2YG
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | C | sing | 1.47Å | 1.44Å | |
| C2 | C1 | sing | 1.53Å | 1.52Å | |
| C2 | C3 | sing | 1.53Å | 1.52Å | |
| C | C1 | sing | 1.53Å | 1.51Å | |
| C | C11 | sing | 1.51Å | 1.50Å | |
| C4 | C3 | sing | 1.53Å | 1.51Å | |
| C4 | N1 | sing | 1.47Å | 1.44Å | |
| O2 | C11 | doub | 1.21Å | 1.23Å | |
| N1 | C5 | sing | 1.35Å | 1.32Å | |
| C11 | O1 | sing | 1.34Å | 1.33Å | |
| C5 | C6 | sing | 1.51Å | 1.48Å | |
| C5 | O | doub | 1.21Å | 1.21Å | |
| N2 | C6 | sing | 1.47Å | 1.44Å | |
| C7 | C6 | sing | 1.53Å | 1.52Å | |
| C7 | C8 | sing | 1.53Å | 1.51Å | |
| C8 | C9 | sing | 1.53Å | 1.52Å | |
| C9 | C10 | sing | 1.53Å | 1.52Å | |
| C10 | N3 | sing | 1.47Å | 1.45Å | |
| O1 | H1 | sing | 0.97Å | 0.95Å | |
| C | H2 | sing | 1.09Å | 1.10Å | |
| N | H3 | sing | 1.01Å | 1.00Å | |
| N | H4 | sing | 1.01Å | 1.00Å | |
| C1 | H6 | sing | 1.09Å | 1.10Å | |
| C1 | H7 | sing | 1.09Å | 1.10Å | |
| C2 | H8 | sing | 1.09Å | 1.10Å | |
| C2 | H9 | sing | 1.09Å | 1.10Å | |
| C3 | H10 | sing | 1.09Å | 1.10Å | |
| C3 | H11 | sing | 1.09Å | 1.10Å | |
| C4 | H12 | sing | 1.09Å | 1.10Å | |
| C4 | H13 | sing | 1.09Å | 1.10Å | |
| N1 | H14 | sing | 0.97Å | 1.00Å | |
| C6 | H15 | sing | 1.09Å | 1.10Å | |
| N2 | H16 | sing | 1.01Å | 1.00Å | |
| N2 | H17 | sing | 1.01Å | 1.00Å | |
| C7 | H19 | sing | 1.09Å | 1.10Å | |
| C7 | H20 | sing | 1.09Å | 1.10Å | |
| C8 | H21 | sing | 1.09Å | 1.10Å | |
| C8 | H22 | sing | 1.09Å | 1.10Å | |
| C9 | H23 | sing | 1.09Å | 1.10Å | |
| C9 | H24 | sing | 1.09Å | 1.10Å | |
| C10 | H25 | sing | 1.09Å | 1.10Å | |
| C10 | H26 | sing | 1.09Å | 1.10Å | |
| N3 | H27 | sing | 1.01Å | 1.00Å | |
| N3 | H28 | sing | 1.01Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N | C | C1 | 111.1° | 109.5° |
| N | C | C11 | 108.8° | 109.5° |
| N | C | H2 | 110.2° | 109.5° |
| C | N | H3 | 109.5° | 111.0° |
| C | N | H4 | 109.4° | 111.0° |
| C1 | C2 | C3 | 109.1° | 109.5° |
| C2 | C1 | C | 112.3° | 109.5° |
| C2 | C1 | H6 | 108.8° | 109.5° |
| C2 | C1 | H7 | 108.8° | 109.4° |
| C1 | C2 | H8 | 109.5° | 109.4° |
| C1 | C2 | H9 | 109.6° | 109.4° |
| C2 | C3 | C4 | 111.1° | 109.5° |
| C3 | C2 | H8 | 109.6° | 109.5° |
