2YW
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O28 | C20 | doub | 1.21Å | 1.22Å | |
C27 | C26 | doub | 1.38Å | 1.39Å | Aromatic |
C27 | C19 | sing | 1.40Å | 1.39Å | Aromatic |
C26 | C25 | sing | 1.38Å | 1.39Å | Aromatic |
C20 | C19 | sing | 1.48Å | 1.50Å | |
C20 | O21 | sing | 1.35Å | 1.45Å | |
C19 | C23 | doub | 1.40Å | 1.39Å | Aromatic |
C25 | C17 | sing | 1.51Å | 1.51Å | |
C25 | C24 | doub | 1.38Å | 1.39Å | Aromatic |
C17 | C16 | sing | 1.53Å | 1.53Å | |
C23 | C24 | sing | 1.38Å | 1.39Å | Aromatic |
C22 | O21 | sing | 1.45Å | 1.43Å | |
C16 | N15 | sing | 1.46Å | 1.46Å | |
N15 | C14 | sing | 1.38Å | 1.36Å | |
C14 | N13 | doub | 1.31Å | 1.35Å | Aromatic |
C14 | N12 | sing | 1.36Å | 1.33Å | Aromatic |
N13 | C4 | sing | 1.36Å | 1.36Å | Aromatic |
N12 | C3 | sing | 1.39Å | 1.36Å | Aromatic |
C4 | C3 | doub | 1.41Å | 1.40Å | Aromatic |
C4 | C5 | sing | 1.39Å | 1.40Å | Aromatic |
C3 | C2 | sing | 1.38Å | 1.39Å | Aromatic |
C5 | C6 | doub | 1.39Å | 1.40Å | Aromatic |
C2 | C1 | doub | 1.39Å | 1.39Å | Aromatic |
C6 | C1 | sing | 1.42Å | 1.39Å | Aromatic |
C6 | N8 | sing | 1.36Å | 1.35Å | |
C1 | C7 | sing | 1.47Å | 1.48Å | |
N8 | C9 | doub | 1.31Å | 1.35Å | |
C7 | O18 | doub | 1.22Å | 1.25Å | |
C7 | N11 | sing | 1.35Å | 1.34Å | |
C9 | N11 | sing | 1.37Å | 1.35Å | |
C9 | N10 | sing | 1.37Å | 1.35Å | |
C2 | H1 | sing | 1.08Å | 1.08Å | |
C5 | H2 | sing | 1.08Å | 1.08Å | |
N10 | H3 | sing | 0.97Å | 1.00Å | |
N10 | H4 | sing | 0.97Å | 1.00Å | |
N11 | H5 | sing | 0.97Å | 1.00Å | |
N12 | H6 | sing | 0.97Å | 1.00Å | |
N15 | H8 | sing | 0.97Å | 1.00Å | |
C16 | H9 | sing | 1.09Å | 1.10Å | |
C16 | H10 | sing | 1.09Å | 1.10Å | |
C17 | H11 | sing | 1.09Å | 1.10Å | |
C17 | H12 | sing | 1.09Å | 1.10Å | |
C22 | H13 | sing | 1.09Å | 1.10Å | |
C22 | H14 | sing | 1.09Å | 1.10Å | |
C22 | H15 | sing | 1.09Å | 1.10Å | |
C23 | H16 | sing | 1.08Å | 1.08Å | |
C24 | H17 | sing | 1.08Å | 1.08Å | |
C26 | H18 | sing | 1.08Å | 1.08Å | |
C27 | H19 | sing | 1.08Å | 1.08Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O28 | C20 | C19 | 119.9° | 120.0° |
O28 | C20 | O21 | 119.6° | 120.0° |
C26 | C27 | C19 | 119.5° | 119.8° |
C27 | C26 | C25 | 120.5° | 120.2° |
C27 | C26 | H18 | 119.8° | 119.9° |
C26 | C27 | H19 | 120.3° | 120.1° |
C27 | C19 | C20 | 118.7° | 120.2° |
C27 | C19 | C23 | 120.4° | 119.7° |
C19 | C27 | H19 | 120.2° | 120.1° |
C26 | C25 | C17 | 118.5° | 119.9° |
C26 | C25 | C24 | 120.0° | 120.3° |
C25 | C26 | H18 | 119.7° | 119.9° |
C19 | C20 | O21 | 120.5° | 120.0° |
C20 | C19 | C23 | 120.9° | 120.2° |
C20 | O21 | C22 | 119.6° | 116.9° |
C19 | C23 | C24 | 119.9° | 119.8° |
C19 | C23 | H16 | 120.0° | 120.0° |
