2ST
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 0.00Å | 1.61Å | |
| OP3 | HOP3 | sing | 0.00Å | 0.95Å | |
| P | OP1 | doub | 0.00Å | 1.47Å | |
| P | OP2 | sing | 0.00Å | 1.49Å | |
| P | O5' | sing | 0.00Å | 1.59Å | |
| OP2 | HOP2 | sing | 0.00Å | 0.95Å | |
| O5' | C5' | sing | 0.00Å | 1.41Å | |
| N1 | C6 | sing | 0.00Å | 1.39Å | |
| N1 | C2 | sing | 0.00Å | 1.39Å | |
| N1 | C1' | sing | 0.00Å | 1.50Å | |
| C6 | C5 | doub | 0.00Å | 1.40Å | |
| C6 | H6 | sing | 0.00Å | 1.08Å | |
| C2 | O2 | doub | 0.00Å | 1.22Å | |
| C2 | N3 | sing | 0.00Å | 1.37Å | |
| N3 | C4 | sing | 0.00Å | 1.39Å | |
| N3 | HN3 | sing | 0.00Å | 1.00Å | |
| C4 | O4 | doub | 0.00Å | 1.22Å | |
| C4 | C5 | sing | 0.00Å | 1.50Å | |
| C5 | C5A | sing | 0.00Å | 1.50Å | |
| C5A | H5A1 | sing | 0.00Å | 1.10Å | |
| C5A | H5A2 | sing | 0.00Å | 1.10Å | |
| C5A | H5A3 | sing | 0.00Å | 1.10Å | |
| C2' | C1' | sing | 0.00Å | 1.50Å | |
| C2' | C3' | sing | 0.00Å | 1.52Å | |
| C2' | SE | sing | 0.00Å | 2.06Å | |
| C2' | H2' | sing | 0.00Å | 1.10Å | |
| C5' | C4' | sing | 0.00Å | 1.51Å | |
| C5' | H5' | sing | 0.00Å | 1.10Å | |
| C5' | H5'' | sing | 0.00Å | 1.10Å | |
| C4' | O4' | sing | 0.00Å | 1.44Å | |
| C4' | C3' | sing | 0.00Å | 1.51Å | |
| C4' | H4' | sing | 0.00Å | 1.10Å | |
| O4' | C1' | sing | 0.00Å | 1.44Å | |
| C1' | H1' | sing | 0.00Å | 1.10Å | |
| C3' | O3' | sing | 0.00Å | 1.37Å | |
| C3' | H3' | sing | 0.00Å | 1.10Å | |
| SE | CA' | sing | 0.00Å | 1.96Å | |
| CA' | HA'1 | sing | 0.00Å | 1.10Å | |
| CA' | HA'2 | sing | 0.00Å | 1.10Å | |
| CA' | HA'3 | sing | 0.00Å | 1.10Å | |
| O3' | HO3' | sing | 0.00Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 104.3° | 90.0° |
| OP3 | P | OP1 | 104.3° | 90.0° |
| OP3 | P | OP2 | 110.9° | 90.0° |
| OP3 | P | O5' | 104.8° | 90.0° |
| OP1 | P | OP2 | 121.1° | 90.0° |
| OP1 | P | O5' | 107.3° | 90.0° |
| OP2 | P | O5' | 107.3° | 90.0° |
| P | OP2 | HOP2 | 110.9° | 90.0° |
| P | O5' | C5' | 119.9° | 90.0° |
| O5' | C5' | C4' | 110.3° | 90.0° |
| O5' | C5' | H5' | 109.2° | 90.0° |
| O5' | C5' | H5'' | 109.0° | 90.0° |
| C6 | N1 | C2 | 121.0° | 90.0° |
| C6 | N1 | C1' | 124.2° | 90.0° |
| N1 | C6 | C5 | 122.7° | 90.0° |
| N1 | C6 | H6 | 118.6° | 90.0° |
| C2 | N1 | C1' | 114.8° | 90.0° |
| N1 | C2 | O2 | 121.9° | 90.0° |
| N1 | C2 | N3 | 116.7° | 90.0° |
| N1 | C1' | C2' | 107.2° | 90.0° |
| N1 | C1' | O4' | 103.0° | 90.0° |
| N1 | C1' | H1' | 114.3° | 90.0° |
| C5 | C6 | H6 | 118.6° | 90.0° |
| C6 | C5 | C4 | 117.3° | 90.0° |
| C6 | C5 | C5A | 123.8° | 90.0° |
| O2 | C2 | N3 | 121.4° | 90.0° |
| C2 | N3 | C4 | 127.6° | 90.0° |
| C2 | N3 | HN3 | 116.2° | 90.0° |
| C4 | N3 | HN3 | 116.2° | 90.0° |
| N3 | C4 | O4 | 120.0° | 90.0° |
| N3 | C4 | C5 | 114.7° | 90.0° |
| O4 | C4 | C5 | 125.3° | 90.0° |
| C4 | C5 | C5A | 118.9° | 90.0° |
| C5 | C5A | H5A1 | 109.5° | 90.0° |
| C5 | C5A | H5A2 | 109.4° | 90.0° |
| C5 | C5A | H5A3 | 109.4° | 90.0° |
| H5A1 | C5A | H5A2 | 109.5° | 90.0° |
| H5A1 | C5A | H5A3 | 109.5° | 90.0° |
| H5A2 | C5A | H5A3 | 109.5° | 90.0° |
| C1' | C2' | C3' | 101.1° | 90.0° |
| C1' | C2' | SE | 104.5° | 90.0° |
| C1' | C2' | H2' | 118.2° | 90.0° |
| C2' | C1' | O4' | 107.1° | 90.0° |
| C2' | C1' | H1' | 110.5° | 90.0° |
| C3' | C2' | SE | 111.3° | 90.0° |
| C3' | C2' | H2' | 112.2° | 90.0° |
| C2' | C3' | C4' | 101.8° | 90.0° |
| C2' | C3' | O3' | 108.9° | 90.0° |
| C2' | C3' | H3' | 116.2° | 90.0° |
| SE | C2' | H2' | 109.1° | 90.0° |
| C2' | SE | CA' | 99.6° | 90.0° |
| C4' | C5' | H5' | 109.2° | 90.0° |
| C4' | C5' | H5'' | 109.0° | 90.0° |
| C5' | C4' | O4' | 107.4° | 90.0° |
| C5' | C4' | C3' | 117.1° | 90.0° |
| C5' | C4' | H4' | 103.6° | 90.0° |
| H5' | C5' | H5'' | 110.1° | 90.0° |
| O4' | C4' | C3' | 101.5° | 90.0° |
| O4' | C4' | H4' | 118.7° | 90.0° |
| C4' | O4' | C1' | 108.7° | 90.0° |
| C3' | C4' | H4' | 109.2° | 90.0° |
| C4' | C3' | O3' | 113.7° | 90.0° |
| C4' | C3' | H3' | 111.6° | 90.0° |
| O4' | C1' | H1' | 114.2° | 90.0° |
| O3' | C3' | H3' | 104.9° | 90.0° |
| C3' | O3' | HO3' | 109.5° | 90.0° |
| SE | CA' | HA'1 | 109.5° | 90.0° |
| SE | CA' | HA'2 | 109.5° | 90.0° |
| SE | CA' | HA'3 | 109.4° | 90.0° |
| HA'1 | CA' | HA'2 | 109.5° | 90.0° |
| HA'1 | CA' | HA'3 | 109.4° | 90.0° |
| HA'2 | CA' | HA'3 | 109.5° | 90.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 125.7° | 90.0° |
| OP3 | P | OP1 | O5' | 110.9° | 90.0° |
| OP3 | P | OP2 | O5' | 114.0° | 90.0° |
| OP3 | P | OP2 | HOP2 | 180.0° | 90.0° |
| OP3 | P | O5' | C5' | 65.2° | 90.0° |
| HOP3 | OP3 | P | OP1 | 180.0° | 90.0° |
| HOP3 | OP3 | P | OP2 | 48.1° | 90.0° |
| HOP3 | OP3 | P | O5' | 67.3° | 90.0° |
| OP1 | P | OP2 | O5' | 123.4° | 90.0° |
| OP1 | P | OP2 | HOP2 | 57.4° | 90.0° |
| OP1 | P | O5' | C5' | 45.3° | 90.0° |
| OP2 | P | O5' | C5' | 176.8° | 90.0° |
| O5' | P | OP2 | HOP2 | 66.0° | 90.0° |
| P | O5' | C5' | C4' | 174.6° | 90.0° |
| P | O5' | C5' | H5' | 54.6° | 90.0° |
| P | O5' | C5' | H5'' | 65.7° | 90.0° |
| O5' | C5' | C4' | H5' | 120.0° | 90.0° |
| O5' | C5' | C4' | H5'' | 119.6° | 90.0° |
| O5' | C5' | H5' | H5'' | 119.6° | 90.0° |
| O5' | C5' | C4' | O4' | 66.0° | 90.0° |
| O5' | C5' | C4' | C3' | 47.3° | 90.0° |
| O5' | C5' | C4' | H4' | 167.6° | 90.0° |
| C6 | N1 | C2 | C1' | 179.3° | 90.0° |
| N1 | C6 | C5 | H6 | 180.0° | 90.0° |
| C6 | N1 | C2 | O2 | 176.0° | 90.0° |
| C6 | N1 | C2 | N3 | 2.6° | 90.0° |
| N1 | C6 | C5 | C4 | 0.7° | 90.0° |
| N1 | C6 | C5 | C5A | 179.7° | 90.0° |
| C6 | N1 | C1' | C2' | 92.7° | 90.0° |
| C6 | N1 | C1' | O4' | 20.1° | 90.0° |
| C6 | N1 | C1' | H1' | 144.6° | 90.0° |
| C2 | N1 | C6 | C5 | 1.4° | 90.0° |
| C2 | N1 | C6 | H6 | 178.6° | 90.0° |
| N1 | C2 | O2 | N3 | 178.5° | 90.0° |
| N1 | C2 | N3 | C4 | 1.7° | 90.0° |
| N1 | C2 | N3 | HN3 | 178.3° | 90.0° |
| C2 | N1 | C1' | C2' | 86.6° | 90.0° |
| C2 | N1 | C1' | O4' | 160.6° | 90.0° |
| C2 | N1 | C1' | H1' | 36.2° | 90.0° |
| C1' | N1 | C6 | C5 | 179.4° | 90.0° |
| C1' | N1 | C6 | H6 | 0.6° | 90.0° |
| C1' | N1 | C2 | O2 | 3.3° | 90.0° |
| C1' | N1 | C2 | N3 | 178.2° | 90.0° |
| N1 | C1' | C2' | O4' | 109.9° | 90.0° |
| N1 | C1' | C2' | H1' | 125.1° | 90.0° |
| N1 | C1' | C2' | C3' | 87.5° | 90.0° |
| N1 | C1' | C2' | SE | 156.8° | 90.0° |
| N1 | C1' | C2' | H2' | 35.3° | 90.0° |
| N1 | C1' | O4' | C4' | 117.6° | 90.0° |
| N1 | C1' | O4' | H1' | 124.5° | 90.0° |
| C6 | C5 | C4 | N3 | 1.5° | 90.0° |
| C6 | C5 | C4 | O4 | 177.9° | 90.0° |
| C6 | C5 | C4 | C5A | 179.6° | 90.0° |
| C6 | C5 | C5A | H5A1 | 60.1° | 90.0° |
| C6 | C5 | C5A | H5A2 | 179.8° | 90.0° |
| C6 | C5 | C5A | H5A3 | 59.9° | 90.0° |
| H6 | C6 | C5 | C4 | 179.3° | 90.0° |
| H6 | C6 | C5 | C5A | 0.3° | 90.0° |
| O2 | C2 | N3 | C4 | 176.9° | 90.0° |
| O2 | C2 | N3 | HN3 | 3.1° | 90.0° |
| C2 | N3 | C4 | HN3 | 180.0° | 90.0° |
| C2 | N3 | C4 | O4 | 179.1° | 90.0° |
| C2 | N3 | C4 | C5 | 0.4° | 90.0° |
| N3 | C4 | O4 | C5 | 179.5° | 90.0° |
| N3 | C4 | C5 | C5A | 178.9° | 90.0° |
| HN3 | N3 | C4 | O4 | 0.8° | 90.0° |
| HN3 | N3 | C4 | C5 | 179.6° | 90.0° |
| O4 | C4 | C5 | C5A | 1.6° | 90.0° |
| C4 | C5 | C5A | H5A1 | 120.3° | 90.0° |
| C4 | C5 | C5A | H5A2 | 0.3° | 90.0° |
| C4 | C5 | C5A | H5A3 | 119.7° | 90.0° |
| C5 | C5A | H5A1 | H5A2 | 120.0° | 90.0° |
| C5 | C5A | H5A1 | H5A3 | 120.0° | 90.0° |
| C5 | C5A | H5A2 | H5A3 | 119.9° | 90.0° |
| H5A1 | C5A | H5A2 | H5A3 | 120.0° | 90.0° |
| C1' | C2' | C3' | SE | 110.5° | 90.0° |
| C1' | C2' | C3' | H2' | 126.9° | 90.0° |
| C1' | C2' | SE | H2' | 127.3° | 90.0° |
| C2' | C1' | O4' | C4' | 4.8° | 90.0° |
| C1' | C2' | C3' | C4' | 40.0° | 90.0° |
| C2' | C1' | O4' | H1' | 122.7° | 90.0° |
| C1' | C2' | C3' | O3' | 160.4° | 90.0° |
| C1' | C2' | C3' | H3' | 81.5° | 90.0° |
| C1' | C2' | SE | CA' | 82.5° | 90.0° |
| C3' | C2' | SE | H2' | 124.3° | 90.0° |
| C2' | C3' | C4' | C5' | 159.9° | 90.0° |
| C2' | C3' | C4' | O4' | 43.4° | 90.0° |
| C2' | C3' | C4' | O3' | 116.9° | 90.0° |
| C2' | C3' | C4' | H3' | 124.7° | 90.0° |
| C2' | C3' | C4' | H4' | 82.8° | 90.0° |
| C3' | C2' | C1' | O4' | 22.4° | 90.0° |
| C3' | C2' | C1' | H1' | 147.4° | 90.0° |
| C2' | C3' | O3' | H3' | 125.1° | 90.0° |
| C3' | C2' | SE | CA' | 169.2° | 90.0° |
| C2' | C3' | O3' | HO3' | 15.1° | 90.0° |
| SE | C2' | C3' | C4' | 70.5° | 90.0° |
| SE | C2' | C1' | O4' | 93.3° | 90.0° |
| SE | C2' | C1' | H1' | 31.7° | 90.0° |
| SE | C2' | C3' | O3' | 49.9° | 90.0° |
| SE | C2' | C3' | H3' | 168.0° | 90.0° |
| C2' | SE | CA' | HA'1 | 54.3° | 90.0° |
| C2' | SE | CA' | HA'2 | 65.7° | 90.0° |
| C2' | SE | CA' | HA'3 | 174.2° | 90.0° |
| H2' | C2' | C3' | C4' | 166.9° | 90.0° |
| H2' | C2' | C1' | O4' | 145.2° | 90.0° |
| H2' | C2' | C1' | H1' | 89.8° | 90.0° |
| H2' | C2' | C3' | O3' | 72.7° | 90.0° |
| H2' | C2' | C3' | H3' | 45.4° | 90.0° |
| H2' | C2' | SE | CA' | 44.9° | 90.0° |
| C4' | C5' | H5' | H5'' | 119.7° | 90.0° |
| C5' | C4' | O4' | C3' | 123.4° | 90.0° |
| C5' | C4' | O4' | H4' | 116.9° | 90.0° |
| C5' | C4' | C3' | H4' | 117.3° | 90.0° |
| C5' | C4' | O4' | C1' | 153.5° | 90.0° |
| C5' | C4' | C3' | O3' | 83.2° | 90.0° |
| C5' | C4' | C3' | H3' | 35.2° | 90.0° |
| H5' | C5' | C4' | O4' | 54.0° | 90.0° |
| H5' | C5' | C4' | C3' | 167.3° | 90.0° |
| H5' | C5' | C4' | H4' | 72.4° | 90.0° |
| H5'' | C5' | C4' | O4' | 174.3° | 90.0° |
| H5'' | C5' | C4' | C3' | 72.4° | 90.0° |
| H5'' | C5' | C4' | H4' | 47.9° | 90.0° |
| O4' | C4' | C3' | H4' | 126.2° | 90.0° |
| C4' | O4' | C1' | H1' | 118.0° | 90.0° |
| O4' | C4' | C3' | O3' | 160.3° | 90.0° |
| O4' | C4' | C3' | H3' | 81.3° | 90.0° |
| C3' | C4' | O4' | C1' | 30.0° | 90.0° |
| C4' | C3' | O3' | H3' | 122.2° | 90.0° |
| C4' | C3' | O3' | HO3' | 97.6° | 90.0° |
| H4' | C4' | O4' | C1' | 89.6° | 90.0° |
| H4' | C4' | C3' | O3' | 34.1° | 90.0° |
| H4' | C4' | C3' | H3' | 152.5° | 90.0° |
| H3' | C3' | O3' | HO3' | 140.1° | 90.0° |
| SE | CA' | HA'1 | HA'2 | 120.0° | 90.0° |
| SE | CA' | HA'1 | HA'3 | 120.0° | 90.0° |
| SE | CA' | HA'2 | HA'3 | 120.0° | 90.0° |
| HA'1 | CA' | HA'2 | HA'3 | 120.0° | 90.0° |
