | 5.4° | 0.5° |
C4 | C5 | C6 | O6 | 177.0° | 179.8° |
C4 | C5 | C6 | N1 | 5.5° | 0.2° |
C5 | C4 | N3 | C2 | 4.1° | 0.6° |
O6 | C6 | N1 | C2 | 176.1° | 180.0° |
O6 | C6 | N1 | HN1 | 3.9° | 0.0° |
C6 | N1 | C2 | HN1 | 180.0° | 180.0° |
C6 | N1 | C2 | N2 | 176.1° | 179.9° |
C6 | N1 | C2 | N3 | 5.6° | 0.1° |
N1 | C2 | N2 | N3 | 178.4° | 180.0° |
N1 | C2 | N2 | HN21 | 178.4° | 0.1° |
N1 | C2 | N2 | HN22 | 1.6° | 180.0° |
N1 | C2 | N3 | C4 | 3.9° | 0.3° |
HN1 | N1 | C2 | N2 | 4.0° | 0.0° |
HN1 | N1 | C2 | N3 | 174.3° | 179.9° |
C2 | N2 | HN21 | HN22 | 180.0° | 179.9° |
N2 | C2 | N3 | C4 | 177.8° | 179.7° |
N3 | C2 | N2 | HN21 | 0.0° | 179.9° |
N3 | C2 | N2 | HN22 | 180.0° | 0.0° |