2MG
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP1 | doub | 1.48Å | 1.46Å | |
P | OP2 | sing | 1.61Å | 1.49Å | |
P | OP3 | sing | 1.61Å | 1.63Å | |
P | O5' | sing | 1.61Å | 1.58Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.44Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | H5' | sing | 1.09Å | 1.11Å | |
C5' | H5'' | sing | 1.09Å | 1.11Å | |
C4' | O4' | sing | 1.44Å | 1.46Å | |
C4' | C3' | sing | 1.54Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.12Å | |
O4' | C1' | sing | 1.44Å | 1.41Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | C2' | sing | 1.55Å | 1.51Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.43Å | 1.42Å | |
C2' | C1' | sing | 1.54Å | 1.52Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.47Å | 1.46Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
N9 | C8 | sing | 1.36Å | 1.38Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
N7 | C5 | sing | 1.36Å | 1.39Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.41Å | |
C5 | C4 | doub | 1.40Å | 1.39Å | Aromatic |
C6 | O6 | doub | 1.22Å | 1.23Å | |
C6 | N1 | sing | 1.35Å | 1.39Å | |
N1 | C2 | sing | 1.36Å | 1.38Å | |
N1 | HN1 | sing | 0.97Å | 1.02Å | |
C2 | N2 | sing | 1.37Å | 1.34Å | |
C2 | N3 | doub | 1.31Å | 1.33Å | |
N2 | CM2 | sing | 1.47Å | 1.47Å | |
N2 | HN2 | sing | 0.97Å | 1.02Å | |
CM2 | HM21 | sing | 1.09Å | 1.11Å | |
CM2 | HM22 | sing | 1.09Å | 1.12Å | |
CM2 | HM23 | sing | 1.09Å | 1.12Å | |
N3 | C4 | sing | 1.34Å | 1.35Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | OP2 | 119.1° | 109.4° |
OP1 | P | OP3 | 110.9° | 109.5° |
OP1 | P | O5' | 105.6° | 109.5° |
OP2 | P | OP3 | 107.1° | 109.5° |
OP2 | P | O5' | 110.3° | 109.4° |
P | OP2 | HOP2 | 119.1° | 106.8° |
OP3 | P | O5' | 102.6° | 109.5° |
P | OP3 | HOP3 | 110.9° | 106.8° |
P | O5' | C5' | 119.6° | 106.8° |
O5' | C5' | C4' | 110.3° | 109.5° |
O5' | C5' | H5' | 111.9° | 109.5° |
O5' | C5' | H5'' | 111.9° | 109.5° |
C4' | C5' | H5' | 111.9° | 109.5° |
C4' | C5' | H5'' | 111.9° | 109.4° |
C5' | C4' | O4' | 108.4° | 110.4° |
C5' | C4' | C3' | 114.6° | 110.5° |
C5' | C4' | H4' | 105.5° | 110.3° |
H5' | C5' | H5'' | 98.5° | 109.4° |
O4' | C4' | C3' | 105.2° | 104.7° |
O4' | C4' | H4' | 114.8° | 110.4° |
C4' | O4' | C1' | 109.7° | 105.3° |
C3' | C4' | H4' | 108.6° | 110.4° |
C4' | C3' | O3' | 109.3° | 110.5° |
C4' | C3' | C2' | 101.6° | 104.1° |
C4' | C3' | H3' | 115.2° | 110.5° |
O4' | C1' | C2' | 105.9° | 104.9° |
O4' | C1' | N9 | 108.3° | 110.4° |
