Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2YP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OAMCALdoub1.21Å1.24Å
CALOsing1.34Å1.27Å
CALCAIsing1.51Å1.53Å
CAJCAIsing1.53Å1.52Å
CAIOAHsing1.43Å1.44Å
OAHCA3sing1.43Å1.43Å
O6C6sing1.43Å1.43Å
OAGCAEdoub1.21Å1.23Å
CA3CA2sing1.53Å1.53Å
CA3CA4sing1.53Å1.53Å
C6C5sing1.53Å1.52Å
CAENADsing1.35Å1.32Å
CAECAFsing1.51Å1.50Å
CA2NADsing1.46Å1.46Å
CA2CA1sing1.54Å1.53Å
CA4O1sing1.43Å1.43Å
CA4CA5sing1.54Å1.53Å
O5C5sing1.43Å1.44Å
O5C1sing1.43Å1.41Å
O1C1sing1.43Å1.38Å
C5C4sing1.53Å1.52Å
OA6CA6sing1.44Å1.44Å
OA6CA1sing1.44Å1.42Å
CA6CA5sing1.55Å1.52Å
C1C2sing1.53Å1.52Å
CA1OA5sing1.44Å1.40Å
C4O4sing1.43Å1.43Å
C4C3sing1.53Å1.52Å
CA5OA5sing1.45Å1.45Å
OACCABdoub1.21Å1.24Å
C2C3sing1.53Å1.53Å
C2N2sing1.47Å1.45Å
C3O3sing1.43Å1.42Å
CABN2sing1.35Å1.34Å
CABCAAsing1.51Å1.49Å
C1H1sing1.09Å1.10Å
C2H2sing1.09Å1.10Å
C3H3sing1.09Å1.10Å
O3H4sing0.97Å0.95Å
C4H5sing1.09Å1.10Å
CAAH6sing1.09Å1.10Å
CAAH7sing1.09Å1.10Å
CAAH8sing1.09Å1.10Å
N2H9sing0.97Å1.00Å
O4H10sing0.97Å0.95Å
C5H11sing1.09Å1.10Å
C6H12sing1.09Å1.10Å
C6H13sing1.09Å1.10Å
O6H14sing0.97Å0.95Å
CA4H15sing1.09Å1.10Å
CA3H16sing1.09Å1.10Å
CAIH17sing1.09Å1.10Å
CAJH18sing1.09Å1.10Å
CAJH19sing1.09Å1.10Å
CAJH20sing1.09Å1.10Å
OH21sing0.97Å0.95Å
CA5H22sing1.09Å1.10Å
CA6H23sing1.09Å1.10Å
CA6H24sing1.09Å1.10Å
CA1H25sing1.09Å1.10Å
CA2H26sing1.09Å1.10Å
NADH27sing0.97Å1.00Å
CAFH28sing1.09Å1.10Å
CAFH29sing1.09Å1.10Å
CAFH30sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OAMCALO125.9°120.0°
OAMCALCAI119.2°120.0°
OCALCAI114.9°120.0°
CALOH21109.5°117.0°
CALCAICAJ113.5°109.5°
CALCAIOAH109.7°109.5°
CALCAIH17107.6°109.5°
CAJCAIOAH109.4°109.4°
CAJCAIH17107.7°109.5°
CAICAJH18109.5°109.5°
CAICAJH19109.5°109.5°
CAICAJH20109.5°109.6°
CAIOAHCA3112.0°114.0°
OAHCAIH17108.8°109.5°
OAHCA3CA2109.1°109.5°
OAHCA3CA4109.3°109.5°
OAHCA3H16109.2°109.5°
O6C6C5112.8°109.4°
O6C6H12108.6°109.4°
O6C6H13108.6°109.4°
C6O6H14109.5°114.0°
OAGCAENAD121.5°120.0°
OAGCAECAF122.3°120.0°
CA2CA3CA4113.2°109.3°
CA3CA2NAD111.1°109.6°
CA3CA2CA1113.0°108.8°
CA2CA3H16108.0°109.5°
CA3CA2H26107.1°109.6°
CA3CA4O1103.9°109.6°
CA3CA4CA5112.4°108.6°
CA3CA4H15109.3°109.8°
CA4CA3H16108.0°109.5°
C6C5O5107.5°109.5°
C6C5C4113.5°109.5°
C6C5H11108.6°109.5°
C5C6H12108.6°109.5°
C5C6H13108.6°109.5°
NADCAECAF116.1°120.0°
CAENADCA2123.7°120.0°
CAENADH27118.1°120.0°
CAECAFH28109.5°109.5°
CAECAFH29109.4°109.5°
CAECAFH30109.5°109.5°
NADCA2CA1110.1°109.6°
