2OM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O5' | sing | 1.61Å | 1.61Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.48Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.47Å | |
| O3' | C3' | sing | 1.43Å | 1.44Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.47Å | 1.50Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.34Å | 1.39Å | |
| N1 | C6 | sing | 1.46Å | 1.50Å | |
| O2 | C2 | doub | 1.21Å | 1.22Å | |
| C2 | N3 | sing | 1.34Å | 1.35Å | |
| N3 | C4 | sing | 1.35Å | 1.35Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C5 | C4 | sing | 1.51Å | 1.51Å | |
| C4 | O4 | doub | 1.21Å | 1.21Å | |
| C6 | C5 | sing | 1.53Å | 1.55Å | |
| C5 | H5 | sing | 1.09Å | 1.10Å | |
| C5 | H5A | sing | 1.09Å | 1.10Å | |
| C6 | C7 | sing | 1.51Å | 1.50Å | |
| C6 | H6 | sing | 1.09Å | 1.10Å | |
| OP1 | P | doub | 1.48Å | 1.49Å | |
| OP3 | P | sing | 1.61Å | 1.61Å | |
| P | OP2 | sing | 1.61Å | 1.62Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| O71 | C7 | doub | 1.21Å | 1.21Å | |
| C7 | O72 | sing | 1.34Å | 1.34Å | |
| O72 | HO72 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | O5' | C5' | 106.6° | 123.0° |
| O5' | P | OP1 | 110.1° | 109.5° |
| O5' | P | OP3 | 109.7° | 109.4° |
| O5' | P | OP2 | 109.5° | 109.5° |
| O5' | C5' | C4' | 110.5° | 109.5° |
| O5' | C5' | H5' | 109.1° | 109.5° |
| O5' | C5' | H5'A | 108.9° | 109.5° |
| C4' | C5' | H5' | 109.1° | 109.5° |
| C4' | C5' | H5'A | 108.9° | 109.5° |
| C5' | C4' | C3' | 110.9° | 109.9° |
| C5' | C4' | O4' | 110.8° | 109.9° |
| C5' | C4' | H4' | 106.7° | 109.9° |
| H5' | C5' | H5'A | 110.3° | 109.5° |
| C3' | C4' | O4' | 106.6° | 107.3° |
| C3' | C4' | H4' | 110.8° | 110.0° |
| C4' | C3' | O3' | 110.1° | 110.5° |
| C4' | C3' | C2' | 102.9° | 104.2° |
| C4' | C3' | H3' | 114.6° | 110.4° |
| O4' | C4' | H4' | 111.0° | 109.9° |
| C4' | O4' | C1' | 108.2° | 107.0° |
| O4' | C1' | C2' | 104.7° | 103.5° |
| O4' | C1' | N1 | 111.3° | 110.6° |
| O4' | C1' | H1' | 112.3° | 110.6° |
| O3' | C3' | C2' | 113.1° | 110.5° |
| O3' | C3' | H3' | 104.7° | 110.6° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C2' | C3' | H3' | 111.7° | 110.5° |
| C3' | C2' | O2' | 111.2° | 110.9° |
| C3' | C2' | C1' | 102.1° | 102.1° |
| C3' | C2' | H2' | 114.8° | 110.9° |
| O2' | C2' | C1' | 114.0° | 110.9° |
| O2' | C2' | H2' | 103.1° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C1' | C2' | H2' | 112.1° | 110.9° |
| C2' | C1' | N1 | 112.1° | 110.6° |
| C2' | C1' | H1' | 111.5° | 110.6° |
| N1 | C1' | H1' | 105.0° | 110.7° |
| C1' | N1 | C2 | 121.5° | 119.6° |
| C1' | N1 | C6 | 117.3° | 119.5° |
| C2 | N1 | C6 | 121.2° | 120.9° |
| N1 | C2 | O2 | 120.5° | 119.2° |
| N1 | C2 | N3 | 121.6° | 121.6° |
| N1 | C6 | C5 | 114.0° | 109.7° |
| N1 | C6 | C7 | 111.6° | 109.5° |
| N1 | C6 | H6 | 104.5° | 109.5° |
| O2 | C2 | N3 | 117.8° | 119.2° |
| C2 | N3 | C4 | 122.3° | 121.0° |
| C2 | N3 | HN3 | 118.9° | 119.5° |
| C4 | N3 | HN3 | 118.8° | 119.6° |
| N3 | C4 | C5 | 120.9° | 120.0° |
| N3 | C4 | O4 | 119.7° | 120.0° |
| C5 | C4 | O4 | 119.4° | 120.0° |
| C4 | C5 | C6 | 111.9° | 109.3° |
| C4 | C5 | H5 | 108.7° | 109.5° |
| C4 | C5 | H5A | 108.1° | 109.5° |
| C6 | C5 | H5 | 108.7° | 109.6° |
| C6 | C5 | H5A | 108.1° | 109.4° |
| C5 | C6 | C7 | 108.5° | 109.3° |
| C5 | C6 | H6 | 107.8° | 109.5° |
| H5 | C5 | H5A | 111.4° | 109.5° |
| C7 | C6 | H6 | 110.4° | 109.4° |
| C6 | C7 | O71 | 121.0° | 120.0° |
| C6 | C7 | O72 | 119.6° | 120.0° |
| OP1 | P | OP3 | 109.1° | 109.5° |
| OP1 | P | OP2 | 109.5° | 109.5° |
| OP3 | P | OP2 | 109.0° | 109.5° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| O71 | C7 | O72 | 119.4° | 120.0° |
| C7 | O72 | HO72 | 109.5° | 117.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| P | O5' | C5' | C4' | 158.4° | 180.0° |
| P | O5' | C5' | H5' | 81.6° | 59.9° |
| P | O5' | C5' | H5'A | 38.8° | 60.0° |
| O5' | P | OP1 | OP3 | 120.4° | 120.0° |
| O5' | P | OP1 | OP2 | 120.4° | 120.1° |
| O5' | P | OP3 | OP2 | 119.9° | 120.0° |
| O5' | P | OP2 | HOP2 | 40.1° | 60.0° |
| O5' | P | OP3 | HOP3 | 59.6° | 180.0° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'A | 119.6° | 120.0° |
| O5' | C5' | H5' | H5'A | 119.6° | 120.0° |
| O5' | C5' | C4' | C3' | 160.0° | 175.7° |
| O5' | C5' | C4' | O4' | 81.8° | 66.5° |
| O5' | C5' | C4' | H4' | 39.1° | 54.6° |
| C5' | O5' | P | OP1 | 61.2° | 55.0° |
| C5' | O5' | P | OP3 | 178.8° | 175.0° |
| C5' | O5' | P | OP2 | 59.2° | 65.0° |
| C4' | C5' | H5' | H5'A | 119.6° | 120.0° |
| C5' | C4' | C3' | O4' | 120.7° | 119.4° |
| C5' | C4' | C3' | H4' | 118.4° | 121.1° |
| C5' | C4' | O4' | H4' | 118.4° | 121.0° |
| C5' | C4' | O4' | C1' | 119.7° | 145.9° |
| C5' | C4' | C3' | O3' | 143.0° | 119.9° |
| C5' | C4' | C3' | C2' | 96.2° | 121.4° |
| C5' | C4' | C3' | H3' | 25.3° | 2.8° |
| H5' | C5' | C4' | C3' | 80.0° | 64.3° |
| H5' | C5' | C4' | O4' | 38.2° | 53.5° |
| H5' | C5' | C4' | H4' | 159.1° | 174.6° |
| H5'A | C5' | C4' | C3' | 40.4° | 55.7° |
| H5'A | C5' | C4' | O4' | 158.6° | 173.5° |
| H5'A | C5' | C4' | H4' | 80.5° | 65.4° |
| C3' | C4' | O4' | H4' | 120.8° | 119.6° |
| C3' | C4' | O4' | C1' | 1.1° | 26.5° |
| C4' | C3' | O3' | C2' | 114.5° | 114.8° |
| C4' | C3' | O3' | H3' | 123.7° | 122.6° |
| C4' | C3' | C2' | H3' | 123.4° | 118.6° |
| C4' | C3' | O3' | HO3' | 82.7° | 180.0° |
| C4' | C3' | C2' | O2' | 159.3° | 139.1° |
| C4' | C3' | C2' | C1' | 37.3° | 20.9° |
| C4' | C3' | C2' | H2' | 84.1° | 97.3° |
| O4' | C4' | C3' | O3' | 96.4° | 120.7° |
| O4' | C4' | C3' | C2' | 24.5° | 2.0° |
| O4' | C4' | C3' | H3' | 146.0° | 116.6° |
| C4' | O4' | C1' | C2' | 22.7° | 40.1° |
| C4' | O4' | C1' | N1 | 144.1° | 158.6° |
| C4' | O4' | C1' | H1' | 98.5° | 78.4° |
| H4' | C4' | O4' | C1' | 121.9° | 93.0° |
| H4' | C4' | C3' | O3' | 24.6° | 1.2° |
| H4' | C4' | C3' | C2' | 145.4° | 117.5° |
| H4' | C4' | C3' | H3' | 93.1° | 123.9° |
| O4' | C1' | C2' | C3' | 37.5° | 37.1° |
| O4' | C1' | C2' | O2' | 157.6° | 155.2° |
| O4' | C1' | C2' | N1 | 120.8° | 118.5° |
| O4' | C1' | C2' | H1' | 121.7° | 118.6° |
| O4' | C1' | C2' | H2' | 85.8° | 81.1° |
| O4' | C1' | N1 | H1' | 121.8° | 123.0° |
| O4' | C1' | N1 | C2 | 43.5° | 53.5° |
| O4' | C1' | N1 | C6 | 135.9° | 126.7° |
| O3' | C3' | C2' | H3' | 117.8° | 122.7° |
| O3' | C3' | C2' | O2' | 40.6° | 20.4° |
| O3' | C3' | C2' | C1' | 81.4° | 97.8° |
| O3' | C3' | C2' | H2' | 157.1° | 144.0° |
| C2' | C3' | O3' | HO3' | 162.8° | 65.2° |
| C3' | C2' | O2' | C1' | 114.7° | 112.7° |
| C3' | C2' | O2' | H2' | 123.5° | 123.7° |
| C3' | C2' | C1' | H2' | 123.4° | 118.2° |
| C3' | C2' | O2' | HO2' | 21.9° | 61.5° |
| C3' | C2' | C1' | N1 | 158.4° | 155.5° |
| C3' | C2' | C1' | H1' | 84.2° | 81.5° |
| H3' | C3' | O3' | HO3' | 40.9° | 57.4° |
| H3' | C3' | C2' | O2' | 77.2° | 102.3° |
| H3' | C3' | C2' | C1' | 160.8° | 139.5° |
| H3' | C3' | C2' | H2' | 39.3° | 21.3° |
| O2' | C2' | C1' | H2' | 116.6° | 123.6° |
| O2' | C2' | C1' | N1 | 81.6° | 86.3° |
| O2' | C2' | C1' | H1' | 35.8° | 36.7° |
| C1' | C2' | O2' | HO2' | 136.7° | 174.2° |
| C2' | C1' | N1 | H1' | 121.3° | 123.0° |
| C2' | C1' | N1 | C2 | 73.4° | 60.6° |
| C2' | C1' | N1 | C6 | 107.1° | 119.2° |
| H2' | C2' | O2' | HO2' | 101.6° | 62.1° |
| H2' | C2' | C1' | N1 | 35.0° | 37.3° |
| H2' | C2' | C1' | H1' | 152.4° | 160.3° |
| C1' | N1 | C2 | C6 | 179.5° | 179.7° |
| C1' | N1 | C2 | O2 | 8.7° | 5.6° |
| C1' | N1 | C2 | N3 | 171.5° | 174.3° |
| C1' | N1 | C6 | C5 | 161.1° | 144.3° |
| C1' | N1 | C6 | C7 | 75.6° | 95.8° |
| C1' | N1 | C6 | H6 | 43.7° | 24.1° |
| H1' | C1' | N1 | C2 | 165.3° | 176.5° |
| H1' | C1' | N1 | C6 | 14.2° | 3.8° |
| N1 | C2 | O2 | N3 | 179.8° | 179.9° |
| N1 | C2 | N3 | C4 | 9.5° | 12.0° |
| N1 | C2 | N3 | HN3 | 170.6° | 168.0° |
| C2 | N1 | C6 | C5 | 19.4° | 35.5° |
| C2 | N1 | C6 | C7 | 103.9° | 84.4° |
| C2 | N1 | C6 | H6 | 136.8° | 155.6° |
| C6 | N1 | C2 | O2 | 170.7° | 174.6° |
| C6 | N1 | C2 | N3 | 9.1° | 5.5° |
| N1 | C6 | C5 | C4 | 28.2° | 46.4° |
| N1 | C6 | C5 | C7 | 125.0° | 120.0° |
| N1 | C6 | C5 | H6 | 115.5° | 120.2° |
| N1 | C6 | C5 | H5 | 148.2° | 166.4° |
| N1 | C6 | C5 | H5A | 90.8° | 73.6° |
| N1 | C6 | C7 | H6 | 115.7° | 120.0° |
| N1 | C6 | C7 | O71 | 23.2° | 0.0° |
| N1 | C6 | C7 | O72 | 156.5° | 180.0° |
| O2 | C2 | N3 | C4 | 170.4° | 167.9° |
| O2 | C2 | N3 | HN3 | 9.6° | 12.1° |
| C2 | N3 | C4 | HN3 | 180.0° | 180.0° |
| C2 | N3 | C4 | C5 | 21.6° | 4.4° |
| C2 | N3 | C4 | O4 | 158.9° | 175.5° |
| N3 | C4 | C5 | O4 | 179.6° | 179.9° |
| N3 | C4 | C5 | C6 | 30.6° | 34.1° |
| N3 | C4 | C5 | H5 | 150.6° | 154.1° |
| N3 | C4 | C5 | H5A | 88.4° | 85.8° |
| HN3 | N3 | C4 | C5 | 158.5° | 175.6° |
| HN3 | N3 | C4 | O4 | 21.1° | 4.5° |
| C4 | C5 | C6 | H5 | 120.0° | 120.0° |
| C4 | C5 | C6 | H5A | 119.0° | 119.9° |
| C4 | C5 | H5 | H5A | 119.0° | 120.1° |
| C4 | C5 | C6 | C7 | 96.8° | 73.6° |
| C4 | C5 | C6 | H6 | 143.6° | 166.5° |
| O4 | C4 | C5 | C6 | 149.8° | 145.9° |
| O4 | C4 | C5 | H5 | 29.8° | 25.8° |
| O4 | C4 | C5 | H5A | 91.2° | 94.3° |
| C6 | C5 | H5 | H5A | 119.0° | 120.0° |
| C5 | C6 | C7 | H6 | 117.9° | 119.9° |
| C5 | C6 | C7 | O71 | 103.2° | 120.2° |
| C5 | C6 | C7 | O72 | 77.1° | 59.8° |
| H5 | C5 | C6 | C7 | 23.2° | 46.4° |
| H5 | C5 | C6 | H6 | 96.3° | 73.5° |
| H5A | C5 | C6 | C7 | 144.3° | 166.4° |
| H5A | C5 | C6 | H6 | 24.7° | 46.6° |
| C6 | C7 | O71 | O72 | 179.8° | 180.0° |
| C6 | C7 | O72 | HO72 | 179.8° | 180.0° |
| H6 | C6 | C7 | O71 | 138.9° | 120.0° |
| H6 | C6 | C7 | O72 | 40.8° | 60.0° |
| OP1 | P | OP3 | OP2 | 119.5° | 120.0° |
| OP1 | P | OP2 | HOP2 | 160.9° | 180.0° |
| OP1 | P | OP3 | HOP3 | 179.8° | 60.0° |
| OP3 | P | OP2 | HOP2 | 79.8° | 60.0° |
| OP2 | P | OP3 | HOP3 | 60.3° | 60.0° |
| O71 | C7 | O72 | HO72 | 0.0° | 0.0° |
