2TM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N4 | C4 | sing | 1.38Å | 1.43Å | |
| N3 | C4 | doub | 1.33Å | 1.34Å | |
| N3 | C2 | sing | 1.33Å | 1.35Å | |
| O2 | C2 | doub | 1.22Å | 1.24Å | |
| C4 | C5 | sing | 1.41Å | 1.39Å | |
| C2 | N1 | sing | 1.35Å | 1.35Å | |
| C5 | C6 | doub | 1.35Å | 1.39Å | |
| N1 | C6 | sing | 1.36Å | 1.35Å | |
| N1 | C1' | sing | 1.47Å | 1.49Å | |
| O2' | C2' | sing | 1.43Å | 1.39Å | |
| C2' | C1' | sing | 1.55Å | 1.47Å | |
| C2' | C3' | sing | 1.55Å | 1.46Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| C3' | O3' | sing | 1.43Å | 1.38Å | |
| C3' | C4' | sing | 1.54Å | 1.46Å | |
| O4' | C4' | sing | 1.44Å | 1.40Å | |
| C4' | C5' | sing | 1.53Å | 1.48Å | |
| C5' | O5' | sing | 1.43Å | 1.38Å | |
| O5' | PA | sing | 1.61Å | 1.59Å | |
| O1A | PA | doub | 1.48Å | 1.58Å | |
| PA | O2A | sing | 1.61Å | 1.50Å | |
| PA | C1 | sing | 1.82Å | 1.83Å | |
| O2B | PB | doub | 1.48Å | 1.51Å | |
| C1 | PB | sing | 1.82Å | 1.83Å | |
| PB | O3B | sing | 1.61Å | 1.59Å | |
| PB | O1B | sing | 1.61Å | 1.57Å | |
| O3B | PG | sing | 1.61Å | 1.59Å | |
| PG | O1G | doub | 1.48Å | 1.51Å | |
| PG | O2G | sing | 1.61Å | 1.51Å | |
| PG | O3G | sing | 1.61Å | 1.52Å | |
| C5' | H1 | sing | 1.09Å | 1.10Å | |
| C5' | H2 | sing | 1.09Å | 1.10Å | |
| C4' | H3 | sing | 1.09Å | 1.10Å | |
| C3' | H4 | sing | 1.09Å | 1.10Å | |
| O3' | H5 | sing | 0.97Å | 0.95Å | |
| C2' | H6 | sing | 1.09Å | 1.10Å | |
| O2' | H7 | sing | 0.97Å | 0.95Å | |
| C1' | H8 | sing | 1.09Å | 1.10Å | |
| C5 | H9 | sing | 1.08Å | 1.08Å | |
| C6 | H10 | sing | 1.08Å | 1.08Å | |
| O3G | H11 | sing | 0.97Å | 0.95Å | |
| O2G | H12 | sing | 0.97Å | 0.95Å | |
| O1B | H13 | sing | 0.97Å | 0.95Å | |
| O2A | H14 | sing | 0.97Å | 0.95Å | |
| N4 | H15 | sing | 0.97Å | 1.00Å | |
| N4 | H16 | sing | 0.97Å | 1.00Å | |
| C1 | H17 | sing | 1.09Å | 1.10Å | |
| C1 | H18 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N4 | C4 | N3 | 120.1° | 120.2° |
| N4 | C4 | C5 | 120.5° | 120.2° |
| C4 | N4 | H15 | 120.0° | 120.0° |
| C4 | N4 | H16 | 120.0° | 120.0° |
| C4 | N3 | C2 | 121.2° | 120.7° |
| N3 | C4 | C5 | 119.3° | 119.7° |
| N3 | C2 | O2 | 117.7° | 119.4° |
| N3 | C2 | N1 | 121.0° | 121.1° |
| O2 | C2 | N1 | 121.3° | 119.5° |
| C4 | C5 | C6 | 118.4° | 118.9° |
| C4 | C5 | H9 | 120.8° | 120.5° |
| C2 | N1 | C6 | 119.8° | 120.4° |