NADCA2H26108.1°109.6°
CA2NADH27118.2°120.0°
CA2CA1OA6111.9°108.2°
CA2CA1OA5109.6°107.5°
CA2CA1H25108.7°112.0°
CA1CA2H26107.1°109.7°
O1CA4CA5111.4°109.6°
CA4O1C1117.8°114.0°
O1CA4H15110.5°109.6°
CA4CA5CA6113.9°107.7°
CA4CA5OA5109.1°107.2°
CA5CA4H15109.2°109.6°
CA4CA5H22110.2°112.6°
C5O5C1111.3°114.1°
O5C5C4108.9°109.4°
O5C5H11109.8°109.5°
O5C1O1108.6°109.5°
O5C1C2110.5°109.4°
O5C1H1110.7°109.5°
O1C1C2106.7°109.5°
O1C1H1111.1°109.5°
C5C4O4108.5°109.5°
C5C4C3110.3°109.2°
C5C4H5109.2°109.6°
C4C5H11108.6°109.5°
CA6OA6CA1106.6°107.0°
OA6CA6CA5103.4°104.9°
OA6CA6H23111.0°110.4°
OA6CA6H24111.0°110.4°
OA6CA1OA5105.8°105.9°
OA6CA1H25110.2°111.4°
CA6CA5OA5101.9°102.6°
CA6CA5H22110.3°113.3°
CA5CA6H23111.0°110.4°
CA5CA6H24111.0°110.3°
C1C2C3110.9°109.2°
C1C2N2110.4°109.5°
C2C1H1109.2°109.5°
C1C2H2108.1°109.5°
CA1OA5CA5100.9°102.8°
OA5CA1H25110.5°111.5°
O4C4C3109.1°109.5°
O4C4H5110.6°109.5°
C4O4H10109.5°114.0°
C4C3C2112.1°109.0°
C4C3O3108.5°109.5°
C4C3H3108.7°109.6°
C3C4H5109.2°109.5°
OA5CA5H22111.3°112.8°
OACCABN2122.7°120.0°
OACCABCAA121.8°120.0°
C3C2N2110.5°109.5°
C2C3O3108.7°109.6°
C3C2H2108.0°109.5°
C2C3H3108.6°109.6°
C2N2CAB124.7°120.0°
N2C2H2109.0°109.6°
C2N2H9117.7°120.0°
O3C3H3110.2°109.6°
C3O3H4109.5°114.0°
N2CABCAA115.5°120.0°
CABN2H9117.7°120.0°
CABCAAH6109.5°109.4°
CABCAAH7109.4°109.5°
CABCAAH8109.5°109.4°
H6CAAH7109.5°109.5°
H6CAAH8109.5°109.5°
H7CAAH8109.5°109.5°
H12C6H13109.5°109.5°
H18CAJH19109.5°109.4°
H18CAJH20109.5°109.4°
H19CAJH20109.5°109.5°
H23CA6H24109.5°110.3°
H28CAFH29109.5°109.4°
H28CAFH30109.5°109.5°
H29CAFH30109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OAMCALOCAI179.8°180.0°
OAMCALCAICAJ35.9°115.0°
OAMCALCAIOAH158.6°5.0°
OAMCALCAIH1783.3°125.0°
OAMCALOH210.0°0.0°
OCALCAICAJ144.3°65.0°
OCALCAIOAH21.6°175.1°
OCALCAIH1796.6°55.0°
CALCAICAJOAH122.8°120.0°
CALCAICAJH17119.0°120.0°
CALCAIOAHH17117.4°120.0°
CALCAIOAHCA3154.2°150.0°
CALCAICAJH18180.0°180.0°
CALCAICAJH1960.0°60.1°
CALCAICAJH2060.0°60.0°
CAICALOH21179.8°180.0°
CAJCAIOAHH17117.5°120.0°
CAJCAIOAHCA380.7°90.1°
CAICAJH18H19120.0°120.0°
CAICAJH18H20120.0°120.1°
CAICAJH19H20120.0°120.1°
CAIOAHCA3CA2123.5°89.9°
CAIOAHCA3CA4112.3°150.2°
CAIOAHCA3H165.7°30.2°
OAHCAICAJH1857.2°60.0°
OAHCAICAJH19177.2°180.0°
OAHCAICAJH2062.9°60.0°
OAHCA3CA2CA4121.9°119.9°
OAHCA3CA2H16118.6°120.1°
OAHCA3CA4H16118.7°120.1°
OAHCA3CA2NAD143.8°171.8°
OAHCA3CA2CA191.8°68.4°
OAHCA3CA4O1148.6°172.3°