C17 | C25 | C24 | 121.5° | 119.9° |
C25 | C17 | C16 | 112.8° | 109.5° |
C25 | C17 | H11 | 108.6° | 109.5° |
C25 | C17 | H12 | 108.7° | 109.5° |
C25 | C24 | C23 | 119.7° | 120.2° |
C25 | C24 | H17 | 120.2° | 119.9° |
C17 | C16 | N15 | 114.4° | 109.5° |
C17 | C16 | H9 | 108.2° | 109.5° |
C17 | C16 | H10 | 108.2° | 109.4° |
C16 | C17 | H11 | 108.6° | 109.5° |
C16 | C17 | H12 | 108.6° | 109.4° |
C24 | C23 | H16 | 120.0° | 120.1° |
C23 | C24 | H17 | 120.2° | 119.9° |
O21 | C22 | H13 | 109.5° | 109.5° |
O21 | C22 | H14 | 109.5° | 109.5° |
O21 | C22 | H15 | 109.5° | 109.4° |
C16 | N15 | C14 | 120.5° | 120.0° |
C16 | N15 | H8 | 106.6° | 120.0° |
N15 | C16 | H9 | 108.2° | 109.5° |
N15 | C16 | H10 | 108.2° | 109.5° |
N15 | C14 | N13 | 124.2° | 125.0° |
N15 | C14 | N12 | 122.0° | 125.0° |
C14 | N15 | H8 | 106.6° | 120.0° |
N13 | C14 | N12 | 113.8° | 110.0° |
C14 | N13 | C4 | 105.2° | 109.7° |
C14 | N12 | C3 | 104.9° | 107.2° |
C14 | N12 | H6 | 127.5° | 126.4° |
N13 | C4 | C3 | 107.7° | 107.0° |
N13 | C4 | C5 | 131.9° | 132.8° |
N12 | C3 | C4 | 108.4° | 106.1° |
N12 | C3 | C2 | 131.5° | 133.5° |
C3 | N12 | H6 | 127.5° | 126.4° |
C3 | C4 | C5 | 120.4° | 120.2° |
C4 | C3 | C2 | 120.1° | 120.5° |
C4 | C5 | C6 | 119.4° | 119.6° |
C4 | C5 | H2 | 120.3° | 120.2° |
C3 | C2 | C1 | 119.2° | 119.6° |
C3 | C2 | H1 | 120.4° | 120.2° |
C5 | C6 | C1 | 119.6° | 119.7° |
C5 | C6 | N8 | 121.3° | 121.2° |
C6 | C5 | H2 | 120.3° | 120.1° |
C2 | C1 | C6 | 121.2° | 120.4° |
C2 | C1 | C7 | 120.3° | 121.5° |
C1 | C2 | H1 | 120.4° | 120.2° |
C1 | C6 | N8 | 119.2° | 119.1° |
C6 | C1 | C7 | 118.5° | 118.1° |
C6 | N8 | C9 | 121.4° | 121.5° |
C1 | C7 | O18 | 121.7° | 121.2° |
C1 | C7 | N11 | 117.8° | 117.7° |
N8 | C9 | N11 | 122.3° | 123.1° |
N8 | C9 | N10 | 119.1° | 118.4° |
O18 | C7 | N11 | 120.5° | 121.2° |
C7 | N11 | C9 | 120.9° | 120.6° |
C7 | N11 | H5 | 119.6° | 119.7° |
N11 | C9 | N10 | 118.6° | 118.5° |
C9 | N11 | H5 | 119.5° | 119.6° |
C9 | N10 | H3 | 120.0° | 120.0° |
C9 | N10 | H4 | 120.0° | 120.0° |
H3 | N10 | H4 | 120.0° | 120.0° |
H9 | C16 | H10 | 109.5° | 109.5° |
H11 | C17 | H12 | 109.5° | 109.5° |
H13 | C22 | H14 | 109.4° | 109.5° |
H13 | C22 | H15 | 109.5° | 109.5° |
H14 | C22 | H15 | 109.5° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O28 | C20 | C19 | C27 | 20.7° | 179.7° |
O28 | C20 | C19 | O21 | 179.5° | 180.0° |
O28 | C20 | C19 | C23 | 159.7° | 0.0° |
O28 | C20 | O21 | C22 | 8.7° | 0.0° |
C26 | C27 | C19 | H19 | 180.0° | 179.6° |
C27 | C26 | C25 | H18 | 180.0° | 179.8° |
C26 | C27 | C19 | C20 | 180.0° | 179.8° |
C26 | C27 | C19 | C23 | 0.4° | 0.5° |
C27 | C26 | C25 | C17 | 179.9° | 179.7° |
C27 | C26 | C25 | C24 | 0.9° | 0.3° |