| C2 | N1 | C1' | 122.2° | 119.8° |
| C5 | C6 | N1 | 120.2° | 119.3° |
| C6 | C5 | H9 | 120.8° | 120.5° |
| C5 | C6 | H10 | 119.9° | 120.3° |
| C6 | N1 | C1' | 118.0° | 119.8° |
| N1 | C6 | H10 | 119.9° | 120.4° |
| N1 | C1' | C2' | 112.7° | 110.7° |
| N1 | C1' | O4' | 110.6° | 110.7° |
| N1 | C1' | H8 | 107.2° | 110.6° |
| O2' | C2' | C1' | 109.9° | 110.9° |
| O2' | C2' | C3' | 113.3° | 111.0° |
| O2' | C2' | H6 | 110.5° | 110.8° |
| C2' | O2' | H7 | 109.5° | 114.0° |
| C1' | C2' | C3' | 104.2° | 102.1° |
| C2' | C1' | O4' | 110.6° | 103.5° |
| C1' | C2' | H6 | 109.3° | 110.9° |
| C2' | C1' | H8 | 107.4° | 110.6° |
| C2' | C3' | O3' | 112.8° | 110.5° |
| C2' | C3' | C4' | 105.3° | 104.2° |
| C2' | C3' | H4 | 109.1° | 110.6° |
| C3' | C2' | H6 | 109.4° | 110.9° |
| C1' | O4' | C4' | 105.6° | 106.9° |
| O4' | C1' | H8 | 108.0° | 110.6° |
| O3' | C3' | C4' | 110.4° | 110.5° |
| O3' | C3' | H4 | 110.1° | 110.4° |
| C3' | O3' | H5 | 109.5° | 114.0° |
| C3' | C4' | O4' | 110.8° | 107.4° |
| C3' | C4' | C5' | 113.2° | 109.9° |
| C3' | C4' | H3 | 107.3° | 109.9° |
| C4' | C3' | H4 | 109.0° | 110.5° |
| O4' | C4' | C5' | 110.3° | 109.9° |
| O4' | C4' | H3 | 108.0° | 109.9° |
| C4' | C5' | O5' | 111.0° | 109.4° |
| C4' | C5' | H1 | 109.1° | 109.5° |
| C4' | C5' | H2 | 109.1° | 109.5° |
| C5' | C4' | H3 | 107.1° | 109.9° |
| C5' | O5' | PA | 119.4° | 123.0° |
| O5' | C5' | H1 | 109.1° | 109.5° |
| O5' | C5' | H2 | 109.1° | 109.5° |
| O5' | PA | O1A | 109.0° | 109.5° |
| O5' | PA | O2A | 109.3° | 109.5° |
| O5' | PA | C1 | 110.0° | 109.5° |
| O1A | PA | O2A | 109.4° | 109.5° |
| O1A | PA | C1 | 109.6° | 109.5° |
| O2A | PA | C1 | 109.5° | 109.5° |
| PA | O2A | H14 | 109.5° | 114.0° |
| PA | C1 | PB | 119.1° | 109.5° |
| PA | C1 | H17 | 107.0° | 109.5° |
| PA | C1 | H18 | 107.0° | 109.5° |
| O2B | PB | C1 | 108.4° | 109.4° |
| O2B | PB | O3B | 109.3° | 109.5° |
| O2B | PB | O1B | 109.1° | 109.5° |
| C1 | PB | O3B | 110.2° | 109.5° |
| C1 | PB | O1B | 109.6° | 109.4° |
| PB | C1 | H17 | 107.0° | 109.5° |
| PB | C1 | H18 | 107.0° | 109.5° |
| O3B | PB | O1B | 110.2° | 109.5° |
| PB | O3B | PG | 122.2° | 134.0° |
| PB | O1B | H13 | 109.5° | 114.0° |
| O3B | PG | O1G | 108.8° | 109.5° |
| O3B | PG | O2G | 110.6° | 109.5° |
| O3B | PG | O3G | 109.6° | 109.5° |
| O1G | PG | O2G | 109.0° | 109.5° |
