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2VM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CE2CZdoub1.38Å1.39ÅAromatic
CE2CD2sing1.38Å1.39ÅAromatic
CZCE1sing1.38Å1.39ÅAromatic
CD2CGdoub1.38Å1.39ÅAromatic
CE1CD1doub1.38Å1.39ÅAromatic
CGCD1sing1.38Å1.40ÅAromatic
CGCBsing1.51Å1.40Å
OBFCBDdoub1.21Å1.25Å
CALCAMsing1.53Å1.54Å
CALCAKsing1.53Å1.52Å
CAMCAIsing1.51Å1.43Å
CBDOBEsing1.34Å1.25Å
CBDCAKsing1.51Å1.55Å
CBCAsing1.53Å1.51Å
CAKCAJsing1.53Å1.50Å
CAICAEsing1.45Å1.35ÅAromatic
CAICAHdoub1.35Å1.37ÅAromatic
CAFCAEdoub1.40Å1.35ÅAromatic
CAFCAAsing1.38Å1.39ÅAromatic
CACsing1.51Å1.52Å
CANsing1.46Å1.49Å
CAJCAHsing1.51Å1.42Å
CAECADsing1.42Å1.34ÅAromatic
BRCAAsing1.89Å1.91Å
CAHNAGsing1.37Å1.35ÅAromatic
CAACABdoub1.39Å1.38ÅAromatic
COdoub1.21Å1.24Å
COXTsing1.34Å1.25Å
NCAPsing1.35Å1.34Å
CADNAGsing1.37Å1.33ÅAromatic
CADCACdoub1.39Å1.34ÅAromatic
NAGCAOsing1.47Å1.53Å
CABCACsing1.38Å1.38ÅAromatic
CAPOAQdoub1.21Å1.23Å
CAPCAOsing1.51Å1.54Å
CAMH1sing1.09Å1.10Å
CAMH2sing1.09Å1.10Å
CALH3sing1.09Å1.10Å
CALH4sing1.09Å1.10Å
CAKH5sing1.09Å1.10Å
OBEH6sing0.97Å0.95Å
CAJH7sing1.09Å1.10Å
CAJH8sing1.09Å1.10Å
CAFH9sing1.08Å1.08Å
CABH10sing1.08Å1.08Å
CACH11sing1.08Å1.08Å
CAOH12sing1.09Å1.10Å
CAOH13sing1.09Å1.10Å
NH14sing0.97Å1.00Å
CAH15sing1.09Å1.10Å
OXTH16sing0.97Å0.95Å
CBH17sing1.09Å1.10Å
CBH18sing1.09Å1.10Å
CD1H19sing1.08Å1.08Å
CE1H20sing1.08Å1.08Å
CZH21sing1.08Å1.08Å
CE2H22sing1.08Å1.08Å
CD2H23sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CZCE2CD2120.3°120.0°
CE2CZCE1120.3°120.0°
CE2CZH21119.9°120.0°
CZCE2H22119.8°120.0°
CE2CD2CG119.8°120.0°
CD2CE2H22119.8°120.0°
CE2CD2H23120.1°120.0°
CZCE1CD1119.3°120.0°
CZCE1H20120.3°120.0°
CE1CZH21119.9°120.0°
CD2CGCD1119.3°120.0°
CD2CGCB119.2°120.0°
CGCD2H23120.1°120.0°
CE1CD1CG120.8°120.0°
CE1CD1H19119.6°120.0°
CD1CE1H20120.3°120.0°
CD1CGCB121.2°120.0°
CGCD1H19119.6°120.0°
CGCBCA117.7°109.4°
CGCBH17107.4°109.5°
CGCBH18107.4°109.5°
OBFCBDOBE124.8°120.0°
OBFCBDCAK116.9°119.9°
CAMCALCAK107.4°109.3°
CALCAMCAI106.1°108.6°
CALCAMH1110.3°109.6°
CALCAMH2110.3°109.8°
CAMCALH3110.0°109.5°
CAMCALH4110.0°109.5°