C19 | C27 | C26 | C25 | 0.7° | 0.5° |
C27 | C19 | C20 | C23 | 179.6° | 179.7° |
C27 | C19 | C20 | O21 | 158.8° | 0.3° |
C27 | C19 | C23 | C24 | 0.3° | 0.2° |
C27 | C19 | C23 | H16 | 179.8° | 179.8° |
C19 | C27 | C26 | H18 | 179.3° | 179.7° |
C26 | C25 | C17 | C24 | 179.0° | 180.0° |
C26 | C25 | C17 | C16 | 131.6° | 90.0° |
C26 | C25 | C24 | C23 | 0.8° | 0.0° |
C26 | C25 | C17 | H11 | 107.9° | 150.0° |
C26 | C25 | C17 | H12 | 11.1° | 30.0° |
C26 | C25 | C24 | H17 | 179.2° | 179.9° |
C25 | C26 | C27 | H19 | 179.3° | 180.0° |
C20 | C19 | C23 | C24 | 179.8° | 180.0° |
C19 | C20 | O21 | C22 | 171.8° | 180.0° |
C20 | C19 | C23 | H16 | 0.2° | 0.0° |
C20 | C19 | C27 | H19 | 0.1° | 0.2° |
O21 | C20 | C19 | C23 | 20.8° | 180.0° |
C20 | O21 | C22 | H13 | 180.0° | 60.0° |
C20 | O21 | C22 | H14 | 60.0° | 60.0° |
C20 | O21 | C22 | H15 | 60.0° | 180.0° |
C19 | C23 | C24 | C25 | 0.5° | 0.0° |
C19 | C23 | C24 | H16 | 180.0° | 180.0° |
C19 | C23 | C24 | H17 | 179.5° | 180.0° |
C23 | C19 | C27 | H19 | 179.6° | 180.0° |
C25 | C17 | C16 | H11 | 120.5° | 120.0° |
C25 | C17 | C16 | H12 | 120.5° | 120.0° |
C17 | C25 | C24 | C23 | 179.7° | 180.0° |
C25 | C17 | C16 | N15 | 67.2° | 180.0° |
C25 | C17 | C16 | H9 | 53.5° | 60.0° |
C25 | C17 | C16 | H10 | 172.0° | 60.0° |
C25 | C17 | H11 | H12 | 118.5° | 120.0° |
C17 | C25 | C24 | H17 | 0.3° | 0.0° |
C17 | C25 | C26 | H18 | 0.1° | 0.1° |
C24 | C25 | C17 | C16 | 49.5° | 90.0° |
C25 | C24 | C23 | H17 | 180.0° | 179.9° |
C24 | C25 | C17 | H11 | 71.0° | 30.0° |
C24 | C25 | C17 | H12 | 170.0° | 150.0° |
C25 | C24 | C23 | H16 | 179.6° | 180.0° |
C24 | C25 | C26 | H18 | 179.1° | 179.9° |
C17 | C16 | N15 | H9 | 120.7° | 120.0° |
C17 | C16 | N15 | H10 | 120.7° | 119.9° |
C17 | C16 | N15 | C14 | 178.2° | 180.0° |
C17 | C16 | N15 | H8 | 60.3° | 0.0° |
C17 | C16 | H9 | H10 | 117.8° | 120.0° |
C16 | C17 | H11 | H12 | 118.5° | 120.0° |
O21 | C22 | H13 | H14 | 120.0° | 120.0° |
O21 | C22 | H13 | H15 | 120.0° | 120.0° |
O21 | C22 | H14 | H15 | 120.0° | 120.0° |
C16 | N15 | C14 | H8 | 121.5° | 180.0° |
C16 | N15 | C14 | N13 | 16.8° | 180.0° |
C16 | N15 | C14 | N12 | 162.5° | 0.0° |
N15 | C16 | H9 | H10 | 117.8° | 120.0° |
N15 | C16 | C17 | H11 | 172.3° | 60.0° |
N15 | C16 | C17 | H12 | 53.3° | 60.0° |
N15 | C14 | N13 | N12 | 179.3° | 180.0° |
N15 | C14 | N13 | C4 | 179.9° | 180.0° |
N15 | C14 | N12 | C3 | 179.6° | 180.0° |
N15 | C14 | N12 | H6 | 0.4° | 0.0° |
C14 | N15 | C16 | H9 | 57.4° | 60.0° |
C14 | N15 | C16 | H10 | 61.1° | 60.1° |
N13 | C14 | N12 | C3 | 0.2° | 0.0° |
C14 | N13 | C4 | C3 | 1.0° | 0.1° |
C14 | N13 | C4 | C5 | 179.7° | 180.0° |
N13 | C14 | N12 | H6 | 179.8° | 179.9° |
N13 | C14 | N15 | H8 | 104.7° | 0.0° |
N12 | C14 | N13 | C4 | 0.8° | 0.0° |
C14 | N12 | C3 | H6 | 180.0° | 179.9° |
C14 | N12 | C3 | C4 | 0.5° | 0.1° |
C14 | N12 | C3 | C2 | 179.4° | 180.0° |
N12 | C14 | N15 | H8 | 76.0° | 180.0° |
N13 | C4 | C3 | N12 | 1.0° | 0.1° |
N13 | C4 | C3 | C5 | 178.9° | 179.9° |
N13 | C4 | C3 | C2 | 179.0° | 180.0° |
N13 | C4 | C5 | C6 | 178.7° | 179.8° |
N13 | C4 | C5 | H2 | 1.3° | 0.1° |
N12 | C3 | C4 | C2 | 179.9° | 179.9° |
N12 | C3 | C4 | C5 | 179.8° | 180.0° |
N12 | C3 | C2 | C1 | 179.6° | 180.0° |
N12 | C3 | C2 | H1 | 0.4° | 0.1° |
C3 | C4 | C5 | C6 | 0.2° | 0.3° |
C4 | C3 | C2 | C1 | 0.3° | 0.1° |
C4 | C3 | C2 | H1 | 179.7° | 180.0° |
C3 | C4 | C5 | H2 | 179.8° | 180.0° |
C4 | C3 | N12 | H6 | 179.5° | 180.0° |
C5 | C4 | C3 | C2 | 0.1° | 0.1° |
C4 | C5 | C6 | H2 | 180.0° | 179.7° |
C4 | C5 | C6 | C1 | 0.4° | 0.6° |
C4 | C5 | C6 | N8 | 179.9° | 180.0° |
C3 | C2 | C1 | H1 | 180.0° | 179.9° |
C3 | C2 | C1 | C6 | 0.6° | 0.3° |
C3 | C2 | C1 | C7 | 178.6° | 180.0° |
C2 | C3 | N12 | H6 | 0.6° | 0.1° |
C5 | C6 | C1 | C2 | 0.6° | 0.6° |
C5 | C6 | C1 | N8 | 179.6° | 179.5° |
C5 | C6 | C1 | C7 | 178.6° | 179.8° |
C5 | C6 | N8 | C9 | 176.9° | 180.0° |
C2 | C1 | C6 | C7 | 179.2° | 179.7° |
C2 | C1 | C6 | N8 | 179.7° | 179.9° |
C2 | C1 | C7 | O18 | 0.5° | 0.0° |
C2 | C1 | C7 | N11 | 178.3° | 179.9° |
C1 | C6 | N8 | C9 | 2.8° | 0.5° |
C6 | C1 | C7 | O18 | 179.8° | 179.6° |
C6 | C1 | C7 | N11 | 0.9° | 0.3° |
C6 | C1 | C2 | H1 | 179.5° | 179.7° |
C1 | C6 | C5 | H2 | 179.6° | 179.7° |
N8 | C6 | C1 | C7 | 1.0° | 0.3° |
C6 | N8 | C9 | N11 | 2.5° | 0.8° |
C6 | N8 | C9 | N10 | 179.0° | 180.0° |
N8 | C6 | C5 | H2 | 0.1° | 0.2° |
C1 | C7 | O18 | N11 | 178.8° | 179.9° |
C1 | C7 | N11 | C9 | 1.2° | 0.5° |
C7 | C1 | C2 | H1 | 1.3° | 0.1° |
C1 | C7 | N11 | H5 | 178.8° | 180.0° |
N8 | C9 | N11 | C7 | 0.4° | 0.8° |
N8 | C9 | N11 | N10 | 178.5° | 179.3° |
N8 | C9 | N10 | H3 | 0.0° | 0.0° |
N8 | C9 | N10 | H4 | 180.0° | 180.0° |
N8 | C9 | N11 | H5 | 179.5° | 179.8° |
O18 | C7 | N11 | C9 | 179.9° | 179.4° |
O18 | C7 | N11 | H5 | 0.1° | 0.0° |
C7 | N11 | C9 | H5 | 180.0° | 179.5° |
C7 | N11 | C9 | N10 | 178.9° | 179.9° |
N11 | C9 | N10 | H3 | 178.5° | 179.3° |
N11 | C9 | N10 | H4 | 1.5° | 0.7° |
C9 | N10 | H3 | H4 | 180.0° | 180.0° |
N10 | C9 | N11 | H5 | 1.1° | 0.5° |
H8 | N15 | C16 | H9 | 178.9° | 120.0° |
H8 | N15 | C16 | H10 | 60.4° | 120.0° |
H9 | C16 | C17 | H11 | 67.0° | 180.0° |
H9 | C16 | C17 | H12 | 174.0° | 59.9° |
H10 | C16 | C17 | H11 | 51.5° | 60.0° |
H10 | C16 | C17 | H12 | 67.4° | 180.0° |
H13 | C22 | H14 | H15 | 120.0° | 120.0° |
H16 | C23 | C24 | H17 | 0.4° | 0.1° |
H18 | C26 | C27 | H19 | 0.7° | 0.2° |