Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2VF

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2C13doub1.21Å1.22Å
C12C13sing1.51Å1.50Å
C12Nsing1.46Å1.47Å
C13N1sing1.35Å1.34Å
C2C3doub1.39Å1.39ÅAromatic
C2C1sing1.38Å1.39ÅAromatic
NC3sing1.38Å1.35ÅAromatic
NC11sing1.37Å1.34ÅAromatic
C3C4sing1.41Å1.48ÅAromatic
C1Cdoub1.39Å1.38ÅAromatic
C10C11sing1.51Å1.50Å
C10C8sing1.53Å1.54Å
C11C5doub1.35Å1.48ÅAromatic
CCLsing1.74Å1.79Å
CC14sing1.38Å1.39ÅAromatic
C4C5sing1.46Å1.47ÅAromatic
C4C14doub1.40Å1.39ÅAromatic
C8C9sing1.51Å1.51Å
C8C7sing1.53Å1.53Å
C5C6sing1.51Å1.49Å
O1C9doub1.21Å1.24Å
C9Osing1.34Å1.32Å
C6C7sing1.53Å1.52Å
N1H1sing0.97Å1.00Å
N1H2sing0.97Å1.00Å
C12H3sing1.09Å1.10Å
C12H4sing1.09Å1.10Å
C2H5sing1.08Å1.08Å
C1H6sing1.08Å1.08Å
C10H7sing1.09Å1.10Å
C10H8sing1.09Å1.10Å
C8H9sing1.09Å1.10Å
OH10sing0.97Å0.95Å
C7H11sing1.09Å1.10Å
C7H12sing1.09Å1.10Å
C6H13sing1.09Å1.10Å
C6H14sing1.09Å1.10Å
C14H15sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2C13C12117.9°120.0°
O2C13N1122.8°120.1°
C13C12N114.3°109.5°
C12C13N1119.3°120.0°
C13C12H3108.2°109.5°
C13C12H4108.2°109.5°
C12NC3124.3°125.1°
C12NC11124.9°125.0°
NC12H3108.3°109.4°
NC12H4108.2°109.5°
C13N1H1120.0°119.9°
C13N1H2120.0°120.0°
C3C2C1119.2°120.0°
C2C3N132.5°133.3°
C2C3C4117.3°119.4°
C3C2H5120.4°120.0°
C2C1C122.7°120.6°
C1C2H5120.4°120.0°
C2C1H6118.6°119.7°
C3NC11110.8°109.9°
NC3C4110.2°107.3°
NC11C10127.2°126.7°
NC11C5109.7°109.7°
C3C4C5104.0°105.9°
C3C4C14122.2°119.9°
C1CCL114.6°119.8°
C1CC14121.6°120.3°
CC1H6118.6°119.7°
C11C10C8109.4°108.5°
C10C11C5123.1°123.6°
C11C10H7109.5°109.6°
C11C10H8109.5°109.6°
C10C8C9112.5°109.5°
C10C8C7113.7°109.5°
C8C10H7109.5°109.7°
C8C10H8109.5°109.6°
C10C8H9107.7°109.5°
C11C5C4105.2°107.3°
C11C5C6124.3°124.7°
CLCC14123.8°119.8°
CC14C4117.0°119.7°
CC14H15121.5°120.1°
C5C4C14133.8°134.3°
C4C5C6130.4°127.9°
C4C14H15121.5°120.2°
C9C8C7106.5°109.5°
C8C9O1124.5°120.0°
C8C9O115.8°120.0°
C9C8H9108.2°109.5°
C8C7C6113.1°109.3°
C7C8H9107.9°109.4°
C8C7H11108.5°109.5°
C8C7H12108.5°109.5°
C5C6C7106.8°108.4°
C5C6H13110.1°109.6°
C5C6H14110.1°109.8°
O1C9O119.7°120.0°
C9OH10109.5°117.0°
C6C7H11108.5°109.5°
C6C7H12108.5°109.5°
C7C6H13110.1°109.7°
C7C6H14110.1°109.7°
H1N1H2120.0°120.0°
H3C12H4109.5°109.5°
H7C10H8109.5°109.8°
H11C7H12109.5°109.5°
H13C6H14109.5°109.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2C13C12N1179.2°179.7°
O2C13C12N178.9°0.0°
O2C13N1H10.0°0.0°
O2C13N1H2180.0°180.0°
O2C13C12H360.3°120.0°
O2C13C12H458.2°120.0°
C13C12NH3120.7°120.0°
C13C12NH4120.7°120.0°
C13C12NC385.8°90.0°
C13C12NC1195.5°90.3°
C12C13N1H1179.2°179.7°
C12C13N1H20.9°0.3°