O4' | C1' | H1' | 116.0° | 110.4° |
O3' | C3' | C2' | 111.3° | 110.6° |
O3' | C3' | H3' | 106.2° | 110.4° |
C3' | O3' | HO3' | 109.3° | 106.8° |
C2' | C3' | H3' | 113.3° | 110.6° |
C3' | C2' | O2' | 109.3° | 110.5° |
C3' | C2' | C1' | 101.6° | 104.0° |
C3' | C2' | H2' | 114.2° | 110.5° |
O2' | C2' | C1' | 108.2° | 110.8° |
O2' | C2' | H2' | 108.1° | 110.4° |
C2' | O2' | HO2' | 109.3° | 106.8° |
C1' | C2' | H2' | 115.1° | 110.4° |
C2' | C1' | N9 | 117.9° | 110.4° |
C2' | C1' | H1' | 105.9° | 110.4° |
N9 | C1' | H1' | 103.4° | 110.3° |
C1' | N9 | C8 | 126.3° | 126.2° |
C1' | N9 | C4 | 127.5° | 126.3° |
C8 | N9 | C4 | 106.2° | 107.5° |
N9 | C8 | N7 | 113.3° | 109.8° |
N9 | C8 | H8 | 125.5° | 125.1° |
N9 | C4 | C5 | 105.4° | 106.1° |
N9 | C4 | N3 | 126.2° | 134.2° |
N7 | C8 | H8 | 121.1° | 125.1° |
C8 | N7 | C5 | 104.2° | 109.3° |
N7 | C5 | C6 | 130.0° | 134.1° |
N7 | C5 | C4 | 110.9° | 107.3° |
C6 | C5 | C4 | 119.1° | 118.6° |
C5 | C6 | O6 | 128.2° | 120.8° |
C5 | C6 | N1 | 111.9° | 118.4° |
C5 | C4 | N3 | 128.4° | 119.7° |
O6 | C6 | N1 | 119.9° | 120.8° |
C6 | N1 | C2 | 124.8° | 120.3° |
C6 | N1 | HN1 | 118.0° | 119.9° |
C2 | N1 | HN1 | 117.1° | 119.8° |
N1 | C2 | N2 | 116.0° | 119.0° |
N1 | C2 | N3 | 123.9° | 121.9° |
N2 | C2 | N3 | 120.1° | 119.1° |
C2 | N2 | CM2 | 124.3° | 120.0° |
C2 | N2 | HN2 | 107.0° | 120.0° |
C2 | N3 | C4 | 111.9° | 121.1° |
CM2 | N2 | HN2 | 107.0° | 120.0° |
N2 | CM2 | HM21 | 124.3° | 109.5° |
N2 | CM2 | HM22 | 107.0° | 109.5° |
N2 | CM2 | HM23 | 107.0° | 109.4° |
HM21 | CM2 | HM22 | 107.0° | 109.5° |
HM21 | CM2 | HM23 | 107.0° | 109.5° |
HM22 | CM2 | HM23 | 102.6° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | OP2 | OP3 | 126.7° | 120.0° |
OP1 | P | OP2 | O5' | 122.3° | 120.0° |
OP1 | P | OP3 | O5' | 112.4° | 120.0° |
OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
OP1 | P | OP3 | HOP3 | 180.0° | 180.0° |
OP1 | P | O5' | C5' | 66.0° | 60.0° |
OP2 | P | OP3 | O5' | 116.2° | 120.0° |
OP2 | P | OP3 | HOP3 | 48.5° | 60.0° |
OP2 | P | O5' | C5' | 63.9° | 180.0° |
OP3 | P | OP2 | HOP2 | 53.3° | 60.0° |
OP3 | P | O5' | C5' | 177.7° | 60.0° |
O5' | P | OP2 | HOP2 | 57.6° | 180.0° |
O5' | P | OP3 | HOP3 | 67.6° | 60.0° |
P | O5' | C5' | C4' | 148.4° | 180.0° |
P | O5' | C5' | H5' | 86.4° | 60.0° |
P | O5' | C5' | H5'' | 23.1° | 60.0° |
O5' | C5' | C4' | H5' | 125.3° | 120.0° |
O5' | C5' | C4' | H5'' | 125.3° | 120.0° |
O5' | C5' | H5' | H5'' | 117.8° | 120.0° |
O5' | C5' | C4' | O4' | 60.2° | 61.5° |
O5' | C5' | C4' | C3' | 57.0° | 176.9° |
O5' | C5' | C4' | H4' | 176.4° | 60.8° |
C4' | C5' | H5' | H5'' | 117.8° | 119.9° |
C5' | C4' | O4' | C3' | 123.1° | 119.0° |
C5' | C4' | O4' | H4' | 117.6° | 122.3° |
C5' | C4' | C3' | H4' | 117.7° | 122.3° |
C5' | C4' | O4' | C1' | 134.9° | 159.5° |
C5' | C4' | C3' | O3' | 91.2° | 98.3° |
C5' | C4' | C3' | C2' | 151.0° | 143.0° |
C5' | C4' | C3' | H3' | 28.1° | 24.2° |
H5' | C5' | C4' | O4' | 174.6° | 178.5° |
H5' | C5' | C4' | C3' | 68.3° | 63.1° |
H5' | C5' | C4' | H4' | 51.2° | 59.2° |
H5'' | C5' | C4' | O4' | 65.1° | 58.6° |
H5'' | C5' | C4' | C3' | 177.7° | 56.8° |
H5'' | C5' | C4' | H4' | 58.3° | 179.1° |
O4' | C4' | C3' | H4' | 123.4° | 118.8° |
O4' | C4' | C3' | O3' | 149.8° | 142.8° |
O4' | C4' | C3' | C2' | 32.1° | 24.1° |
O4' | C4' | C3' | H3' | 90.8° | 94.7° |
C4' | O4' | C1' | C2' | 13.5° | 40.5° |
C4' | O4' | C1' | N9 | 113.8° | 159.4° |
C4' | O4' | C1' | H1' | 130.6° | 78.5° |
C3' | C4' | O4' | C1' | 11.8° | 40.5° |
C4' | C3' | O3' | C2' | 111.5° | 114.7° |
C4' | C3' | O3' | H3' | 124.8° | 122.6° |
C4' | C3' | C2' | H3' | 124.2° | 118.7° |
C4' | C3' | O3' | HO3' | 179.9° | 180.0° |
C4' | C3' | C2' | O2' | 75.1° | 118.8° |
C4' | C3' | C2' | C1' | 39.1° | 0.2° |
C4' | C3' | C2' | H2' | 163.7° | 118.7° |
H4' | C4' | O4' | C1' | 107.5° | 78.3° |
H4' | C4' | C3' | O3' | 26.4° | 24.0° |
H4' | C4' | C3' | C2' | 91.3° | 94.7° |
H4' | C4' | C3' | H3' | 145.8° | 146.5° |
O4' | C1' | C2' | C3' | 33.2° | 23.8° |
O4' | C1' | C2' | O2' | 81.8° | 142.6° |
O4' | C1' | C2' | N9 | 121.3° | 118.9° |
O4' | C1' | C2' | H1' | 123.7° | 118.9° |
O4' | C1' | C2' | H2' | 157.1° | 94.7° |
O4' | C1' | N9 | H1' | 123.5° | 122.2° |
O4' | C1' | N9 | C8 | 9.1° | 27.0° |
O4' | C1' | N9 | C4 | 173.4° | 153.0° |
O3' | C3' | C2' | H3' | 119.6° | 122.6° |
O3' | C3' | C2' | O2' | 41.2° | 0.1° |
O3' | C3' | C2' | C1' | 155.4° | 118.8° |
O3' | C3' | C2' | H2' | 80.1° | 122.7° |
C2' | C3' | O3' | HO3' | 68.5° | 65.3° |
C3' | C2' | O2' | C1' | 109.9° | 114.7° |
C3' | C2' | O2' | H2' | 124.8° | 122.6° |
C3' | C2' | C1' | H2' | 123.9° | 118.6° |
C3' | C2' | O2' | HO2' | 180.0° | 61.4° |
C3' | C2' | C1' | N9 | 88.1° | 142.8° |
C3' | C2' | C1' | H1' | 156.9° | 95.1° |
H3' | C3' | O3' | HO3' | 55.2° | 57.4° |
H3' | C3' | C2' | O2' | 160.7° | 122.5° |
H3' | C3' | C2' | C1' | 85.1° | 118.6° |
H3' | C3' | C2' | H2' | 39.5° | 0.0° |
O2' | C2' | C1' | H2' | 121.1° | 122.7° |
O2' | C2' | C1' | N9 | 156.9° | 98.5° |
O2' | C2' | C1' | H1' | 41.9° | 23.7° |
C1' | C2' | O2' | HO2' | 70.2° | 176.2° |
C2' | C1' | N9 | H1' | 116.4° | 122.3° |
C2' | C1' | N9 | C8 | 129.2° | 88.5° |
C2' | C1' | N9 | C4 | 53.3° | 91.5° |
H2' | C2' | O2' | HO2' | 55.1° | 61.1° |
H2' | C2' | C1' | N9 | 35.8° | 24.2° |
H2' | C2' | C1' | H1' | 79.2° | 146.4° |
C1' | N9 | C8 | C4 | 177.9° | 180.0° |
C1' | N9 | C8 | N7 | 176.3° | 180.0° |
C1' | N9 | C8 | H8 | 3.7° | 0.0° |
C1' | N9 | C4 | C5 | 176.0° | 180.0° |
C1' | N9 | C4 | N3 | 4.9° | 0.1° |
H1' | C1' | N9 | C8 | 114.4° | 149.2° |
H1' | C1' | N9 | C4 | 63.0° | 30.8° |
N9 | C8 | N7 | H8 | 180.0° | 180.0° |
N9 | C8 | N7 | C5 | 0.6° | 0.0° |
C8 | N9 | C4 | C5 | 1.9° | 0.0° |
C8 | N9 | C4 | N3 | 177.2° | 179.9° |
C4 | N9 | C8 | N7 | 1.6° | 0.0° |
C4 | N9 | C8 | H8 | 178.4° | 180.0° |
N9 | C4 | C5 | N7 | 1.7° | 0.0° |
N9 | C4 | C5 | C6 | 179.9° | 180.0° |
N9 | C4 | C5 | N3 | 179.1° | 179.9° |
N9 | C4 | N3 | C2 | 179.3° | 180.0° |
C8 | N7 | C5 | C6 | 178.9° | 180.0° |
C8 | N7 | C5 | C4 | 0.7° | 0.0° |
H8 | C8 | N7 | C5 | 179.5° | 180.0° |
N7 | C5 | C6 | C4 | 178.0° | 180.0° |
N7 | C5 | C6 | O6 | 3.4° | 0.1° |
N7 | C5 | C6 | N1 | 177.1° | 179.7° |
N7 | C5 | C4 | N3 | 177.4° | 180.0° |
C5 | C6 | O6 | N1 | 179.5° | 179.8° |
C5 | C6 | N1 | C2 | 0.5° | 0.5° |
C5 | C6 | N1 | HN1 | 179.5° | 180.0° |
C6 | C5 | C4 | N3 | 1.0° | 0.1° |
C4 | C5 | C6 | O6 | 178.6° | 180.0° |
C4 | C5 | C6 | N1 | 0.9° | 0.2° |
C5 | C4 | N3 | C2 | 0.4° | 0.1° |
O6 | C6 | N1 | C2 | 179.0° | 179.7° |
O6 | C6 | N1 | HN1 | 1.0° | 0.2° |
C6 | N1 | C2 | HN1 | 180.0° | 179.4° |
C6 | N1 | C2 | N2 | 179.8° | 179.7° |
C6 | N1 | C2 | N3 | 0.0° | 0.6° |
N1 | C2 | N2 | N3 | 179.8° | 179.7° |
N1 | C2 | N2 | CM2 | 173.2° | 179.7° |
N1 | C2 | N2 | HN2 | 61.5° | 0.3° |
N1 | C2 | N3 | C4 | 0.1° | 0.3° |
HN1 | N1 | C2 | N2 | 0.2° | 0.3° |
HN1 | N1 | C2 | N3 | 180.0° | 180.0° |
C2 | N2 | CM2 | HN2 | 125.3° | 180.0° |
C2 | N2 | CM2 | HM21 | 179.9° | 180.0° |
C2 | N2 | CM2 | HM22 | 54.7° | 60.0° |
C2 | N2 | CM2 | HM23 | 54.7° | 60.0° |
N2 | C2 | N3 | C4 | 179.9° | 180.0° |
N3 | C2 | N2 | CM2 | 6.6° | 0.0° |
N3 | C2 | N2 | HN2 | 118.6° | 180.0° |
N2 | CM2 | HM21 | HM22 | 125.3° | 120.0° |
N2 | CM2 | HM21 | HM23 | 125.3° | 120.0° |
N2 | CM2 | HM22 | HM23 | 112.4° | 120.0° |
HN2 | N2 | CM2 | HM21 | 54.8° | 0.0° |
HN2 | N2 | CM2 | HM22 | 70.5° | 120.0° |
HN2 | N2 | CM2 | HM23 | 180.0° | 120.0° |
HM21 | CM2 | HM22 | HM23 | 112.4° | 120.0° |