| O1G | PG | O3G | 109.6° | 109.5° |
| O2G | PG | O3G | 109.3° | 109.4° |
| PG | O2G | H12 | 109.5° | 114.0° |
| PG | O3G | H11 | 109.5° | 114.0° |
| H1 | C5' | H2 | 109.5° | 109.5° |
| H15 | N4 | H16 | 120.0° | 120.0° |
| H17 | C1 | H18 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N4 | C4 | N3 | C5 | 179.9° | 179.5° |
| N4 | C4 | N3 | C2 | 180.0° | 180.0° |
| N4 | C4 | C5 | C6 | 179.9° | 180.0° |
| N4 | C4 | C5 | H9 | 0.1° | 0.3° |
| C4 | N4 | H15 | H16 | 180.0° | 180.0° |
| C4 | N3 | C2 | O2 | 179.9° | 179.7° |
| C4 | N3 | C2 | N1 | 0.0° | 0.3° |
| N3 | C4 | C5 | C6 | 0.0° | 0.5° |
| N3 | C4 | C5 | H9 | 180.0° | 179.7° |
| N3 | C4 | N4 | H15 | 0.0° | 0.0° |
| N3 | C4 | N4 | H16 | 180.0° | 180.0° |
| N3 | C2 | O2 | N1 | 179.9° | 180.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.5° |
| N3 | C2 | N1 | C6 | 0.1° | 0.0° |
| N3 | C2 | N1 | C1' | 180.0° | 180.0° |
| O2 | C2 | N1 | C6 | 179.9° | 180.0° |
| O2 | C2 | N1 | C1' | 0.1° | 0.0° |
| C4 | C5 | C6 | H9 | 180.0° | 179.8° |
| C4 | C5 | C6 | N1 | 0.1° | 0.2° |
| C4 | C5 | C6 | H10 | 179.9° | 179.7° |
| C5 | C4 | N4 | H15 | 179.9° | 179.5° |
| C5 | C4 | N4 | H16 | 0.1° | 0.5° |
| C2 | N1 | C6 | C5 | 0.2° | 0.0° |
| C2 | N1 | C6 | C1' | 179.8° | 180.0° |
| C2 | N1 | C1' | C2' | 68.0° | 65.0° |
| C2 | N1 | C1' | O4' | 167.6° | 49.1° |
| C2 | N1 | C1' | H8 | 50.1° | 172.0° |
| C2 | N1 | C6 | H10 | 179.8° | 180.0° |
| C5 | C6 | N1 | H10 | 180.0° | 180.0° |
| C5 | C6 | N1 | C1' | 180.0° | 180.0° |
| C6 | N1 | C1' | C2' | 112.2° | 115.0° |
| C6 | N1 | C1' | O4' | 12.2° | 130.9° |
| C6 | N1 | C1' | H8 | 129.8° | 8.0° |
| N1 | C6 | C5 | H9 | 179.9° | 180.0° |
| N1 | C1' | C2' | O2' | 129.2° | 86.2° |
| N1 | C1' | C2' | O4' | 124.5° | 118.6° |
| N1 | C1' | C2' | H8 | 117.9° | 123.0° |
| N1 | C1' | C2' | C3' | 109.1° | 155.5° |
| N1 | C1' | O4' | H8 | 117.1° | 122.9° |
| N1 | C1' | O4' | C4' | 120.2° | 158.5° |
| N1 | C1' | C2' | H6 | 7.8° | 37.4° |
| C1' | N1 | C6 | H10 | 0.0° | 0.0° |
| O2' | C2' | C1' | C3' | 121.7° | 118.3° |
| O2' | C2' | C1' | H6 | 121.4° | 123.5° |
| O2' | C2' | C3' | H6 | 123.8° | 123.6° |
| O2' | C2' | C1' | O4' | 106.4° | 155.3° |
| O2' | C2' | C3' | O3' | 19.5° | 20.4° |
| O2' | C2' | C3' | C4' | 100.9° | 139.1° |
| O2' | C2' | C3' | H4 | 142.2° | 102.2° |
| O2' | C2' | C1' | H8 | 11.3° | 36.8° |
| C1' | C2' | C3' | H6 | 116.7° | 118.2° |
| C2' | C1' | O4' | H8 | 117.3° | 118.5° |
| C1' | C2' | C3' | O3' | 139.0° | 97.8° |
| C1' | C2' | C3' | C4' | 18.5° | 20.8° |
| C2' | C1' | O4' | C4' | 5.5° | 39.9° |
| C1' | C2' | C3' | H4 | 98.3° | 139.5° |
| C1' | C2' | O2' | H7 | 180.0° | 180.0° |
| C3' | C2' | C1' | O4' | 15.4° | 37.0° |
| C2' | C3' | O3' | C4' | 117.5° | 114.8° |
| C2' | C3' | O3' | H4 | 122.1° | 122.7° |
| C2' | C3' | C4' | H4 | 116.9° | 118.8° |
| C2' | C3' | C4' | O4' | 16.5° | 2.0° |
| C2' | C3' | C4' | C5' | 140.9° | 121.4° |
| C2' | C3' | C4' | H3 | 101.2° | 117.5° |
| C2' | C3' | O3' | H5 | 180.0° | 65.2° |
| C3' | C2' | O2' | H7 | 63.9° | 67.2° |
| C3' | C2' | C1' | H8 | 133.0° | 81.5° |
| C1' | O4' | C4' | C3' | 6.9° | 26.4° |
| C1' | O4' | C4' | C5' | 133.0° | 145.9° |
| C1' | O4' | C4' | H3 | 110.3° | 93.1° |
| O4' | C1' | C2' | H6 | 132.2° | 81.2° |
| O3' | C3' | C4' | H4 | 121.1° | 122.5° |
| O3' | C3' | C4' | O4' | 138.5° | 120.7° |
| O3' | C3' | C4' | C5' | 97.0° | 119.8° |
| O3' | C3' | C4' | H3 | 20.9° | 1.2° |
| O3' | C3' | C2' | H6 | 104.3° | 144.0° |
| C3' | C4' | O4' | C5' | 126.1° | 119.5° |
| C3' | C4' | O4' | H3 | 117.2° | 119.5° |
| C3' | C4' | C5' | H3 | 118.0° | 121.0° |
| C3' | C4' | C5' | O5' | 22.5° | 175.3° |
| C3' | C4' | C5' | H1 | 97.7° | 64.7° |
| C3' | C4' | C5' | H2 | 142.7° | 55.3° |
| C4' | C3' | O3' | H5 | 62.5° | 180.0° |
| C4' | C3' | C2' | H6 | 135.3° | 97.3° |
| O4' | C4' | C5' | H3 | 117.3° | 121.0° |
| O4' | C4' | C5' | O5' | 147.2° | 66.7° |
| O4' | C4' | C5' | H1 | 27.0° | 53.3° |
| O4' | C4' | C5' | H2 | 92.6° | 173.3° |
| O4' | C4' | C3' | H4 | 100.4° | 116.8° |
| C4' | O4' | C1' | H8 | 122.8° | 78.6° |
| C4' | C5' | O5' | H1 | 120.2° | 120.0° |
| C4' | C5' | O5' | H2 | 120.2° | 120.0° |
| C4' | C5' | O5' | PA | 162.9° | 180.0° |
| C4' | C5' | H1 | H2 | 119.3° | 120.0° |
| C5' | C4' | C3' | H4 | 24.0° | 2.6° |
| C5' | O5' | PA | O1A | 160.0° | 55.0° |
| C5' | O5' | PA | O2A | 40.5° | 65.0° |
| C5' | O5' | PA | C1 | 79.8° | 175.0° |
| O5' | C5' | H1 | H2 | 119.3° | 120.0° |
| O5' | C5' | C4' | H3 | 95.5° | 54.3° |
| O5' | PA | O1A | O2A | 119.4° | 120.0° |
| O5' | PA | O1A | C1 | 120.5° | 120.0° |
| O5' | PA | O2A | C1 | 120.6° | 120.0° |
| O5' | PA | C1 | PB | 68.5° | 180.0° |
| PA | O5' | C5' | H1 | 76.8° | 60.0° |
| PA | O5' | C5' | H2 | 42.7° | 60.0° |
| O5' | PA | O2A | H14 | 119.3° | 60.0° |
| O5' | PA | C1 | H17 | 170.2° | 60.0° |
| O5' | PA | C1 | H18 | 52.9° | 60.0° |
| O1A | PA | O2A | C1 | 120.2° | 120.0° |
| O1A | PA | C1 | PB | 51.4° | 60.0° |
| O1A | PA | O2A | H14 | 0.0° | 179.9° |
| O1A | PA | C1 | H17 | 70.0° | 60.0° |
| O1A | PA | C1 | H18 | 172.7° | 179.9° |
| O2A | PA | C1 | PB | 171.4° | 60.0° |
| O2A | PA | C1 | H17 | 50.1° | 180.0° |
| O2A | PA | C1 | H18 | 67.2° | 60.1° |
| PA | C1 | PB | O2B | 22.1° | 60.0° |
| PA | C1 | PB | H17 | 121.4° | 120.0° |
| PA | C1 | PB | H18 | 121.3° | 120.0° |
| PA | C1 | PB | O3B | 97.6° | 180.0° |
| PA | C1 | PB | O1B | 141.0° | 60.0° |
| C1 | PA | O2A | H14 | 120.2° | 60.0° |
| PA | C1 | H17 | H18 | 115.7° | 120.0° |
| O2B | PB | C1 | O3B | 119.6° | 120.0° |
| O2B | PB | C1 | O1B | 118.9° | 120.0° |
| O2B | PB | O3B | O1B | 119.8° | 120.1° |
| O2B | PB | O3B | PG | 151.3° | 60.0° |
| O2B | PB | O1B | H13 | 0.0° | 180.0° |
| O2B | PB | C1 | H17 | 143.4° | 180.0° |
| O2B | PB | C1 | H18 | 99.3° | 60.0° |
| C1 | PB | O3B | O1B | 121.0° | 120.0° |
| C1 | PB | O3B | PG | 89.6° | 180.0° |
| C1 | PB | O1B | H13 | 118.5° | 60.0° |
| PB | C1 | H17 | H18 | 115.7° | 120.0° |
| PB | O3B | PG | O1G | 128.6° | 45.0° |
| PB | O3B | PG | O2G | 111.7° | 75.0° |
| PB | O3B | PG | O3G | 8.8° | 165.0° |
| O3B | PB | O1B | H13 | 120.0° | 59.9° |
| O3B | PB | C1 | H17 | 23.8° | 60.0° |
| O3B | PB | C1 | H18 | 141.1° | 60.0° |
| O1B | PB | O3B | PG | 31.5° | 60.0° |
| O1B | PB | C1 | H17 | 97.6° | 60.0° |
| O1B | PB | C1 | H18 | 19.7° | 180.0° |
| O3B | PG | O1G | O2G | 120.6° | 120.0° |
| O3B | PG | O1G | O3G | 119.8° | 120.0° |
| O3B | PG | O2G | O3G | 120.7° | 120.0° |
| O3B | PG | O3G | H11 | 119.3° | 180.0° |
| O3B | PG | O2G | H12 | 119.5° | 60.0° |
| O1G | PG | O2G | O3G | 119.8° | 120.0° |
| O1G | PG | O3G | H11 | 0.0° | 60.0° |
| O1G | PG | O2G | H12 | 0.0° | 179.9° |
| O2G | PG | O3G | H11 | 119.4° | 60.0° |
| O3G | PG | O2G | H12 | 119.7° | 60.1° |
| H1 | C5' | C4' | H3 | 144.3° | 174.3° |
| H2 | C5' | C4' | H3 | 24.7° | 65.7° |
| H3 | C4' | C3' | H4 | 141.9° | 123.6° |
| H4 | C3' | O3' | H5 | 57.9° | 57.5° |
| H4 | C3' | C2' | H6 | 18.4° | 21.4° |
| H6 | C2' | O2' | H7 | 59.3° | 56.4° |
| H6 | C2' | C1' | H8 | 110.1° | 160.3° |
| H9 | C5 | C6 | H10 | 0.1° | 0.0° |
