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2VD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CZCE1doub1.38Å1.39ÅAromatic
CZCE2sing1.38Å1.39ÅAromatic
CE1CD1sing1.38Å1.39ÅAromatic
CE2CD2doub1.38Å1.40ÅAromatic
OAQCAPdoub1.21Å1.23Å
CD1CGdoub1.38Å1.40ÅAromatic
CAOCAPsing1.51Å1.55Å
CAONAGsing1.46Å1.49Å
CD2CGsing1.38Å1.40ÅAromatic
CAPNsing1.35Å1.35Å
CACCABdoub1.38Å1.39ÅAromatic
CACCADsing1.39Å1.35ÅAromatic
CGCBsing1.51Å1.41Å
NAGCADsing1.36Å1.33ÅAromatic
NAGCAHsing1.37Å1.34ÅAromatic
CABCAAsing1.39Å1.39ÅAromatic
CADCAEdoub1.42Å1.35ÅAromatic
NCAsing1.46Å1.48Å
CAHCAJsing1.51Å1.43Å
CAHCAIdoub1.35Å1.35ÅAromatic
CAJCAKsing1.53Å1.50Å
CACBsing1.53Å1.53Å
CACsing1.51Å1.54Å
CAACAFdoub1.37Å1.40ÅAromatic
CAABRsing1.89Å1.88Å
CAECAIsing1.45Å1.36ÅAromatic
CAECAFsing1.40Å1.36ÅAromatic
CAICAMsing1.51Å1.41Å
CAKCBDsing1.51Å1.57Å
CAKCALsing1.53Å1.51Å
OBECBDdoub1.21Å1.26Å
CBDOBFsing1.34Å1.25Å
COdoub1.21Å1.25Å
COXTsing1.34Å1.25Å
CAMCALsing1.53Å1.51Å
CAMH1sing1.09Å1.10Å
CAMH2sing1.09Å1.10Å
CALH3sing1.09Å1.10Å
CALH4sing1.09Å1.10Å
CAKH5sing1.09Å1.10Å
OBFH6sing0.97Å0.95Å
CAJH7sing1.09Å1.10Å
CAJH8sing1.09Å1.10Å
CAFH9sing1.08Å1.08Å
CABH10sing1.08Å1.08Å
CACH11sing1.08Å1.08Å
CAOH12sing1.09Å1.10Å
CAOH13sing1.09Å1.10Å
NH14sing0.97Å1.00Å
CAH15sing1.09Å1.10Å
OXTH16sing0.97Å0.95Å
CBH17sing1.09Å1.10Å
CBH18sing1.09Å1.10Å
CD1H19sing1.08Å1.08Å
CE1H20sing1.08Å1.08Å
CZH21sing1.08Å1.08Å
CE2H22sing1.08Å1.08Å
CD2H23sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CE1CZCE2119.8°120.0°
CZCE1CD1120.1°120.0°
CZCE1H20120.0°120.0°
CE1CZH21120.1°120.0°
CZCE2CD2120.4°120.0°
CE2CZH21120.1°120.0°
CZCE2H22119.8°120.0°
CE1CD1CG120.5°120.0°
CE1CD1H19119.8°120.0°
CD1CE1H20120.0°120.0°
CE2CD2CG119.8°120.0°
CD2CE2H22119.8°120.0°
CE2CD2H23120.1°120.0°
OAQCAPCAO118.9°120.0°
OAQCAPN121.3°120.0°
CD1CGCD2119.5°120.0°
CD1CGCB119.4°120.0°
CGCD1H19119.8°120.0°
CAPCAONAG113.8°109.5°
CAOCAPN119.7°120.0°
CAPCAOH12108.4°109.5°
CAPCAOH13108.4°109.4°
CAONAGCAD125.2°125.1°
CAONAGCAH124.9°125.1°
NAGCAOH12108.4°109.5°
NAGCAOH13108.4°109.4°
CD2CGCB121.1°120.0°
CGCD2H23120.1°120.0°
CAPNCA120.2°120.0°
CAPNH14119.9°119.9°
CABCACCAD120.5°116.9°
CACCABCAA118.9°122.3°
CACCABH10120.6°118.8°
CABCACH11119.8°121.6°
CACCADNAG131.0°132.1°
CACCADCAE121.5°120.6°
CADCACH11119.7°121.5°
CGCBCA104.5°109.5°
CGCBH17110.7°109.5°
CGCBH18110.7°109.5°
CADNAGCAH109.9°109.8°
NAGCADCAE107.5°107.3°
NAGCAHCAJ127.3°126.5°
NAGCAHCAI106.7°109.8°
CABCAACAF118.5°122.1°
CABCAABR117.4°118.9°
CAACABH10120.5°118.9°
CADCAECAI107.8°106.0°
CADCAECAF119.8°121.3°
NCACB109.6°109.5°
NCAC111.8°109.5°
CANH14119.9°120.0°
NCAH15109.2°109.5°
CAJCAHCAI126.0°123.7°
CAHCAJCAK111.0°108.6°
CAHCAJH7109.1°109.6°
CAHCAJH8109.1°109.7°
CAHCAICAE108.1°107.1°
CAHCAICAM122.6°124.4°
CAJCAKCBD112.0°109.5°
CAJCAKCAL109.4°109.5°
CAJCAKH5108.7°109.5°
CAKCAJH7109.1°109.6°
CAKCAJH8109.1°109.6°
CBCAC109.3°109.5°
CBCAH15108.5°109.5°
CACBH17110.7°109.5°
CACBH18110.7°109.4°
CACO116.2°120.0°
CACOXT118.5°120.0°
CCAH15108.4°109.5°
CAFCAABR124.1°119.0°
CAACAFCAE120.9°116.8°
CAACAFH9119.5°121.6°
CAICAECAF132.4°132.7°
CAECAICAM129.4°128.5°
CAECAFH9119.6°121.6°
CAICAMCAL108.2°108.5°
CAICAMH1109.8°109.6°
CAICAMH2109.8°109.8°
CBDCAKCAL110.2°109.5°
CAKCBDOBE120.1°120.0°
CAKCBDOBF115.9°120.0°
CBDCAKH5107.9°109.5°
CAKCALCAM110.3°109.3°
CAKCALH3109.3°109.5°
CAKCALH4109.3°109.5°
CALCAKH5108.6°109.5°
OBECBDOBF124.0°120.0°
CBDOBFH6109.5°117.0°
OCOXT125.3°120.0°
COXTH16109.5°117.0°
CALCAMH1109.8°109.7°
CALCAMH2109.8°109.6°
CAMCALH3109.3°109.5°
CAMCALH4109.3°109.5°
H1CAMH2109.5°109.6°
H3CALH4109.5°109.5°
H7CAJH8109.5°109.7°
H12CAOH13109.4°109.4°
H17CBH18109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CE1CZCE2H21180.0°180.0°
CZCE1CD1H20180.0°179.9°
CE1CZCE2CD20.5°0.2°
CZCE1CD1CG0.2°0.1°
CZCE1CD1H19179.7°179.9°
CE1CZCE2H22179.5°180.0°
CE2CZCE1CD10.4°0.1°
CZCE2CD2H22180.0°179.8°
CZCE2CD2CG0.4°0.5°
CE2CZCE1H20179.5°180.0°
CZCE2CD2H23179.6°180.0°
CE1CD1CGH19180.0°180.0°
CE1CD1CGCD20.1°0.2°
CE1CD1CGCB179.3°180.0°
CD1CE1CZH21179.6°179.9°
CE2CD2CGCD10.2°0.5°
CE2CD2CGH23180.0°179.5°
CE2CD2CGCB179.2°179.7°
CD2CE2CZH21179.5°179.8°
OAQCAPCAON178.8°180.0°
OAQCAPCAONAG168.0°0.0°
OAQCAPNCA0.8°0.0°
OAQCAPCAOH1247.3°120.0°
OAQCAPCAOH1371.4°120.0°
OAQCAPNH14179.2°180.0°
CD1CGCD2CB179.4°179.8°
CD1CGCBCA82.2°90.0°
CD1CGCBH17158.6°30.0°
CD1CGCBH1837.0°150.0°
CGCD1CE1H20179.7°180.0°
CD1CGCD2H23179.8°180.0°
CAPCAONAGH12120.7°120.1°
CAPCAONAGH13120.7°120.0°
CAPCAONAGCAD91.5°89.9°
CAPCAONAGCAH89.1°90.0°
CAOCAPNCA179.6°180.0°
CAPCAOH12H13118.0°120.0°
CAOCAPNH140.4°0.0°
NAGCAOCAPN13.2°180.0°
CAONAGCADCAC1.1°0.1°
CAONAGCADCAH179.5°179.9°
CAONAGCADCAE179.8°179.9°
CAONAGCAHCAJ0.5°0.1°
CAONAGCAHCAI179.4°179.9°
NAGCAOH12H13118.0°120.0°
CD2CGCBCA97.2°90.2°
CD2CGCBH1722.1°149.8°
CD2CGCBH18143.6°29.7°
CD2CGCD1H19179.9°179.8°
CGCD2CE2H22179.6°179.7°
CAPNCAH14180.0°180.0°
CAPNCACB115.3°155.0°
CAPNCAC123.3°85.0°
NCAPCAOH12133.9°60.0°
NCAPCAOH13107.4°60.0°
CAPNCAH153.4°35.0°
CABCACCADH11180.0°179.9°
CABCACCADNAG179.3°179.9°
CACCABCAAH10180.0°179.9°
CABCACCADCAE0.2°0.1°
CACCABCAACAF0.0°0.1°
CACCABCAABR178.9°179.9°
CACCADNAGCAE179.1°180.0°
CACCADNAGCAH179.4°180.0°
CADCACCABCAA0.3°0.1°
CACCADCAECAI179.8°180.0°
CACCADCAECAF0.2°0.0°
CADCACCABH10179.7°180.0°
CGCBCAN64.0°65.0°
CGCBCAH17119.2°120.0°
CGCBCAH18119.2°120.0°
CGCBCAC173.1°175.0°
CGCBCAH1555.1°55.0°
CGCBH17H18122.3°120.0°
CBCGCD1H190.8°0.0°
CBCGCD2H230.8°0.2°
CADNAGCAHCAJ179.0°180.0°
CADNAGCAHCAI0.1°0.0°
NAGCADCAECAI0.5°0.1°
NAGCADCAECAF179.1°180.0°
NAGCADCACH110.7°0.0°
CADNAGCAOH12147.9°150.0°
CADNAGCAOH1329.2°30.0°
CAHNAGCADCAE0.3°0.0°
NAGCAHCAJCAI178.7°179.9°
NAGCAHCAJCAK170.8°163.2°
NAGCAHCAICAE0.4°0.0°
NAGCAHCAICAM179.5°179.9°
NAGCAHCAJH769.0°43.6°
NAGCAHCAJH850.6°76.9°
CAHNAGCAOH1231.5°30.1°
CAHNAGCAOH13150.2°150.0°
CABCAACAFBR178.8°180.0°
CABCAACAFCAE0.4°0.0°
CABCAACAFH9179.6°179.9°
CAACABCACH11179.7°180.0°
CADCAECAICAH0.6°0.1°
CADCAECAFCAA0.5°0.0°
CADCAECAICAF179.5°179.9°
CADCAECAICAM179.3°179.9°
CADCAECAFH9179.5°180.0°
CAECADCACH11179.8°180.0°
NCACBC122.9°120.0°
NCACBH15119.1°120.0°
NCACH15120.4°120.0°
NCACO174.7°0.0°
NCACOXT6.0°180.0°
NCACBH1755.2°175.0°
NCACBH18176.8°55.0°
CAHCAJCAKH7120.2°119.7°
CAHCAJCAKH8120.2°119.9°
CAJCAHCAICAE179.4°180.0°
CAJCAHCAICAM0.6°0.0°
CAHCAJCAKCBD161.7°170.2°
CAHCAJCAKCAL39.3°50.2°
CAHCAJCAKH579.1°69.8°
CAHCAJH7H8119.3°120.5°
CAICAHCAJCAK7.9°16.8°
CAHCAICAECAM180.0°179.9°
CAHCAICAECAF178.9°180.0°
CAHCAICAMCAL22.9°16.5°
CAHCAICAMH196.9°136.3°
CAHCAICAMH2142.7°103.2°
CAICAHCAJH7112.3°136.5°
CAICAHCAJH8128.1°103.0°
CAJCAKCBDCAL121.9°120.0°
CAJCAKCBDH5119.6°120.0°
CAJCAKCALH5118.5°120.0°
CAJCAKCBDOBE22.1°0.1°
CAJCAKCBDOBF156.7°179.9°
CAJCAKCALCAM65.3°70.1°
CAJCAKCALH354.8°170.0°
CAJCAKCALH4174.5°49.9°
CAKCAJH7H8119.3°120.4°
CBCACH15118.1°120.0°
CBCACO63.7°120.0°
CBCACOXT115.5°60.0°
CBCANH1464.8°25.0°
CACBH17H18122.4°120.0°
CACOOXT179.2°180.0°
CCANH1456.6°95.0°
CACOXTH16179.1°180.0°
CCACBH1767.7°55.0°
CCACBH1853.9°65.0°
CAACAFCAECAI180.0°179.9°
CAACAFCAEH9180.0°179.9°
CAFCAACABH10180.0°180.0°
BRCAACAFCAE179.2°180.0°
BRCAACAFH90.8°0.1°
BRCAACABH101.1°0.0°
CAECAICAMCAL157.1°163.4°
CAECAICAMH183.1°43.6°
CAECAICAMH237.3°76.9°
CAICAECAFH90.0°0.0°
CAFCAECAICAM1.1°0.1°
CAICAMCALCAK55.1°49.8°
CAICAMCALH1119.8°119.7°
CAICAMCALH2119.8°119.9°
CAICAMH1H2120.6°120.6°
CAICAMCALH365.0°169.7°
CAICAMCALH4175.2°70.2°
CBDCAKCALH5118.1°120.0°
CAKCBDOBEOBF178.7°180.0°
CBDCAKCALCAM171.2°169.9°
CBDCAKCALH368.7°50.0°
CBDCAKCALH451.1°70.1°
CAKCBDOBFH6178.7°180.0°
CBDCAKCAJH741.5°70.1°
CBDCAKCAJH878.0°50.3°
CALCAKCBDOBE99.9°120.0°
CALCAKCBDOBF81.4°60.0°
CAKCALCAMH3120.1°120.0°
CAKCALCAMH4120.1°120.0°
CAKCALCAMH164.7°169.5°
CAKCALCAMH2174.9°70.1°
CAKCALH3H4119.6°120.1°
CALCAKCAJH780.9°169.9°
CALCAKCAJH8159.6°69.7°
OBECBDCAKH5141.7°120.0°
OBECBDOBFH60.0°0.0°
OBFCBDCAKH537.1°60.0°
OCCAH1554.4°120.0°
OCOXTH160.0°0.0°
OXTCCAH15126.4°60.0°
CALCAMH1H2120.6°120.4°
CAMCALH3H4119.6°120.0°
CAMCALCAKH553.2°49.9°
H1CAMCALH3175.2°70.5°
H1CAMCALH455.4°49.5°
H2CAMCALH354.7°49.9°
H2CAMCALH465.0°169.9°
H3CALCAKH5173.3°70.0°
H4CALCAKH567.0°169.9°
H5CAKCAJH7160.7°49.9°
H5CAKCAJH841.1°170.3°
H10CABCACH110.3°0.1°
H14NCAH15176.6°145.0°
H15CACBH17174.3°65.0°
H15CACBH1864.1°175.0°
H19CD1CE1H200.3°0.0°
H20CE1CZH210.5°0.0°
H21CZCE2H220.5°0.0°
H22CE2CD2H230.4°0.2°

222415

PDB entries from 2024-07-10

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