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2MD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PBO3Bsing1.61Å1.63Å
PBO1Bdoub1.48Å1.47Å
PBO2Bsing1.61Å1.48Å
PBO3Asing1.61Å1.65Å
O3BPAsing1.61Å1.62Å
O2BHO2Bsing0.97Å0.95Å
O3AC10sing1.43Å1.46Å
C10C11sing1.53Å1.56Å
C10H101sing1.09Å1.11Å
C10H102sing1.09Å1.11Å
C11O11sing1.42Å1.39Å
C11C12sing1.53Å1.57Å
C11H11sing1.09Å1.12Å
O11C7sing1.44Å1.40Å
C12S12sing1.81Å1.73Å
C12C13sing1.53Å1.40Å
C12H12sing1.09Å1.12Å
S12HS2sing1.35Å0.95Å
C13S13sing1.81Å1.77Å
C13C14sing1.53Å1.56Å
C13H13sing1.09Å1.12Å
S13HS3sing1.35Å0.95Å
C14N15sing1.47Å1.48Å
C14C7sing1.54Å1.57Å
C14H14sing1.09Å1.12Å
N15C16sing1.41Å1.38Å
N15HNFsing0.97Å1.02Å
C16C15sing1.40Å1.45Å
C16C20doub1.39Å1.46Å
C15O14doub1.22Å1.39Å
C15N17sing1.35Å1.37Å
N17C17sing1.36Å1.37Å
N17HNHsing0.97Å1.02Å
C17N16sing1.37Å1.35Å
C17N18doub1.32Å1.36Å
N16HNG1sing0.97Å1.02Å
N16HNG2sing0.97Å1.02Å
N18C20sing1.34Å1.37Å
C20N8sing1.39Å1.36Å
N8C7sing1.47Å1.47Å
N8HN8sing0.97Å1.02Å
C7H7sing1.09Å1.12Å
PAO1Adoub1.48Å1.48Å
PAO2Asing1.61Å1.47Å
PAO5'sing1.61Å1.60Å
O2AHO2Asing0.97Å0.95Å
O5'C5'sing1.43Å1.45Å
C5'C4'sing1.53Å1.54Å
C5'H5'1sing1.09Å1.11Å
C5'H5'2sing1.09Å1.12Å
C4'O4'sing1.44Å1.45Å
C4'C3'sing1.54Å1.55Å
C4'H4'sing1.09Å1.12Å
O4'C1'sing1.44Å1.46Å
C1'N9sing1.46Å1.50Å
C1'C2'sing1.55Å1.54Å
C1'H1'sing1.09Å1.12Å
N9C4sing1.37Å1.39ÅAromatic
N9C8sing1.37Å1.38ÅAromatic
C4N3sing1.34Å1.38Å
C4C5doub1.40Å1.40ÅAromatic
N3C2doub1.31Å1.37Å
C2N2sing1.37Å1.33Å
C2N1sing1.36Å1.40Å
N2HN21sing0.97Å1.02Å
N2HN22sing0.97Å1.02Å
N1C6sing1.35Å1.42Å
N1HN1sing0.97Å1.02Å
C6O6doub1.22Å1.24Å
C6C5sing1.41Å1.47Å
C5N7sing1.36Å1.39ÅAromatic
N7C8doub1.30Å1.32ÅAromatic
C8H8sing1.08Å1.10Å
C2'O2'sing1.43Å1.43Å
C2'C3'sing1.55Å1.55Å
C2'H2'sing1.09Å1.11Å
O2'HO2'sing0.97Å0.95Å
C3'O3'sing1.43Å1.43Å
C3'H3'sing1.09Å1.11Å
O3'HO3'sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3BPBO1B115.4°109.5°
O3BPBO2B114.4°109.5°
O3BPBO3A106.0°109.5°
PBO3BPA123.3°106.8°
O1BPBO2B105.6°109.5°
O1BPBO3A107.8°109.4°
O2BPBO3A107.2°109.4°
PBO2BHO2B114.5°106.8°
PBO3AC10124.0°106.9°
O3BPAO1A103.2°109.5°
O3BPAO2A112.6°109.5°
O3BPAO5'109.5°109.5°
O3AC10C11118.9°109.5°
O3AC10H101108.8°109.5°
O3AC10H102108.8°109.5°
C11C10H101108.8°109.5°
C11C10H102108.8°109.5°
C10C11O1198.2°109.4°
C10C11C12121.6°109.5°
C10C11H11110.2°109.4°
H101C10H102101.3°109.5°
O11C11C12111.6°109.6°
O11C11H11120.5°109.5°
C11O11C7126.4°108.3°
C12C11H1196.5°109.4°
C11C12S12113.5°109.7°
C11C12C13122.1°108.8°
C11C12H1297.0°109.6°
O11C7C14106.6°108.9°
O11C7N8116.0°109.4°
O11C7H7109.8°110.1°
S12C12C13114.2°109.6°
S12C12H12109.7°109.6°
C12S12HS2113.6°100.0°
C13C12H1295.9°109.6°
C12C13S13113.0°109.6°
C12C13C14117.7°109.1°
C12C13H13103.5°109.5°
S13C13C14117.1°109.5°
S13C13H13104.6°109.5°
C13S13HS3113.0°100.0°
C14C13H1397.4°109.6°
C13C14N15123.2°109.7°
C13C14C7113.3°110.2°
C13C14H1495.3°109.6°
N15C14C7111.4°108.0°
N15C14H1498.1°109.7°
C14N15C16121.5°118.0°
C14N15HNF107.9°121.1°
C7C14H14112.7°109.7°
C14C7N8116.4°107.6°
C14C7H7109.4°110.8°
C16N15HNF107.9°121.0°
N15C16C15122.9°120.8°
N15C16C20121.2°120.1°
C15C16C20115.4°119.1°
C16C15O14118.3°120.7°
C16C15N17121.1°118.5°
C16C20N18119.3°119.6°
C16C20N8120.9°120.0°
O14C15N17120.5°120.7°
C15N17C17121.2°120.1°
C15N17HNH119.2°119.9°
C17N17HNH119.6°120.0°
N17C17N16122.0°119.2°
N17C17N18119.6°121.6°
N16C17N18118.2°119.2°
C17N16HNG1122.0°120.0°
C17N16HNG2107.7°120.0°
C17N18C20122.7°121.0°
HNG1N16HNG2107.7°120.0°
N18C20N8119.8°120.4°
C20N8C7119.1°118.6°
C20N8HN8108.8°120.7°
C7N8HN8108.7°120.7°
N8C7H798.3°110.0°
O1APAO2A113.2°109.4°
O1APAO5'109.5°109.5°
O2APAO5'108.7°109.5°
PAO2AHO2A112.6°106.8°
PAO5'C5'125.6°106.8°
O5'C5'C4'112.5°109.5°
O5'C5'H5'1111.1°109.4°
O5'C5'H5'2111.1°109.5°
C4'C5'H5'1111.0°109.5°
C4'C5'H5'2111.1°109.5°
C5'C4'O4'115.0°109.9°
C5'C4'C3'112.2°109.9°
C5'C4'H4'103.0°109.9°
H5'1C5'H5'299.2°109.4°
O4'C4'C3'107.4°107.4°
O4'C4'H4'108.1°109.9°
C4'O4'C1'105.0°107.0°
C3'C4'H4'111.2°109.8°
C4'C3'C2'102.6°104.0°
C4'C3'O3'108.6°110.8°
C4'C3'H3'114.5°110.5°
O4'C1'N9114.0°110.7°
O4'C1'C2'101.6°103.5°
O4'C1'H1'113.4°110.7°
N9C1'C2'113.9°110.7°
N9C1'H1'101.0°110.6°
C1'N9C4128.4°126.3°
C1'N9C8127.7°126.2°
C2'C1'H1'113.5°110.6°
C1'C2'O2'113.0°110.9°
C1'C2'C3'103.6°102.1°
C1'C2'H2'111.0°110.9°
C4N9C8103.8°107.5°
N9C4N3126.2°134.2°
N9C4C5107.2°106.1°
N9C8N7115.6°109.8°
N9C8H8124.3°125.0°
N3C4C5126.5°119.7°
C4N3C2113.6°121.1°
C4C5C6119.2°118.6°
C4C5N7110.0°107.2°
N3C2N2119.9°119.1°
N3C2N1122.9°121.9°
N2C2N1117.2°119.0°
C2N2HN21119.9°120.0°
C2N2HN22108.5°120.0°
C2N1C6124.5°120.3°
C2N1HN1117.0°119.8°
HN21N2HN22108.4°120.0°
C6N1HN1118.5°119.9°
N1C6O6118.5°120.8°
N1C6C5111.8°118.3°
O6C6C5129.5°120.9°
C6C5N7130.8°134.1°
C5N7C8103.4°109.3°
N7C8H8120.1°125.1°
O2'C2'C3'109.4°110.9°
O2'C2'H2'105.4°110.8°
C2'O2'HO2'113.0°106.8°
C3'C2'H2'114.5°111.0°
C2'C3'O3'110.1°110.5°
C2'C3'H3'113.2°110.4°
O3'C3'H3'107.7°110.4°
C3'O3'HO3'108.6°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3BPBO1BO2B127.4°120.1°
O3BPBO1BO3A118.2°120.0°
O3BPBO2BO3A117.2°120.0°
O3BPBO2BHO2B180.0°60.0°
O3BPBO3AC1058.4°180.0°
PBO3BPAO1A179.1°60.0°
PBO3BPAO2A58.5°60.0°
PBO3BPAO5'62.5°180.0°
O1BPBO2BO3A114.8°119.9°
O1BPBO3BPA35.8°60.0°
O1BPBO2BHO2B52.0°180.0°
O1BPBO3AC1065.7°60.0°
O2BPBO3BPA87.0°60.0°
O2BPBO3AC10179.0°60.0°
O3APBO3BPA155.1°180.0°
O3APBO2BHO2B62.7°60.1°
PBO3AC10C11177.0°180.0°
PBO3AC10H10151.8°60.0°
PBO3AC10H10257.7°60.0°
O3BPAO1AO2A122.0°120.0°
O3BPAO1AO5'116.5°120.0°
O3BPAO2AO5'121.5°120.0°
O3BPAO2AHO2A180.0°60.0°
O3BPAO5'C5'58.2°180.0°
O3AC10C11H101125.2°120.0°
O3AC10C11H102125.2°120.0°
O3AC10H101H102114.5°120.0°
O3AC10C11O11111.6°59.9°
O3AC10C11C12126.8°180.0°
O3AC10C11H1115.2°60.1°
C11C10H101H102114.6°120.0°
C10C11O11C12128.7°120.0°
C10C11O11H11119.3°120.0°
C10C11C12H11118.6°119.9°
C10C11O11C7159.1°171.6°
C10C11C12S1230.0°62.0°
C10C11C12C13113.4°178.2°
C10C11C12H12145.1°58.4°
H101C10C11O1113.7°179.9°
H101C10C11C12108.0°60.0°
H101C10C11H11140.4°59.9°
H102C10C11O11123.2°60.1°
H102C10C11C121.6°60.0°
H102C10C11H11110.0°179.9°
O11C11C12H11126.4°120.1°
O11C11C12S12145.0°58.0°
O11C11C12C131.6°61.8°
O11C11C12H1299.9°178.4°
C11O11C7C1455.1°66.6°
C11O11C7N8173.6°176.0°
C11O11C7H763.3°55.1°
C12C11O11C730.4°68.4°
C11C12S12C13146.3°119.3°
C11C12S12H12107.3°120.4°
C11C12C13H12102.1°119.8°
C11C12S12HS2179.9°60.7°
C11C12C13S13140.6°173.4°
C11C12C13C140.8°53.5°
C11C12C13H13106.9°66.4°
H11C11O11C781.6°51.6°
H11C11C12S1288.6°178.1°
H11C11C12C13128.1°58.3°
H11C11C12H1226.5°61.5°
O11C7C14C1347.9°59.4°
O11C7C14N1596.2°60.4°
O11C7C14N8131.1°118.5°
O11C7C14H7118.7°121.2°
O11C7C14H14154.7°179.9°
O11C7N8C2098.5°71.2°
O11C7N8H7116.9°121.0°
O11C7N8HN8136.2°108.3°
S12C12C13H12114.8°120.3°
S12C12C13S132.5°53.5°
S12C12C13C14143.9°66.4°
S12C12C13H13110.1°173.7°
C13C12S12HS233.8°180.0°
C12C13S13C14141.7°119.6°
C12C13S13H13111.9°120.2°
C12C13C14H13109.6°119.9°
C12C13S13HS3179.9°60.4°
C12C13C14N15114.4°65.6°
C12C13C14C724.8°53.2°
C12C13C14H14142.3°173.9°
H12C12S12HS272.6°59.7°
H12C12C13S13117.3°66.8°
H12C12C13C14101.4°173.3°
H12C12C13H134.7°53.4°
S13C13C14H13110.6°120.1°
S13C13C14N1525.4°54.4°
S13C13C14C7164.6°173.1°
S13C13C14H1477.9°66.1°
C14C13S13HS338.4°180.0°
C13C14N15C7139.8°120.1°
C13C14N15H14101.8°120.5°
C13C14C7H14106.8°120.7°
C13C14N15C16160.1°165.2°
C13C14N15HNF74.7°14.8°
C13C14C7N8179.0°178.0°
C13C14C7H770.8°61.8°
H13C13S13HS368.0°59.8°
H13C13C14N15136.0°174.5°
H13C13C14C784.8°66.7°
H13C13C14H1432.7°54.0°
N15C14C7H14109.2°119.5°
C14N15C16HNF125.3°179.9°
C14N15C16C15174.2°164.1°
C14N15C16C202.5°15.8°
N15C14C7N835.0°58.1°
N15C14C7H7145.2°178.4°
C7C14N15C1620.2°45.1°
C7C14N15HNF145.5°134.9°
C14C7N8C2028.1°46.9°
C14C7N8H7116.6°120.8°
C14C7N8HN897.2°133.5°
H14C14N15C1698.1°74.3°
H14C14N15HNF27.1°105.6°
H14C14C7N874.2°61.3°
H14C14C7H736.0°58.9°
N15C16C15C20172.1°180.0°
N15C16C15O1412.7°0.0°
N15C16C15N17171.0°179.7°
N15C16C20N18167.1°180.0°
N15C16C20N812.3°0.1°
HNFN15C16C1548.9°15.8°
HNFN15C16C20122.8°164.2°
C16C15O14N17176.3°179.8°
C16C15N17C171.3°0.5°
C16C15N17HNH178.8°180.0°
C15C16C20N185.2°0.0°
C15C16C20N8175.4°179.9°
C20C16C15O14175.2°180.0°
C20C16C15N171.1°0.2°
C16C20N18C179.9°0.0°
C16C20N18N8179.4°180.0°
C16C20N8C74.2°17.6°
C16C20N8HN8121.1°162.8°
O14C15N17C17174.9°179.8°
O14C15N17HNH5.0°0.2°
C15N17C17HNH180.0°179.6°
C15N17C17N16169.2°179.9°
C15N17C17N185.5°0.5°
N17C17N16N18174.7°179.7°
N17C17N16HNG1180.0°179.7°
N17C17N16HNG254.8°0.6°
N17C17N18C2010.0°0.3°
HNHN17C17N1610.8°0.3°
HNHN17C17N18174.6°179.9°
C17N16HNG1HNG2125.2°179.7°
N16C17N18C20164.9°179.9°
N18C17N16HNG15.3°0.1°
N18C17N16HNG2130.5°179.7°
C17N18C20N8170.7°179.9°
N18C20N8C7176.4°162.3°
N18C20N8HN858.3°17.2°
C20N8C7HN8125.3°179.5°
C20N8C7H7144.6°167.7°
HN8N8C7H719.3°12.7°
O1APAO2AO5'121.9°120.0°
O1APAO2AHO2A63.5°180.0°
O1APAO5'C5'54.2°60.0°
O2APAO5'C5'178.4°60.0°
O5'PAO2AHO2A58.5°60.0°
PAO5'C5'C4'153.6°180.0°
PAO5'C5'H5'128.3°60.0°
PAO5'C5'H5'281.2°59.9°
O5'C5'C4'H5'1125.3°120.0°
O5'C5'C4'H5'2125.3°120.0°
O5'C5'H5'1H5'2117.0°119.9°
O5'C5'C4'O4'58.3°61.7°
O5'C5'C4'C3'64.8°179.7°
O5'C5'C4'H4'175.6°59.3°
C4'C5'H5'1H5'2116.9°120.1°
C5'C4'O4'C3'125.5°119.5°
C5'C4'O4'H4'114.4°121.0°
C5'C4'C3'H4'114.7°121.0°
C5'C4'O4'C1'157.4°146.0°
C5'C4'C3'C2'133.1°121.4°
C5'C4'C3'O3'110.4°119.8°
C5'C4'C3'H3'10.0°2.9°
H5'1C5'C4'O4'176.4°58.2°
H5'1C5'C4'C3'60.6°59.8°
H5'1C5'C4'H4'59.1°179.3°
H5'2C5'C4'O4'67.0°178.3°
H5'2C5'C4'C3'170.0°60.3°
H5'2C5'C4'H4'50.3°60.7°
O4'C4'C3'H4'118.1°119.5°
C4'O4'C1'N9167.4°158.7°
C4'O4'C1'C2'44.4°40.1°
C4'O4'C1'H1'77.8°78.4°
O4'C4'C3'C2'5.9°1.9°
O4'C4'C3'O3'122.4°120.6°
O4'C4'C3'H3'117.2°116.6°
C3'C4'O4'C1'31.9°26.4°
C4'C3'C2'C1'20.6°21.0°
C4'C3'C2'O2'141.4°139.2°
C4'C3'C2'O3'115.5°119.0°
C4'C3'C2'H3'124.0°118.6°
C4'C3'C2'H2'100.5°97.2°
C4'C3'O3'H3'124.5°122.8°
C4'C3'O3'HO3'179.9°176.2°
H4'C4'O4'C1'88.2°93.0°
H4'C4'C3'C2'112.2°117.6°
H4'C4'C3'O3'4.3°1.1°
H4'C4'C3'H3'124.7°123.9°
O4'C1'N9C2'116.0°114.1°
O4'C1'N9H1'122.0°123.0°
O4'C1'C2'H1'122.1°118.5°
O4'C1'N9C4102.2°151.7°
O4'C1'N9C874.3°28.5°
O4'C1'C2'O2'158.1°155.3°
O4'C1'C2'C3'39.8°37.1°
O4'C1'C2'H2'83.6°81.2°
N9C1'C2'H1'114.9°122.9°
C1'N9C4C8177.1°179.8°
C1'N9C4N33.2°0.6°
C1'N9C4C5177.7°179.8°
C1'N9C8N7176.9°180.0°
C1'N9C8H83.1°0.0°
N9C1'C2'O2'78.9°86.1°
N9C1'C2'C3'162.8°155.7°
N9C1'C2'H2'39.4°37.4°
C2'C1'N9C4141.8°94.2°
C2'C1'N9C841.7°85.6°
C1'C2'O2'C3'114.9°112.7°
C1'C2'O2'H2'121.5°123.6°
C1'C2'C3'H2'121.1°118.2°
C1'C2'O2'HO2'180.0°180.0°
C1'C2'C3'O3'94.9°98.0°
C1'C2'C3'H3'144.6°139.6°
H1'C1'N9C419.7°28.7°
H1'C1'N9C8163.8°151.5°
H1'C1'C2'O2'36.0°36.8°
H1'C1'C2'C3'82.3°81.4°
H1'C1'C2'H2'154.2°160.3°
N9C4N3C5178.9°179.2°
N9C4N3C2168.8°179.7°
N9C4C5C6177.5°179.9°
N9C4C5N71.1°0.3°
C4N9C8N70.3°0.2°
C4N9C8H8179.8°179.8°
C8N9C4N3179.6°179.6°
C8N9C4C50.5°0.3°
N9C8N7C50.9°0.0°
N9C8N7H8180.0°180.0°
C4N3C2N2175.3°179.8°
C4N3C2N17.6°0.3°
N3C4C5C61.6°0.5°
N3C4C5N7179.8°179.7°
C5C4N3C210.1°0.5°
C4C5C6N19.0°0.3°
C4C5C6O6166.6°179.8°
C4C5C6N7178.3°179.7°
C4C5N7C81.2°0.2°
N3C2N2N1177.3°179.9°
N3C2N2HN21180.0°0.0°
N3C2N2HN2254.8°180.0°
N3C2N1C63.4°0.1°
N3C2N1HN1176.6°180.0°
C2N2HN21HN22125.3°180.0°
N2C2N1C6173.8°180.0°
N2C2N1HN16.2°0.0°
N1C2N2HN212.7°180.0°
N1C2N2HN22122.5°0.1°
C2N1C6HN1180.0°180.0°
C2N1C6O6164.5°180.0°
C2N1C6C511.6°0.1°
N1C6O6C5175.3°179.9°
N1C6C5N7169.3°180.0°
HN1N1C6O615.5°0.0°
HN1N1C6C5168.4°179.9°
O6C6C5N715.1°0.1°
C6C5N7C8177.2°179.9°
C5N7C8H8179.1°180.0°
O2'C2'C3'H2'118.1°123.6°
O2'C2'C3'O3'25.9°20.2°
O2'C2'C3'H3'94.6°102.2°
C3'C2'O2'HO2'65.1°67.3°
C2'C3'O3'H3'123.8°122.5°
C2'C3'O3'HO3'68.3°61.4°
H2'C2'O2'HO2'58.6°56.4°
H2'C2'C3'O3'144.0°143.8°
H2'C2'C3'H3'23.5°21.4°
H3'C3'O3'HO3'55.5°61.0°

226262

PDB entries from 2024-10-16

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