C13C12H3H4117.8°120.0°
NC12C13N11.9°179.7°
C12NC3C22.3°0.1°
C12NC3C11178.8°179.7°
C12NC3C4178.9°179.9°
C12NC11C101.1°0.0°
C12NC11C5178.4°179.9°
NC12H3H4117.8°120.0°
C13N1H1H2180.0°180.0°
N1C13C12H3118.9°60.3°
N1C13C12H4122.6°59.7°
C3C2C1H5180.0°180.0°
C2C3NC4178.8°180.0°
C2C3NC11178.9°179.7°
C3C2C1C1.1°0.0°
C2C3C4C5179.5°179.8°
C2C3C4C140.3°0.0°
C3C2C1H6178.9°179.9°
C1C2C3N179.6°179.9°
C1C2C3C40.9°0.0°
C2C1CH6180.0°179.9°
C2C1CCL179.9°179.9°
C2C1CC140.7°0.0°
C3NC11C10179.9°179.7°
C3NC11C50.4°0.3°
NC3C4C50.6°0.2°
NC3C4C14179.3°180.0°
C3NC12H3153.5°30.0°
C3NC12H434.9°150.0°
NC3C2H50.4°0.1°
C11NC3C40.1°0.3°
NC11C10C5179.4°180.0°
NC11C10C8171.7°163.1°
NC11C5C40.8°0.2°
NC11C5C6179.6°179.9°
C11NC12H325.2°149.7°
C11NC12H4143.8°29.7°
NC11C10H768.3°77.1°
NC11C10H851.7°43.4°
C3C4C5C110.8°0.0°
C3C4C14C0.1°0.0°
C3C4C5C14179.8°179.7°
C3C4C5C6179.5°179.7°
C4C3C2H5179.1°180.0°
C3C4C14H15179.9°180.0°
C1CCLC14179.4°180.0°
C1CC14C40.0°0.0°
CC1C2H5178.9°179.9°
C1CC14H15180.0°180.0°
C11C10C8H7120.0°119.7°
C11C10C8H8120.0°119.7°
C10C11C5C4179.8°179.9°
C11C10C8C9159.9°170.3°
C11C10C8C738.7°50.2°
C10C11C5C60.9°0.1°
C11C10H7H8120.0°120.4°
C11C10C8H980.9°69.8°
C8C10C11C57.7°16.9°
C10C8C9C7125.3°120.1°
C10C8C9H9118.9°120.0°
C10C8C7H9119.5°120.0°
C10C8C9O117.8°0.0°
C10C8C9O161.7°180.0°
C10C8C7C665.4°70.0°
C8C10H7H8120.0°120.5°
C10C8C7H1155.1°49.9°
C10C8C7H12174.1°170.0°
C11C5C4C6178.7°179.8°
C11C5C4C14179.1°179.7°
C11C5C6C720.4°16.4°
C5C11C10H7112.3°102.9°
C5C11C10H8127.7°136.5°
C11C5C6H1399.2°136.0°
C11C5C6H14140.0°103.4°
CLCC14C4179.4°179.9°
CLCC1H60.1°0.0°
CLCC14H150.6°0.0°
CC14C4C5179.9°179.7°
CC14C4H15180.0°180.0°
C14CC1H6179.3°179.9°
C4C5C6C7158.1°163.4°
C4C5C6H1382.3°43.7°
C4C5C6H1438.5°76.9°
C5C4C14H150.0°0.3°
C14C4C5C60.4°0.0°
C9C8C7H9116.0°120.0°
C8C9O1O179.5°180.0°
C9C8C7C6170.0°170.0°
C9C8C10H739.9°50.6°
C9C8C10H880.1°70.1°
C8C9OH10179.5°180.0°
C9C8C7H1169.4°70.1°
C9C8C7H1249.5°50.0°
C8C7C6C551.5°49.5°
C7C8C9O1107.5°120.1°
C7C8C9O73.0°59.9°
C8C7C6H11120.5°119.9°
C8C7C6H12120.5°120.0°
C7C8C10H781.3°69.5°
C7C8C10H8158.6°169.9°
C8C7H11H12118.3°120.1°
C8C7C6H1368.1°169.1°
C8C7C6H14171.0°70.3°
C5C6C7H13119.6°119.6°
C5C6C7H14119.6°119.9°
C5C6C7H1169.1°70.4°
C5C6C7H12172.0°169.5°
C5C6H13H14121.2°120.6°
O1C9C8H9136.7°120.0°
O1C9OH100.0°0.0°
OC9C8H942.8°60.0°
C6C7C8H954.1°50.0°
C6C7H11H12118.3°120.1°
C7C6H13H14121.2°120.5°
H5C2C1H61.1°0.0°
H7C10C8H9159.1°170.5°
H8C10C8H939.1°49.9°
H9C8C7H11174.6°169.9°
H9C8C7H1266.5°70.0°
H11C7C6H13171.4°49.2°
H11C7C6H1450.5°169.7°
H12C7C6H1352.4°70.9°
H12C7C6H1468.4°49.7°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon