2OT
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.50Å | 1.49Å | |
| P | OP2 | sing | 1.62Å | 1.45Å | |
| P | O5' | sing | 1.62Å | 1.59Å | |
| P | OP3 | sing | 1.62Å | 10.46Å | |
| OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.43Å | |
| C5' | C4' | sing | 1.52Å | 1.50Å | |
| C5' | H5' | sing | 1.09Å | 1.12Å | |
| C5' | H5'' | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.52Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C1' | N1 | sing | 1.43Å | 1.49Å | |
| C1' | C2' | sing | 1.52Å | 1.53Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| N1 | C6 | sing | 1.39Å | 1.38Å | |
| N1 | C2 | sing | 1.41Å | 1.38Å | |
| C6 | C5 | doub | 1.34Å | 1.34Å | |
| C6 | H6 | sing | 1.09Å | 1.10Å | |
| C2 | O2 | doub | 1.23Å | 1.21Å | |
| C2 | N3 | sing | 1.40Å | 1.37Å | |
| N3 | C4 | sing | 1.39Å | 1.37Å | |
| N3 | HN3 | sing | 1.02Å | 1.02Å | |
| C4 | O4 | doub | 1.23Å | 1.23Å | |
| C4 | C5 | sing | 1.49Å | 1.44Å | |
| C5 | C5M | sing | 1.50Å | 1.49Å | |
| C5M | H71 | sing | 1.09Å | 1.11Å | |
| C5M | H72 | sing | 1.09Å | 1.11Å | |
| C5M | H73 | sing | 1.09Å | 1.12Å | |
| C2' | O2' | sing | 1.41Å | 1.45Å | |
| C2' | C3' | sing | 1.51Å | 1.53Å | |
| C2' | H2' | sing | 1.10Å | 1.11Å | |
| O2' | CB' | sing | 1.42Å | 1.44Å | |
| CB' | CC' | sing | 1.52Å | 1.53Å | |
| CB' | HB'1 | sing | 1.09Å | 1.11Å | |
| CB' | HB'2 | sing | 1.09Å | 1.12Å | |
| CC' | OD' | sing | 1.42Å | 1.43Å | |
| CC' | HC'1 | sing | 1.09Å | 1.11Å | |
| CC' | HC'2 | sing | 1.09Å | 1.12Å | |
| OD' | NE' | sing | 1.46Å | 1.35Å | |
| NE' | CF' | sing | 1.46Å | 1.46Å | |
| NE' | CG' | sing | 1.46Å | 1.46Å | |
| CF' | HF'1 | sing | 1.09Å | 1.12Å | |
| CF' | HF'2 | sing | 1.09Å | 1.12Å | |
| CF' | HF'3 | sing | 1.09Å | 1.11Å | |
| CG' | HG'1 | sing | 1.09Å | 1.12Å | |
| CG' | HG'2 | sing | 1.09Å | 1.12Å | |
| CG' | HG'3 | sing | 1.09Å | 1.11Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.98Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.5° | 115.3° |
| OP1 | P | O5' | 109.4° | 115.0° |
| OP1 | P | OP3 | 116.2° | 114.9° |
| OP2 | P | O5' | 108.1° | 103.8° |
| OP2 | P | OP3 | 80.5° | 103.3° |
| P | OP2 | HOP2 | 119.5° | 119.0° |
| O5' | P | OP3 | 29.7° | 102.9° |
| P | O5' | C5' | 120.8° | 118.5° |
| P | OP3 | HOP3 | 116.2° | 119.0° |
| O5' | C5' | C4' | 109.9° | 108.6° |
| O5' | C5' | H5' | 112.0° | 109.2° |
| O5' | C5' | H5'' | 112.1° | 109.3° |
| C4' | C5' | H5' | 112.1° | 110.1° |
| C4' | C5' | H5'' | 112.0° | 110.1° |
| C5' | C4' | O4' | 109.3° | 108.2° |
| C5' | C4' | C3' | 115.1° | 113.3° |
| C5' | C4' | H4' | 104.0° | 109.3° |
| H5' | C5' | H5'' | 98.4° | 109.6° |
| O4' | C4' | C3' | 103.1° | 105.9° |
| O4' | C4' | H4' | 115.8° | 107.7° |
| C4' | O4' | C1' | 109.5° | 109.2° |
| C3' | C4' | H4' | 110.1° | 112.2° |
| C4' | C3' | C2' | 102.2° | 102.1° |
| C4' | C3' | O3' | 113.5° | 107.9° |
| C4' | C3' | H3' | 113.8° | 114.5° |
| O4' | C1' | N1 | 108.6° | 109.0° |
| O4' | C1' | C2' | 107.1° | 106.5° |
| O4' | C1' | H1' | 112.6° | 108.9° |
| N1 | C1' | C2' | 112.4° | 112.5° |
| N1 | C1' | H1' | 107.4° | 107.3° |
| C1' | N1 | C6 | 121.7° | 118.5° |
| C1' | N1 | C2 | 117.4° | 121.3° |
| C2' | C1' | H1' | 108.8° | 112.6° |
| C1' | C2' | O2' | 105.2° | 112.6° |
| C1' | C2' | C3' | 100.6° | 102.0° |
| C1' | C2' | H2' | 118.0° | 111.1° |
| C6 | N1 | C2 | 120.9° | 120.2° |
| N1 | C6 | C5 | 123.1° | 124.5° |
| N1 | C6 | H6 | 119.8° | 114.7° |
| N1 | C2 | O2 | 122.7° | 123.8° |
| N1 | C2 | N3 | 115.0° | 115.1° |
| C5 | C6 | H6 | 117.0° | 120.7° |
| C6 | C5 | C4 | 118.3° | 118.4° |
| C6 | C5 | C5M | 123.4° | 123.6° |
| O2 | C2 | N3 | 122.2° | 121.1° |
| C2 | N3 | C4 | 127.2° | 127.0° |
| C2 | N3 | HN3 | 116.4° | 116.4° |
| C4 | N3 | HN3 | 116.5° | 116.6° |
| N3 | C4 | O4 | 119.9° | 123.6° |
| N3 | C4 | C5 | 115.4° | 114.8° |
| O4 | C4 | C5 | 124.7° | 121.6° |
| C4 | C5 | C5M | 118.2° | 118.0° |
| C5 | C5M | H71 | 107.3° | 109.7° |
| C5 | C5M | H72 | 123.4° | 109.8° |
| C5 | C5M | H73 | 107.3° | 109.7° |
| H71 | C5M | H72 | 107.3° | 109.4° |
| H71 | C5M | H73 | 102.4° | 109.4° |
| H72 | C5M | H73 | 107.2° | 108.9° |
| O2' | C2' | C3' | 111.3° | 112.3° |
| O2' | C2' | H2' | 108.6° | 108.6° |
| C2' | O2' | CB' | 115.8° | 111.9° |
| C3' | C2' | H2' | 112.7° | 110.1° |
| C2' | C3' | O3' | 115.1° | 110.3° |
| C2' | C3' | H3' | 112.1° | 114.0° |
| O2' | CB' | CC' | 109.2° | 109.0° |
| O2' | CB' | HB'1 | 112.3° | 108.1° |
| O2' | CB' | HB'2 | 112.3° | 108.2° |
| CC' | CB' | HB'1 | 112.3° | 111.2° |
| CC' | CB' | HB'2 | 112.3° | 110.5° |
| CB' | CC' | OD' | 109.0° | 109.0° |
| CB' | CC' | HC'1 | 112.4° | 111.1° |
| CB' | CC' | HC'2 | 112.4° | 110.5° |
| HB'1 | CB' | HB'2 | 98.1° | 109.7° |
| OD' | CC' | HC'1 | 112.4° | 108.2° |
| OD' | CC' | HC'2 | 112.4° | 108.3° |
| CC' | OD' | NE' | 118.3° | 107.8° |
| HC'1 | CC' | HC'2 | 98.0° | 109.7° |
| OD' | NE' | CF' | 111.7° | 104.7° |
| OD' | NE' | CG' | 109.3° | 104.6° |
| CF' | NE' | CG' | 110.9° | 111.0° |
| NE' | CF' | HF'1 | 111.4° | 110.1° |
| NE' | CF' | HF'2 | 111.7° | 110.3° |
| NE' | CF' | HF'3 | 111.4° | 110.2° |
| NE' | CG' | HG'1 | 112.2° | 110.1° |
| NE' | CG' | HG'2 | 109.3° | 110.3° |
| NE' | CG' | HG'3 | 112.3° | 110.2° |
| HF'1 | CF' | HF'2 | 111.4° | 108.8° |
| HF'1 | CF' | HF'3 | 98.9° | 108.7° |
| HF'2 | CF' | HF'3 | 111.4° | 108.7° |
| HG'1 | CG' | HG'2 | 112.3° | 108.8° |
| HG'1 | CG' | HG'3 | 98.2° | 108.8° |
| HG'2 | CG' | HG'3 | 112.3° | 108.7° |
| O3' | C3' | H3' | 100.6° | 107.8° |
| C3' | O3' | HO3' | 113.5° | 106.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 125.9° | 126.6° |
| OP1 | P | OP2 | OP3 | 114.8° | 126.2° |
| OP1 | P | O5' | OP3 | 109.0° | 125.8° |
| OP1 | P | OP2 | HOP2 | 180.0° | 48.7° |
| OP1 | P | O5' | C5' | 45.4° | 179.9° |
| OP1 | P | OP3 | HOP3 | 180.0° | 48.0° |
| OP2 | P | O5' | OP3 | 22.6° | 107.4° |
| OP2 | P | O5' | C5' | 177.0° | 53.2° |
| OP2 | P | OP3 | HOP3 | 61.7° | 78.5° |
| O5' | P | OP2 | HOP2 | 54.1° | 175.4° |
| P | O5' | C5' | C4' | 175.0° | 180.0° |
| P | O5' | C5' | H5' | 49.7° | 59.9° |
| P | O5' | C5' | H5'' | 59.8° | 59.9° |
| O5' | P | OP3 | HOP3 | 96.5° | 173.8° |
| OP3 | P | OP2 | HOP2 | 65.3° | 77.5° |
| OP3 | P | O5' | C5' | 154.4° | 54.2° |
| O5' | C5' | C4' | H5' | 125.2° | 119.5° |
| O5' | C5' | C4' | H5'' | 125.3° | 119.6° |
| O5' | C5' | H5' | H5'' | 118.0° | 119.6° |
| O5' | C5' | C4' | O4' | 65.4° | 62.4° |
| O5' | C5' | C4' | C3' | 49.9° | 179.5° |
| O5' | C5' | C4' | H4' | 170.4° | 54.6° |
| C4' | C5' | H5' | H5'' | 118.0° | 121.2° |
| C5' | C4' | O4' | C3' | 122.8° | 121.7° |
| C5' | C4' | O4' | H4' | 116.9° | 118.1° |
| C5' | C4' | C3' | H4' | 117.1° | 124.4° |
| C5' | C4' | O4' | C1' | 147.0° | 109.0° |
| C5' | C4' | C3' | C2' | 158.5° | 86.9° |
| C5' | C4' | C3' | O3' | 76.8° | 156.8° |
| C5' | C4' | C3' | H3' | 37.4° | 36.8° |
| H5' | C5' | C4' | O4' | 59.8° | 57.1° |
| H5' | C5' | C4' | C3' | 175.2° | 60.0° |
| H5' | C5' | C4' | H4' | 64.4° | 174.1° |
| H5'' | C5' | C4' | O4' | 169.3° | 178.0° |
| H5'' | C5' | C4' | C3' | 75.3° | 60.9° |
| H5'' | C5' | C4' | H4' | 45.1° | 65.0° |
| O4' | C4' | C3' | H4' | 124.0° | 117.2° |
| C4' | O4' | C1' | N1 | 120.5° | 132.9° |
| C4' | O4' | C1' | C2' | 1.1° | 11.3° |
| C4' | O4' | C1' | H1' | 120.8° | 110.3° |
| O4' | C4' | C3' | C2' | 39.7° | 31.5° |
| O4' | C4' | C3' | O3' | 164.3° | 84.7° |
| O4' | C4' | C3' | H3' | 81.5° | 155.2° |
| C3' | C4' | O4' | C1' | 24.2° | 12.8° |
| C4' | C3' | C2' | C1' | 39.3° | 37.1° |
| C4' | C3' | C2' | O2' | 71.8° | 158.0° |
| C4' | C3' | C2' | O3' | 123.6° | 114.5° |
| C4' | C3' | C2' | H3' | 122.3° | 124.0° |
| C4' | C3' | C2' | H2' | 166.0° | 80.9° |
| C4' | C3' | O3' | H3' | 121.9° | 124.2° |
| C4' | C3' | O3' | HO3' | 180.0° | 15.2° |
| H4' | C4' | O4' | C1' | 96.0° | 133.0° |
| H4' | C4' | C3' | C2' | 84.4° | 148.7° |
| H4' | C4' | C3' | O3' | 40.3° | 32.5° |
| H4' | C4' | C3' | H3' | 154.5° | 87.6° |
| O4' | C1' | N1 | C2' | 118.3° | 117.9° |
| O4' | C1' | N1 | H1' | 122.0° | 117.7° |
| O4' | C1' | C2' | H1' | 122.0° | 119.3° |
| O4' | C1' | N1 | C6 | 26.4° | 32.3° |
| O4' | C1' | N1 | C2 | 153.9° | 147.8° |
| O4' | C1' | C2' | O2' | 90.2° | 151.3° |
| O4' | C1' | C2' | C3' | 25.5° | 30.7° |
| O4' | C1' | C2' | H2' | 148.5° | 86.6° |
| N1 | C1' | C2' | H1' | 118.8° | 121.4° |
| C1' | N1 | C6 | C2 | 179.6° | 179.9° |
| C1' | N1 | C6 | C5 | 179.4° | 180.0° |
| C1' | N1 | C6 | H6 | 0.7° | 0.0° |
| C1' | N1 | C2 | O2 | 2.3° | 0.1° |
| C1' | N1 | C2 | N3 | 178.8° | 180.0° |
| N1 | C1' | C2' | O2' | 150.7° | 89.4° |
| N1 | C1' | C2' | C3' | 93.7° | 150.0° |
| N1 | C1' | C2' | H2' | 29.4° | 32.7° |
| C2' | C1' | N1 | C6 | 91.9° | 85.6° |
| C2' | C1' | N1 | C2 | 87.7° | 94.3° |
| C1' | C2' | O2' | C3' | 108.1° | 114.5° |
| C1' | C2' | O2' | H2' | 127.3° | 123.5° |
| C1' | C2' | C3' | H2' | 126.7° | 118.0° |
| C1' | C2' | O2' | CB' | 73.8° | 174.5° |
| C1' | C2' | C3' | O3' | 162.9° | 77.4° |
| C1' | C2' | C3' | H3' | 83.0° | 161.1° |
| H1' | C1' | N1 | C6 | 148.4° | 150.0° |
| H1' | C1' | N1 | C2 | 31.9° | 30.1° |
| H1' | C1' | C2' | O2' | 31.9° | 32.1° |
| H1' | C1' | C2' | C3' | 147.5° | 88.5° |
| H1' | C1' | C2' | H2' | 89.5° | 154.2° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | N1 | C2 | O2 | 177.4° | 180.0° |
| C6 | N1 | C2 | N3 | 1.5° | 0.0° |
| N1 | C6 | C5 | C4 | 1.9° | 0.0° |
| N1 | C6 | C5 | C5M | 177.6° | 180.0° |
| C2 | N1 | C6 | C5 | 0.3° | 0.0° |
| C2 | N1 | C6 | H6 | 179.7° | 180.0° |
| N1 | C2 | O2 | N3 | 178.8° | 179.9° |
| N1 | C2 | N3 | C4 | 1.7° | 0.0° |
| N1 | C2 | N3 | HN3 | 178.3° | 179.9° |
| C6 | C5 | C4 | N3 | 1.7° | 0.0° |
| C6 | C5 | C4 | O4 | 178.5° | 180.0° |
| C6 | C5 | C4 | C5M | 179.6° | 180.0° |
| C6 | C5 | C5M | H71 | 54.7° | 64.2° |
| C6 | C5 | C5M | H72 | 180.0° | 56.0° |
| C6 | C5 | C5M | H73 | 54.7° | 175.6° |
| H6 | C6 | C5 | C4 | 178.1° | 180.0° |
| H6 | C6 | C5 | C5M | 2.4° | 0.0° |
| O2 | C2 | N3 | C4 | 177.1° | 179.9° |
| O2 | C2 | N3 | HN3 | 2.9° | 0.0° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 179.7° | 179.9° |
| C2 | N3 | C4 | C5 | 0.2° | 0.1° |
| N3 | C4 | O4 | C5 | 179.8° | 180.0° |
| N3 | C4 | C5 | C5M | 177.9° | 180.0° |
| HN3 | N3 | C4 | O4 | 0.3° | 0.0° |
| HN3 | N3 | C4 | C5 | 179.9° | 180.0° |
| O4 | C4 | C5 | C5M | 1.9° | 0.0° |
| C4 | C5 | C5M | H71 | 124.8° | 115.8° |
| C4 | C5 | C5M | H72 | 0.4° | 124.0° |
| C4 | C5 | C5M | H73 | 125.7° | 4.4° |
| C5 | C5M | H71 | H72 | 134.5° | 120.5° |