| C3 | C2 | H9 | 109.5° | 109.5° |
| C2 | C3 | H10 | 109.1° | 109.5° |
| C2 | C3 | H11 | 109.1° | 109.5° |
| C1 | C | C11 | 107.9° | 109.5° |
| C1 | C | H2 | 109.3° | 109.4° |
| C | C1 | H6 | 108.7° | 109.5° |
| C | C1 | H7 | 108.7° | 109.5° |
| C | C11 | O2 | 120.9° | 120.0° |
| C | C11 | O1 | 118.8° | 120.0° |
| C11 | C | H2 | 109.4° | 109.5° |
| C3 | C4 | N1 | 109.0° | 109.5° |
| C4 | C3 | H10 | 109.0° | 109.5° |
| C4 | C3 | H11 | 109.0° | 109.4° |
| C3 | C4 | H12 | 109.6° | 109.4° |
| C3 | C4 | H13 | 109.6° | 109.4° |
| C4 | N1 | C5 | 119.5° | 120.0° |
| N1 | C4 | H12 | 109.6° | 109.5° |
| N1 | C4 | H13 | 109.6° | 109.5° |
| C4 | N1 | H14 | 120.3° | 120.0° |
| O2 | C11 | O1 | 120.3° | 120.0° |
| N1 | C5 | C6 | 118.4° | 120.0° |
| N1 | C5 | O | 123.5° | 120.0° |
| C5 | N1 | H14 | 120.3° | 120.0° |
| C11 | O1 | H1 | 109.5° | 117.0° |
| C6 | C5 | O | 118.1° | 120.0° |
| C5 | C6 | N2 | 108.4° | 109.5° |
| C5 | C6 | C7 | 111.7° | 109.5° |
| C5 | C6 | H15 | 108.9° | 109.5° |
| N2 | C6 | C7 | 109.9° | 109.5° |
| N2 | C6 | H15 | 109.5° | 109.4° |
| C6 | N2 | H16 | 109.5° | 111.0° |
| C6 | N2 | H17 | 109.4° | 111.0° |
| C6 | C7 | C8 | 109.9° | 109.5° |
| C7 | C6 | H15 | 108.4° | 109.4° |
| C6 | C7 | H19 | 109.4° | 109.4° |
| C6 | C7 | H20 | 109.4° | 109.4° |
| C7 | C8 | C9 | 111.9° | 109.4° |
| C8 | C7 | H19 | 109.4° | 109.5° |
| C8 | C7 | H20 | 109.4° | 109.5° |
| C7 | C8 | H21 | 108.8° | 109.4° |
| C7 | C8 | H22 | 108.9° | 109.4° |
| C8 | C9 | C10 | 117.0° | 109.4° |
| C9 | C8 | H21 | 108.9° | 109.5° |
| C9 | C8 | H22 | 108.9° | 109.5° |
| C8 | C9 | H23 | 107.5° | 109.5° |
| C8 | C9 | H24 | 107.6° | 109.5° |
| C9 | C10 | N3 | 108.0° | 109.4° |
| C10 | C9 | H23 | 107.6° | 109.5° |
| C10 | C9 | H24 | 107.5° | 109.5° |
| C9 | C10 | H25 | 109.8° | 109.4° |
| C9 | C10 | H26 | 109.8° | 109.5° |
| N3 | C10 | H25 | 109.8° | 109.4° |
| N3 | C10 | H26 | 109.8° | 109.5° |
| C10 | N3 | H27 | 109.5° | 111.0° |
| C10 | N3 | H28 | 109.5° | 111.0° |
| H3 | N | H4 | 109.5° | 111.0° |
| H6 | C1 | H7 | 109.5° | 109.4° |
| H8 | C2 | H9 | 109.5° | 109.5° |
| H10 | C3 | H11 | 109.5° | 109.4° |
| H12 | C4 | H13 | 109.5° | 109.5° |
| H16 | N2 | H17 | 109.4° | 111.0° |
| H19 | C7 | H20 | 109.5° | 109.5° |
| H21 | C8 | H22 | 109.5° | 109.5° |
| H23 | C9 | H24 | 109.5° | 109.5° |
| H25 | C10 | H26 | 109.5° | 109.6° |
| H27 | N3 | H28 | 109.5° | 111.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N | C | C1 | C2 | 65.5° | 65.0° |
| N | C | C1 | C11 | 119.2° | 120.0° |
| N | C | C1 | H2 | 121.8° | 120.0° |
| N | C | C11 | H2 | 120.5° | 120.1° |
| N | C | C11 | O2 | 30.1° | 20.0° |
| N | C | C11 | O1 | 150.2° | 159.7° |
| C | N | H3 | H4 | 120.0° | 124.0° |
| N | C | C1 | H6 | 174.1° | 55.0° |
| N | C | C1 | H7 | 55.0° | 175.0° |
| C1 | C2 | C3 | H8 | 119.9° | 120.0° |
| C1 | C2 | C3 | H9 | 119.9° | 120.0° |
| C2 | C1 | C | H6 | 120.4° | 120.0° |
| C2 | C1 | C | H7 | 120.4° | 120.0° |
| C2 | C1 | C | C11 | 175.3° | 175.0° |
| C1 | C2 | C3 | C4 | 174.9° | 180.0° |
| C2 | C1 | C | H2 | 56.4° | 55.0° |
| C2 | C1 | H6 | H7 | 118.8° | 120.0° |
| C1 | C2 | H8 | H9 | 120.2° | 120.0° |
| C1 | C2 | C3 | H10 | 64.8° | 60.0° |
| C1 | C2 | C3 | H11 | 54.7° | 60.0° |
| C3 | C2 | C1 | C | 171.6° | 180.0° |
| C2 | C3 | C4 | H10 | 120.3° | 120.0° |
| C2 | C3 | C4 | H11 | 120.3° | 120.0° |
| C2 | C3 | C4 | N1 | 171.2° | 180.0° |
| C3 | C2 | C1 | H6 | 51.2° | 60.0° |
| C3 | C2 | C1 | H7 | 68.0° | 60.0° |
| C3 | C2 | H8 | H9 | 120.2° | 120.0° |
| C2 | C3 | H10 | H11 | 119.3° | 120.0° |
| C2 | C3 | C4 | H12 | 68.9° | 60.0° |
| C2 | C3 | C4 | H13 | 51.2° | 60.0° |
| C1 | C | C11 | H2 | 118.8° | 119.9° |
| C1 | C | C11 | O2 | 90.6° | 100.0° |
| C1 | C | C11 | O1 | 89.1° | 80.3° |
| C1 | C | N | H3 | 180.0° | 176.0° |
| C1 | C | N | H4 | 60.0° | 60.0° |
| C | C1 | H6 | H7 | 118.7° | 120.0° |
| C | C1 | C2 | H8 | 51.7° | 60.0° |
| C | C1 | C2 | H9 | 68.4° | 60.0° |
| C | C11 | O2 | O1 | 179.7° | 179.7° |
| C | C11 | O1 | H1 | 179.7° | 179.7° |
| C11 | C | N | H3 | 61.3° | 64.0° |
| C11 | C | N | H4 | 58.7° | 60.0° |
| C11 | C | C1 | H6 | 54.9° | 65.0° |
| C11 | C | C1 | H7 | 64.3° | 55.0° |
| C3 | C4 | N1 | H12 | 119.9° | 120.0° |
| C3 | C4 | N1 | H13 | 119.9° | 120.0° |
| C3 | C4 | N1 | C5 | 93.2° | 180.0° |
| C4 | C3 | C2 | H8 | 55.0° | 60.0° |
| C4 | C3 | C2 | H9 | 65.1° | 60.0° |
| C4 | C3 | H10 | H11 | 119.2° | 120.0° |
| C3 | C4 | H12 | H13 | 120.2° | 120.0° |
| C3 | C4 | N1 | H14 | 86.8° | 0.1° |
| C4 | N1 | C5 | H14 | 180.0° | 179.9° |
| C4 | N1 | C5 | C6 | 173.5° | 180.0° |
| C4 | N1 | C5 | O | 4.5° | 0.0° |
| N1 | C4 | C3 | H10 | 50.9° | 60.0° |
| N1 | C4 | C3 | H11 | 68.6° | 60.0° |
| N1 | C4 | H12 | H13 | 120.2° | 120.0° |
| O2 | C11 | O1 | H1 | 0.0° | 0.0° |
| O2 | C11 | C | H2 | 150.6° | 140.0° |
| N1 | C5 | C6 | O | 178.1° | 180.0° |
| N1 | C5 | C6 | N2 | 91.5° | 160.0° |
| N1 | C5 | C6 | C7 | 29.7° | 80.0° |
| C5 | N1 | C4 | H12 | 26.7° | 60.0° |
| C5 | N1 | C4 | H13 | 146.9° | 60.0° |
| N1 | C5 | C6 | H15 | 149.4° | 40.0° |
| O1 | C11 | C | H2 | 29.7° | 39.7° |
| C5 | C6 | N2 | C7 | 122.4° | 120.0° |
| C5 | C6 | N2 | H15 | 118.7° | 120.1° |
| C5 | C6 | C7 | H15 | 120.0° | 120.1° |
| C5 | C6 | C7 | C8 | 142.3° | 175.0° |
| C6 | C5 | N1 | H14 | 6.5° | 0.1° |
| C5 | C6 | N2 | H16 | 180.0° | 64.0° |
| C5 | C6 | N2 | H17 | 60.0° | 60.0° |
| C5 | C6 | C7 | H19 | 97.6° | 65.0° |
| C5 | C6 | C7 | H20 | 22.3° | 55.0° |
| O | C5 | C6 | N2 | 90.4° | 20.0° |
| O | C5 | C6 | C7 | 148.3° | 100.0° |
| O | C5 | N1 | H14 | 175.5° | 179.9° |
| O | C5 | C6 | H15 | 28.6° | 140.0° |
| N2 | C6 | C7 | H15 | 119.6° | 119.9° |
| N2 | C6 | C7 | C8 | 97.3° | 65.0° |
| C6 | N2 | H16 | H17 | 120.0° | 124.0° |
| N2 | C6 | C7 | H19 | 22.8° | 55.0° |
| N2 | C6 | C7 | H20 | 142.6° | 175.0° |
| C6 | C7 | C8 | H19 | 120.1° | 120.0° |
| C6 | C7 | C8 | H20 | 120.1° | 120.0° |
| C6 | C7 | C8 | C9 | 58.1° | 180.0° |
| C7 | C6 | N2 | H16 | 57.7° | 176.0° |
| C7 | C6 | N2 | H17 | 177.6° | 60.1° |
| C6 | C7 | H19 | H20 | 119.8° | 119.9° |
| C6 | C7 | C8 | H21 | 178.5° | 60.0° |
| C6 | C7 | C8 | H22 | 62.3° | 60.0° |
| C7 | C8 | C9 | H21 | 120.4° | 120.0° |
| C7 | C8 | C9 | H22 | 120.4° | 120.0° |
| C7 | C8 | C9 | C10 | 84.9° | NaN° |
| C8 | C7 | C6 | H15 | 22.3° | 54.9° |
| C8 | C7 | H19 | H20 | 119.8° | 120.1° |
| C7 | C8 | H21 | H22 | 118.9° | 120.0° |
| C7 | C8 | C9 | H23 | 36.2° | 60.0° |
| C7 | C8 | C9 | H24 | 154.1° | 60.0° |
| C8 | C9 | C10 | H23 | 121.1° | 120.0° |
| C8 | C9 | C10 | H24 | 121.1° | 120.0° |
| C8 | C9 | C10 | N3 | 52.6° | 180.0° |
| C9 | C8 | C7 | H19 | 62.0° | 60.0° |
| C9 | C8 | C7 | H20 | 178.2° | 60.0° |
| C9 | C8 | H21 | H22 | 118.9° | 120.1° |
| C8 | C9 | H23 | H24 | 116.6° | 120.0° |
| C8 | C9 | C10 | H25 | 67.1° | 60.1° |
| C8 | C9 | C10 | H26 | 172.4° | 60.0° |
| C9 | C10 | N3 | H25 | 119.7° | 119.9° |
| C9 | C10 | N3 | H26 | 119.8° | 120.0° |
| C10 | C9 | C8 | H21 | 154.8° | 60.0° |
| C10 | C9 | C8 | H22 | 35.5° | 60.0° |
| C10 | C9 | H23 | H24 | 116.6° | 120.0° |
| C9 | C10 | H25 | H26 | 120.7° | 120.0° |
| C9 | C10 | N3 | H27 | 180.0° | 180.0° |
| C9 | C10 | N3 | H28 | 60.0° | 56.1° |
| N3 | C10 | C9 | H23 | 173.7° | 60.0° |
| N3 | C10 | C9 | H24 | 68.5° | 60.0° |
| N3 | C10 | H25 | H26 | 120.7° | 120.1° |
| C10 | N3 | H27 | H28 | 120.0° | 123.9° |
| H2 | C | N | H3 | 58.7° | 56.1° |
| H2 | C | N | H4 | 178.7° | 179.9° |
| H2 | C | C1 | H6 | 64.0° | 175.0° |
| H2 | C | C1 | H7 | 176.8° | 65.0° |
| H6 | C1 | C2 | H8 | 68.7° | 180.0° |
| H6 | C1 | C2 | H9 | 171.2° | 60.1° |
| H7 | C1 | C2 | H8 | 172.1° | 60.0° |
| H7 | C1 | C2 | H9 | 52.0° | NaN° |
| H8 | C2 | C3 | H10 | 175.2° | 180.0° |
| H8 | C2 | C3 | H11 | 65.3° | 60.0° |
| H9 | C2 | C3 | H10 | 55.1° | 60.0° |
| H9 | C2 | C3 | H11 | 174.6° | 180.0° |
| H10 | C3 | C4 | H12 | 170.8° | 180.0° |
| H10 | C3 | C4 | H13 | 69.0° | 60.1° |
| H11 | C3 | C4 | H12 | 51.4° | 60.0° |
| H11 | C3 | C4 | H13 | 171.5° | 180.0° |
| H12 | C4 | N1 | H14 | 153.3° | 119.9° |
| H13 | C4 | N1 | H14 | 33.2° | 120.1° |
| H15 | C6 | N2 | H16 | 61.3° | 56.1° |
| H15 | C6 | N2 | H17 | 58.7° | 180.0° |
| H15 | C6 | C7 | H19 | 142.4° | 175.0° |
| H15 | C6 | C7 | H20 | 97.7° | 65.1° |
| H19 | C7 | C8 | H21 | 58.4° | 180.0° |
| H19 | C7 | C8 | H22 | 177.7° | 60.0° |
| H20 | C7 | C8 | H21 | 61.5° | 60.0° |
| H20 | C7 | C8 | H22 | 57.8° | 180.0° |
| H21 | C8 | C9 | H23 | 84.1° | 179.9° |
| H21 | C8 | C9 | H24 | 33.7° | 59.9° |
| H22 | C8 | C9 | H23 | 156.6° | 60.0° |
| H22 | C8 | C9 | H24 | 85.5° | 180.0° |
| H23 | C9 | C10 | H25 | 53.9° | 179.9° |
| H23 | C9 | C10 | H26 | 66.5° | 60.0° |
| H24 | C9 | C10 | H25 | 171.8° | 59.9° |
| H24 | C9 | C10 | H26 | 51.3° | 180.0° |
| H25 | C10 | N3 | H27 | 60.2° | 60.1° |
| H25 | C10 | N3 | H28 | 179.7° | 176.0° |
| H26 | C10 | N3 | H27 | 60.3° | 60.0° |
| H26 | C10 | N3 | H28 | 59.8° | 63.9° |