CALCAKCBD110.3°109.5°
CALCAKCAJ107.8°109.4°
CAKCALH3110.0°109.5°
CAKCALH4110.0°109.5°
CALCAKH5108.8°109.5°
CAMCAICAE128.5°128.5°
CAMCAICAH124.0°124.4°
CAICAMH1110.3°109.6°
CAICAMH2110.3°109.6°
OBECBDCAK118.2°120.0°
CBDOBEH6109.5°117.0°
CBDCAKCAJ112.3°109.5°
CBDCAKH5108.5°109.5°
CBCAC111.8°109.5°
CBCAN104.7°109.5°
CBCAH15110.4°109.5°
CACBH17107.4°109.4°
CACBH18107.4°109.5°
CAKCAJCAH109.3°108.6°
CAJCAKH5109.1°109.5°
CAKCAJH7109.5°109.6°
CAKCAJH8109.5°109.6°
CAECAICAH107.5°107.1°
CAICAECAF131.2°132.7°
CAICAECAD108.1°106.0°
CAICAHCAJ125.1°123.7°
CAICAHNAG107.4°109.8°
CAECAFCAA120.7°116.8°
CAFCAECAD120.6°121.3°
CAECAFH9119.6°121.6°
CAFCAABR124.4°119.1°
CAFCAACAB117.8°121.9°
CAACAFH9119.6°121.6°
CCAN108.9°109.5°
CACO116.4°120.0°
CACOXT117.3°120.0°
CCAH15110.2°109.5°
CANCAP124.0°120.1°
CANH14118.0°120.0°
NCAH15110.7°109.4°
CAJCAHNAG127.5°126.5°
CAHCAJH7109.5°109.6°
CAHCAJH8109.5°109.6°
CAECADNAG108.6°107.3°
CAECADCAC120.9°120.7°
BRCAACAB117.8°119.0°
CAHNAGCAD108.4°109.8°
CAHNAGCAO127.7°125.1°
CAACABCAC119.8°122.2°
CAACABH10120.1°118.9°
OCOXT126.3°120.0°
COXTH16109.5°117.0°
NCAPOAQ123.2°120.0°
NCAPCAO116.4°120.0°
CAPNH14118.0°119.9°
NAGCADCAC130.6°132.0°
CADNAGCAO124.0°125.1°
CADCACCAB120.1°117.1°
CADCACH11119.9°121.5°
NAGCAOCAP112.0°109.5°
NAGCAOH12108.8°109.5°
NAGCAOH13108.8°109.5°
CACCABH10120.1°118.9°
CABCACH11119.9°121.4°
OAQCAPCAO120.4°120.0°
CAPCAOH12108.8°109.5°
CAPCAOH13108.8°109.4°
H1CAMH2109.4°109.6°
H3CALH4109.5°109.5°
H7CAJH8109.5°109.7°
H12CAOH13109.5°109.5°
H17CBH18109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CZCE2CD2H22180.0°179.8°
CE2CZCE1H21180.0°179.9°
CZCE2CD2CG1.5°0.6°
CE2CZCE1CD10.0°0.1°
CE2CZCE1H20180.0°180.0°
CZCE2CD2H23178.5°179.9°
CD2CE2CZCE10.0°0.2°
CE2CD2CGH23180.0°179.4°
CE2CD2CGCD12.9°0.6°
CE2CD2CGCB176.7°179.7°
CD2CE2CZH21180.0°179.7°
CZCE1CD1H20180.0°180.0°
CZCE1CD1CG1.4°0.0°
CZCE1CD1H19178.6°180.0°
CE1CZCE2H22180.0°179.9°
CD2CGCD1CE12.9°0.3°
CD2CGCD1CB173.6°179.6°
CD2CGCBCA159.8°90.3°
CD2CGCBH1738.6°149.7°
CD2CGCBH1879.0°29.6°
CD2CGCD1H19177.1°179.7°
CGCD2CE2H22178.5°179.6°
CE1CD1CGH19180.0°180.0°
CE1CD1CGCB176.5°180.0°
CD1CE1CZH21180.0°180.0°
CD1CGCBCA26.5°90.0°
CD1CGCBH17147.7°29.9°
CD1CGCBH1894.6°150.0°
CGCD1CE1H20178.6°180.0°
CD1CGCD2H23177.1°180.0°
CGCBCAH17121.2°120.0°
CGCBCAH18121.2°120.0°
CGCBCAC147.1°175.0°
CGCBCAN95.1°65.0°
CGCBCAH1524.1°55.0°
CGCBH17H18116.3°120.0°
CBCGCD1H193.5°0.0°
CBCGCD2H233.3°0.4°
OBFCBDCAKCAL58.9°120.0°
OBFCBDOBECAK178.0°179.9°
OBFCBDCAKCAJ179.1°0.0°
OBFCBDCAKH560.2°120.0°
OBFCBDOBEH60.0°0.0°
CAMCALCAKH3119.7°119.9°
CAMCALCAKH4119.6°120.0°
CALCAMCAIH1119.5°119.7°
CALCAMCAIH2119.5°119.9°
CAMCALCAKCBD164.3°169.9°
CAMCALCAKCAJ72.8°70.1°
CALCAMCAICAE158.3°163.6°
CALCAMCAICAH22.6°16.4°
CALCAMH1H2121.6°120.6°
CAMCALH3H4120.9°120.1°
CAMCALCAKH545.3°49.9°
CAKCALCAMCAI56.5°49.7°
CALCAKCBDOBE122.9°60.0°
CALCAKCBDCAJ120.2°120.0°
CALCAKCBDH5119.1°120.0°
CALCAKCAJH5118.0°120.0°
CALCAKCAJCAH48.1°50.3°
CAKCALCAMH1176.0°169.4°
CAKCALCAMH263.0°70.1°
CAKCALH3H4121.0°120.1°
CALCAKCAJH7168.1°170.0°
CALCAKCAJH871.8°69.5°
CAMCAICAECAH179.2°180.0°
CAMCAICAECAF0.5°0.1°
CAMCAICAHCAJ1.1°0.1°
CAMCAICAECAD179.3°180.0°
CAMCAICAHNAG179.7°179.9°
CAICAMH1H2121.5°120.3°
CAICAMCALH3176.2°169.6°
CAICAMCALH463.2°70.3°
OBECBDCAKCAJ2.7°179.9°
OBECBDCAKH5118.0°60.0°
CBDCAKCAJH5120.3°120.0°
CBDCAKCAJCAH169.8°170.2°
CBDCAKCALH344.6°50.0°
CBDCAKCALH476.1°70.1°
CAKCBDOBEH6178.0°180.0°
CBDCAKCAJH770.2°70.0°
CBDCAKCAJH849.9°50.5°
CBCACN115.3°120.0°
CBCACH15123.1°120.0°
CBCANH15119.0°120.0°
CBCACO114.8°120.0°
CBCACOXT66.7°60.0°
CBCANCAP147.6°155.0°
CBCANH1432.5°25.0°
CACBH17H18116.3°120.0°
CAKCAJCAHCAI13.9°16.9°
CAKCAJCAHH7120.0°119.7°
CAKCAJCAHH8120.0°119.7°
CAKCAJCAHNAG167.0°163.1°
CAJCAKCALH3167.5°170.0°
CAJCAKCALH446.8°49.9°
CAKCAJH7H8120.1°120.5°
CAICAECAFCAD179.8°179.9°
CAICAECAFCAA179.8°180.0°
CAECAICAHCAJ179.7°179.9°
CAECAICAHNAG0.5°0.1°
CAICAECADNAG0.3°0.0°
CAICAECADCAC179.7°180.0°
CAECAICAMH138.8°43.9°
CAECAICAMH282.2°76.5°
CAICAECAFH90.2°0.1°
CAHCAICAECAF179.7°179.9°
CAICAHCAJNAG179.0°180.0°
CAHCAICAECAD0.1°0.0°
CAICAHNAGCAD0.7°0.1°
CAICAHNAGCAO179.8°180.0°
CAHCAICAMH1142.1°136.2°
CAHCAICAMH296.9°103.5°
CAICAHCAJH7133.9°136.6°