OAHCA3CA4CA590.8°68.0°
OAHCA3CA4H1530.6°51.9°
CA3OAHCAIH1736.8°29.9°
OAHCA3CA2H2626.0°51.5°
O6C6C5H12120.5°120.0°
O6C6C5H13120.5°120.0°
O6C6C5O560.6°65.1°
O6C6C5C459.9°175.0°
O6C6C5H11179.3°55.0°
O6C6H12H13118.5°119.9°
OAGCAENADCAF179.6°179.9°
OAGCAENADCA20.3°5.2°
OAGCAENADH27179.7°174.8°
OAGCAECAFH280.0°175.0°
OAGCAECAFH29120.0°55.0°
OAGCAECAFH30120.0°65.0°
CA2CA3CA4H16119.5°119.9°
CA3CA2NADCAE126.7°153.1°
CA3CA2NADCA1126.0°119.3°
CA3CA2NADH26117.3°120.3°
CA3CA2CA1H26117.7°119.8°
CA2CA3CA4O189.7°67.7°
CA2CA3CA4CA530.9°52.0°
CA3CA2CA1OA662.4°50.0°
CA3CA2CA1OA554.6°63.9°
CA2CA3CA4H15152.4°171.8°
CA3CA2CA1H25175.6°173.3°
CA3CA2NADH2753.3°26.9°
CA4CA3CA2NAD94.3°68.2°
CA4CA3CA2CA130.1°51.5°
CA3CA4O1CA5121.3°119.1°
CA3CA4O1H15117.1°120.6°
CA3CA4CA5H15121.5°120.0°
CA3CA4O1C1166.0°96.7°
CA3CA4CA5CA657.9°45.0°
CA3CA4CA5OA555.2°64.7°
CA3CA4CA5H22177.6°170.7°
CA4CA3CA2H26147.8°171.5°
C6C5O5C4123.3°120.0°
C6C5O5H11117.9°120.1°
C6C5O5C1170.4°178.9°
C6C5C4H11120.8°120.0°
C6C5C4O464.2°62.5°
C6C5C4C3176.4°177.6°
C6C5C4H556.4°57.7°
C5C6H12H13118.4°120.1°
C5C6O6H14180.0°180.0°
CAENADCA2H27180.0°180.0°
CAENADCA2CA1107.3°87.6°
CAENADCA2H269.4°32.8°
NADCAECAFH28179.6°5.1°
NADCAECAFH2960.4°125.0°
NADCAECAFH3059.6°115.0°
CAFCAENADCA2179.3°174.9°
CAFCAENADH270.6°5.1°
CAECAFH28H29120.0°120.0°
CAECAFH28H30120.0°120.1°
CAECAFH29H30120.0°120.0°
NADCA2CA1H26117.3°120.4°
NADCA2CA1OA6172.7°169.8°
NADCA2CA1OA570.3°55.9°
NADCA2CA3H1625.2°51.7°
NADCA2CA1H2550.6°67.0°
CA2CA1OA6CA692.2°89.0°
CA2CA1OA6OA5119.3°115.0°
CA2CA1OA6H25121.2°123.6°
CA2CA1OA5H25119.8°123.2°
CA2CA1OA5CA576.1°74.7°
CA1CA2CA3H16149.6°171.5°
CA1CA2NADH2772.7°92.4°
O1CA4CA5H15122.4°120.3°
CA4O1C1O576.0°71.6°
O1CA4CA5CA6174.0°164.8°
CA4O1C1C2164.9°168.5°
O1CA4CA5OA561.0°55.0°
CA4O1C1H146.0°48.5°
O1CA4CA3H1629.8°52.2°
O1CA4CA5H2261.5°69.6°
CA5CA4O1C172.8°144.3°
CA4CA5CA6OA689.7°90.1°
CA4CA5CA6OA5117.3°112.9°
CA4CA5CA6H22124.4°125.2°
CA4CA5OA5CA176.9°75.1°
CA4CA5OA5H22121.8°124.4°
CA5CA4CA3H16150.4°172.0°
CA4CA5CA6H2329.3°151.0°
CA4CA5CA6H24151.3°28.9°
C5O5C1O1178.2°178.9°
O5C5C4H11119.5°120.0°
C5O5C1C265.1°61.2°
O5C5C4O4176.1°177.5°
O5C5C4C356.7°57.6°
C5O5C1H155.9°58.8°
O5C5C4H563.3°62.3°
O5C5C6H12178.9°175.0°
O5C5C6H1359.9°54.9°
O5C1O1C2119.1°119.9°
O5C1O1H1121.9°120.0°
C1O5C5C466.3°61.2°
O5C1C2H1121.9°120.0°
O5C1C2C354.1°57.7°
O5C1C2N2176.8°177.5°
O5C1C2H264.1°62.3°
C1O5C5H1152.5°58.8°
O1C1C2H1120.2°120.0°
O1C1C2C3172.0°177.6°