| C5 | C5M | H71 | H73 | 112.8° | 120.4° |
| C5 | C5M | H72 | H73 | 125.3° | 120.1° |
| H71 | C5M | H72 | H73 | 109.4° | 119.5° |
| O2' | C2' | C3' | H2' | 122.3° | 121.1° |
| C2' | O2' | CB' | CC' | 130.4° | 179.0° |
| C2' | O2' | CB' | HB'1 | 104.3° | 60.0° |
| C2' | O2' | CB' | HB'2 | 5.1° | 58.8° |
| O2' | C2' | C3' | O3' | 51.8° | 43.5° |
| O2' | C2' | C3' | H3' | 166.0° | 78.0° |
| C3' | C2' | O2' | CB' | 178.0° | 60.0° |
| C2' | C3' | O3' | H3' | 120.7° | 125.1° |
| C2' | C3' | O3' | HO3' | 62.6° | 95.6° |
| H2' | C2' | O2' | CB' | 53.4° | 62.0° |
| H2' | C2' | C3' | O3' | 70.5° | 164.6° |
| H2' | C2' | C3' | H3' | 43.7° | 43.1° |
| O2' | CB' | CC' | HB'1 | 125.3° | 119.1° |
| O2' | CB' | CC' | HB'2 | 125.3° | 118.8° |
| O2' | CB' | HB'1 | HB'2 | 118.2° | 117.8° |
| O2' | CB' | CC' | OD' | 83.8° | 60.8° |
| O2' | CB' | CC' | HC'1 | 41.5° | 180.0° |
| O2' | CB' | CC' | HC'2 | 150.9° | 58.0° |
| CC' | CB' | HB'1 | HB'2 | 118.3° | 122.5° |
| CB' | CC' | OD' | HC'1 | 125.3° | 121.0° |
| CB' | CC' | OD' | HC'2 | 125.3° | 120.2° |
| CB' | CC' | HC'1 | HC'2 | 118.3° | 122.4° |
| CB' | CC' | OD' | NE' | 168.2° | 180.0° |
| HB'1 | CB' | CC' | OD' | 150.9° | 180.0° |
| HB'1 | CB' | CC' | HC'1 | 83.8° | 60.8° |
| HB'1 | CB' | CC' | HC'2 | 25.7° | 61.1° |
| HB'2 | CB' | CC' | OD' | 41.5° | 58.0° |
| HB'2 | CB' | CC' | HC'1 | 166.7° | 61.2° |
| HB'2 | CB' | CC' | HC'2 | 83.8° | 176.9° |
| OD' | CC' | HC'1 | HC'2 | 118.3° | 117.9° |
| CC' | OD' | NE' | CF' | 148.8° | 60.0° |
| CC' | OD' | NE' | CG' | 88.1° | 176.7° |
| HC'1 | CC' | OD' | NE' | 42.9° | 59.0° |
| HC'2 | CC' | OD' | NE' | 66.5° | 59.8° |
| OD' | NE' | CF' | CG' | 122.2° | 112.3° |
| OD' | NE' | CF' | HF'1 | 54.7° | 87.3° |
| OD' | NE' | CF' | HF'2 | 180.0° | 152.6° |
| OD' | NE' | CF' | HF'3 | 54.7° | 32.6° |
| OD' | NE' | CG' | HG'1 | 54.8° | 113.7° |
| OD' | NE' | CG' | HG'2 | 180.0° | 6.3° |
| OD' | NE' | CG' | HG'3 | 54.7° | 126.3° |
| NE' | CF' | HF'1 | HF'2 | 125.4° | 121.0° |
| NE' | CF' | HF'1 | HF'3 | 117.3° | 120.8° |
| NE' | CF' | HF'2 | HF'3 | 125.3° | 120.9° |
| CF' | NE' | CG' | HG'1 | 68.8° | 133.9° |
| CF' | NE' | CG' | HG'2 | 56.4° | 106.0° |
| CF' | NE' | CG' | HG'3 | 178.3° | 14.0° |
| CG' | NE' | CF' | HF'1 | 176.9° | 160.4° |
| CG' | NE' | CF' | HF'2 | 57.8° | 40.3° |
| CG' | NE' | CF' | HF'3 | 67.5° | 79.7° |
| NE' | CG' | HG'1 | HG'2 | 123.6° | 121.0° |
| NE' | CG' | HG'1 | HG'3 | 118.2° | 120.8° |
| NE' | CG' | HG'2 | HG'3 | 125.3° | 120.9° |
| HF'1 | CF' | HF'2 | HF'3 | 109.4° | 118.2° |
| HG'1 | CG' | HG'2 | HG'3 | 109.5° | 118.3° |
| H3' | C3' | O3' | HO3' | 58.1° | 139.4° |