CAICAHCAJH8106.0°102.8°
CAECAFCAAH9180.0°180.0°
CAECAFCAABR179.7°180.0°
CAECAFCAACAB0.7°0.0°
CAFCAECADNAG179.9°180.0°
CAFCAECADCAC0.1°0.0°
CAACAFCAECAD0.4°0.0°
CAFCAABRCAB179.6°180.0°
CAFCAACABCAC0.4°0.0°
CAFCAACABH10179.6°180.0°
CCANH15121.3°120.0°
CACOOXT178.4°180.0°
CCANCAP92.7°84.9°
CCANH1487.3°95.0°
CACOXTH16178.4°180.0°
CCACBH1725.9°65.0°
CCACBH1891.7°55.0°
NCACO130.0°0.1°
NCACOXT48.6°180.0°
CANCAPH14180.0°180.0°
CANCAPOAQ3.2°0.1°
CANCAPCAO178.0°180.0°
NCACBH17143.7°55.0°
NCACBH1826.1°175.0°
CAJCAHNAGCAD179.8°179.9°
CAJCAHNAGCAO1.0°0.0°
CAHCAJCAKH569.8°69.7°
CAHCAJH7H8120.0°120.4°
CAECADNAGCAH0.6°0.1°
CAECADNAGCAC180.0°180.0°
CAECADNAGCAO179.8°180.0°
CAECADCACCAB0.3°0.0°
CADCAECAFH9179.6°180.0°
CAECADCACH11179.7°179.9°
BRCAACABCAC179.9°180.0°
BRCAACAFH90.3°0.0°
BRCAACABH100.1°0.1°
CAHNAGCADCAO179.2°179.9°
CAHNAGCADCAC179.4°179.9°
CAHNAGCAOCAP72.8°90.0°
NAGCAHCAJH747.0°43.4°
NAGCAHCAJH873.0°77.1°
CAHNAGCAOH12166.9°150.0°
CAHNAGCAOH1347.6°30.0°
CAACABCACCAD0.1°0.0°
CAACABCACH10180.0°179.9°
CABCAACAFH9179.3°180.0°
CAACABCACH11179.9°179.9°
OCCAH158.4°120.0°
OCOXTH160.0°0.0°
OXTCCAH15170.2°60.0°
NCAPCAONAG38.9°180.0°
NCAPOAQCAO178.7°179.9°
NCAPCAOH1281.5°60.0°
NCAPCAOH13159.3°60.0°
CAPNCAH1528.6°35.0°
NAGCADCACCAB179.6°180.0°
CADNAGCAOCAP108.2°90.1°
NAGCADCACH110.4°0.0°
CADNAGCAOH1212.2°29.9°
CADNAGCAOH13131.4°149.9°
CACCADNAGCAO0.2°0.0°
CADCACCABH11180.0°180.0°
CADCACCABH10179.9°180.0°
NAGCAOCAPOAQ142.3°0.0°
NAGCAOCAPH12120.4°120.0°
NAGCAOCAPH13120.4°120.0°
NAGCAOH12H13118.8°120.1°
OAQCAPCAOH1297.3°119.9°
OAQCAPCAOH1321.9°120.1°
OAQCAPNH14176.8°179.9°
CAPCAOH12H13118.8°120.0°
CAOCAPNH142.0°0.0°
H1CAMCALH364.3°70.7°
H1CAMCALH456.3°49.4°
H2CAMCALH356.7°49.8°
H2CAMCALH4177.4°169.9°
H3CALCAKH574.3°70.0°
H4CALCAKH5165.0°169.9°
H5CAKCAJH750.1°50.0°
H5CAKCAJH8170.2°170.6°
H10CABCACH110.1°0.0°
H14NCAH15151.4°145.0°
H15CACBH1797.1°175.0°
H15CACBH18145.2°65.0°
H19CD1CE1H201.4°0.0°
H20CE1CZH210.0°0.0°
H21CZCE2H220.0°0.1°
H22CE2CD2H231.5°0.2°

222415

PDB entries from 2024-07-10

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