O1C1C2N265.2°62.5°
O1C1C2H253.8°57.7°
C1O1CA4H1548.8°23.9°
C5C4O4C3120.2°119.7°
C5C4O4H5119.7°120.2°
C5C4C3H5120.0°120.0°
C5C4C3C248.5°57.0°
C5C4C3O3168.5°176.8°
C5C4C3H371.6°62.9°
C5C4O4H10180.0°60.3°
C4C5C6H1260.6°55.0°
C4C5C6H13179.6°65.0°
OA6CA6CA5H23119.0°118.9°
OA6CA6CA5H24119.0°119.0°
CA6OA6CA1OA527.1°26.0°
OA6CA6CA5OA527.6°22.8°
OA6CA6CA5H22145.9°144.7°
OA6CA6H23H24122.8°122.3°
CA6OA6CA1H25146.7°147.4°
CA1OA6CA6CA51.1°1.6°
OA6CA1OA5H25119.3°121.3°
OA6CA1OA5CA544.7°40.8°
CA1OA6CA6H23120.2°120.5°
CA1OA6CA6H24117.9°117.3°
OA6CA1CA2H2655.3°69.8°
CA6CA5OA5CA143.7°38.1°
CA6CA5OA5H22117.5°122.3°
CA6CA5CA4H1563.6°74.9°
CA5CA6H23H24122.9°122.2°
C1C2C3C446.8°57.0°
C1C2C3N2122.7°119.9°
C1C2C3H2118.3°119.9°
C1C2N2H2118.5°120.2°
C1C2C3O3166.7°176.8°
C1C2N2CAB95.1°90.2°
C1C2C3H373.4°62.9°
C1C2N2H984.9°89.7°
CA1OA5CA5H22161.3°160.4°
OA5CA1CA2H26172.4°176.3°
O4C4C3H5120.9°120.2°
O4C4C3C2167.6°176.9°
O4C4C3O372.4°63.3°
O4C4C3H347.5°57.0°
O4C4C5H1156.7°57.5°
C4C3C2O3119.9°119.8°
C4C3C2H3120.2°119.9°
C4C3C2N2169.5°176.9°
C4C3O3H3118.9°120.3°
C4C3C2H271.5°62.9°
C4C3O3H4180.0°60.5°
C3C4O4H1059.8°180.0°
C3C4C5H1162.8°62.4°
OA5CA5CA4H15176.7°175.3°
OA5CA5CA6H23146.6°96.1°
OA5CA5CA6H2491.5°141.8°
CA5OA5CA1H25164.0°162.1°
OACCABN2C25.3°4.3°
OACCABN2CAA179.2°180.0°
OACCABCAAH60.0°90.0°
OACCABCAAH7120.0°150.0°
OACCABCAAH8120.0°30.0°
OACCABN2H9174.7°175.6°
C3C2N2H2118.5°120.2°
C2C3O3H3118.9°120.2°
C3C2N2CAB141.9°150.1°
C3C2C1H167.8°62.4°
C2C3O3H457.9°180.0°
C2C3C4H571.5°63.0°
C3C2N2H938.1°29.9°
N2C2C3O370.6°63.3°
C2N2CABH9180.0°179.9°
C2N2CABCAA173.9°175.7°
N2C2C1H154.9°57.5°
N2C2C3H349.3°57.0°
O3C3C2H248.4°56.9°
O3C3C4H548.5°56.9°
CABN2C2H223.5°30.0°
N2CABCAAH6179.2°90.0°
N2CABCAAH760.8°30.0°
N2CABCAAH859.2°150.0°
CABCAAH6H7120.0°120.0°
CABCAAH6H8120.0°119.9°
CABCAAH7H8120.0°119.9°
CAACABN2H96.1°4.4°
H1C1C2H2174.0°177.7°
H2C2C3H3168.4°177.1°
H2C2N2H9156.5°150.1°
H3C3O3H461.0°59.8°
H3C3C4H5168.4°177.1°
H5C4O4H1060.2°59.8°
H5C4C5H11177.2°177.7°
H6CAAH7H8120.0°120.1°
H11C5C6H1260.2°65.0°
H11C5C6H1358.7°175.0°
H12C6O6H1459.5°60.0°
H13C6O6H1459.5°60.0°
H15CA4CA3H1688.1°68.2°
H15CA4CA5H2260.9°50.7°
H16CA3CA2H2692.6°68.6°
H17CAICAJH1861.0°60.0°
H17CAICAJH1959.1°60.0°
H17CAICAJH20179.0°180.0°
H18CAJH19H20120.0°119.9°
H22CA5CA6H2395.1°25.8°
H22CA5CA6H2426.9°96.3°
H25CA1CA2H2666.7°53.4°
H26CA2NADH27170.6°147.2°
H28CAFH29H30120.0°120.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon