2MA
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | OP1 | doub | 1.48Å | 1.49Å | |
P | OP2 | sing | 1.61Å | 1.49Å | |
P | OP3 | sing | 1.61Å | 1.60Å | |
P | O5' | sing | 1.61Å | 1.59Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.43Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | H5' | sing | 1.09Å | 1.12Å | |
C5' | H5'' | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.44Å | 1.44Å | |
C4' | C3' | sing | 1.54Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.40Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | C2' | sing | 1.55Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.12Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.43Å | 1.41Å | |
C2' | C1' | sing | 1.54Å | 1.53Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.46Å | 1.46Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
N9 | C8 | sing | 1.37Å | 1.37Å | Aromatic |
N9 | C4 | sing | 1.36Å | 1.37Å | Aromatic |
C8 | N7 | doub | 1.31Å | 1.31Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
N7 | C5 | sing | 1.33Å | 1.39Å | Aromatic |
C5 | C6 | sing | 1.47Å | 1.40Å | |
C5 | C4 | doub | 1.41Å | 1.38Å | Aromatic |
C6 | N6 | doub | 1.31Å | 1.34Å | |
C6 | N1 | sing | 1.40Å | 1.35Å | |
N6 | HN6 | sing | 0.97Å | 1.02Å | |
N1 | C2 | sing | 1.36Å | 1.34Å | |
N1 | HN1 | sing | 0.97Å | 1.02Å | |
C2 | CM2 | sing | 1.51Å | 1.43Å | |
C2 | N3 | doub | 1.31Å | 1.33Å | |
CM2 | HM21 | sing | 1.09Å | 1.11Å | |
CM2 | HM22 | sing | 1.09Å | 1.12Å | |
CM2 | HM23 | sing | 1.09Å | 1.11Å | |
N3 | C4 | sing | 1.34Å | 1.35Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP1 | P | OP2 | 119.1° | 109.5° |
OP1 | P | OP3 | 108.4° | 109.5° |
OP1 | P | O5' | 111.3° | 109.5° |
OP2 | P | OP3 | 108.1° | 109.5° |
OP2 | P | O5' | 107.1° | 109.5° |
P | OP2 | HOP2 | 119.2° | 106.8° |
OP3 | P | O5' | 101.3° | 109.5° |
P | OP3 | HOP3 | 108.3° | 106.8° |
P | O5' | C5' | 118.9° | 106.8° |
O5' | C5' | C4' | 110.8° | 109.5° |
O5' | C5' | H5' | 111.7° | 109.5° |
O5' | C5' | H5'' | 111.7° | 109.5° |
C4' | C5' | H5' | 111.7° | 109.4° |
C4' | C5' | H5'' | 111.7° | 109.4° |
C5' | C4' | O4' | 108.9° | 110.4° |
C5' | C4' | C3' | 117.0° | 110.5° |
C5' | C4' | H4' | 103.8° | 110.2° |
H5' | C5' | H5'' | 98.7° | 109.5° |
O4' | C4' | C3' | 107.3° | 104.8° |
O4' | C4' | H4' | 114.3° | 110.4° |
C4' | O4' | C1' | 109.6° | 105.3° |
C3' | C4' | H4' | 105.7° | 110.4° |
C4' | C3' | O3' | 107.7° | 110.5° |
C4' | C3' | C2' | 102.6° | 104.1° |
C4' | C3' | H3' | 114.3° | 110.5° |
O4' | C1' | C2' | 107.1° | 104.9° |
O4' | C1' | N9 | 106.3° | 110.4° |
O4' | C1' | H1' | 115.4° | 110.4° |
O3' | C3' | C2' | 107.9° | 110.6° |
O3' | C3' | H3' | 109.7° | 110.5° |
C3' | O3' | HO3' | 107.7° | 106.7° |
C2' | C3' | H3' | 114.2° | 110.6° |
C3' | C2' | O2' | 111.0° | 110.5° |
C3' | C2' | C1' | 102.0° | 104.0° |
C3' | C2' | H2' | 113.5° | 110.5° |
O2' | C2' | C1' | 109.9° | 110.8° |
O2' | C2' | H2' | 106.0° | 110.5° |
C2' | O2' | HO2' | 111.0° | 106.8° |
C1' | C2' | H2' | 114.5° | 110.4° |
C2' | C1' | N9 | 115.8° | 110.4° |
C2' | C1' | H1' | 105.9° | 110.3° |
N9 | C1' | H1' | 106.7° | 110.4° |
C1' | N9 | C8 | 129.4° | 126.3° |
C1' | N9 | C4 | 124.7° | 126.3° |
C8 | N9 | C4 | 105.9° | 107.4° |
N9 | C8 | N7 | 113.6° | 109.7° |
N9 | C8 | H8 | 125.3° | 125.1° |
N9 | C4 | C5 | 105.8° | 105.9° |
N9 | C4 | N3 | 127.3° | 133.4° |
N7 | C8 | H8 | 121.1° | 125.1° |
C8 | N7 | C5 | 104.0° | 109.1° |
N7 | C5 | C6 | 132.7° | 133.5° |
N7 | C5 | C4 | 110.7° | 107.8° |
C6 | C5 | C4 | 116.7° | 118.7° |
C5 | C6 | N6 | 123.4° | 123.6° |
C5 | C6 | N1 | 117.9° | 112.7° |
C5 | C4 | N3 | 126.9° | 120.6° |
N6 | C6 | N1 | 118.7° | 123.7° |
C6 | N6 | HN6 | 51.0° | 120.0° |
C6 | N1 | C2 | 118.6° | 118.7° |
C6 | N1 | HN1 | 108.9° | 120.6° |
C2 | N1 | HN1 | 108.9° | 120.7° |
N1 | C2 | CM2 | 114.1° | 118.3° |
N1 | C2 | N3 | 129.2° | 123.4° |
CM2 | C2 | N3 | 116.5° | 118.2° |
C2 | CM2 | HM21 | 114.1° | 109.5° |
C2 | CM2 | HM22 | 110.5° | 109.5° |
C2 | CM2 | HM23 | 110.5° | 109.5° |
C2 | N3 | C4 | 110.7° | 119.3° |
HM21 | CM2 | HM22 | 110.5° | 109.4° |
HM21 | CM2 | HM23 | 110.6° | 109.5° |
HM22 | CM2 | HM23 | 99.8° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP1 | P | OP2 | OP3 | 124.2° | 120.0° |
OP1 | P | OP2 | O5' | 127.4° | 120.0° |
OP1 | P | OP3 | O5' | 117.2° | 120.0° |
OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
OP1 | P | OP3 | HOP3 | 180.0° | 180.0° |
OP1 | P | O5' | C5' | 174.5° | 60.0° |
OP2 | P | OP3 | O5' | 112.4° | 120.0° |
OP2 | P | OP3 | HOP3 | 49.6° | 60.0° |
OP2 | P | O5' | C5' | 53.7° | 180.0° |
OP3 | P | OP2 | HOP2 | 55.9° | 60.0° |
OP3 | P | O5' | C5' | 59.5° | 60.0° |
O5' | P | OP2 | HOP2 | 52.6° | 180.0° |
O5' | P | OP3 | HOP3 | 62.8° | 60.0° |
P | O5' | C5' | C4' | 118.2° | 180.0° |
P | O5' | C5' | H5' | 7.1° | 60.0° |
P | O5' | C5' | H5'' | 116.5° | 60.0° |
O5' | C5' | C4' | H5' | 125.3° | 120.0° |
O5' | C5' | C4' | H5'' | 125.3° | 120.0° |
O5' | C5' | H5' | H5'' | 117.6° | 120.0° |
O5' | C5' | C4' | O4' | 75.7° | 61.4° |
O5' | C5' | C4' | C3' | 46.1° | 176.9° |
O5' | C5' | C4' | H4' | 162.1° | 60.8° |
C4' | C5' | H5' | H5'' | 117.6° | 119.9° |
C5' | C4' | O4' | C3' | 127.6° | 119.0° |
C5' | C4' | O4' | H4' | 115.6° | 122.1° |
C5' | C4' | C3' | H4' | 115.0° | 122.2° |
C5' | C4' | O4' | C1' | 122.9° | 159.5° |
C5' | C4' | C3' | O3' | 147.6° | 98.3° |
C5' | C4' | C3' | C2' | 98.8° | 142.9° |
C5' | C4' | C3' | H3' | 25.4° | 24.3° |
H5' | C5' | C4' | O4' | 159.0° | 178.5° |
H5' | C5' | C4' | C3' | 79.1° | 63.0° |
H5' | C5' | C4' | H4' | 36.8° | 59.3° |
H5'' | C5' | C4' | O4' | 49.6° | 58.6° |
H5'' | C5' | C4' | C3' | 171.4° | 56.9° |
H5'' | C5' | C4' | H4' | 72.6° | 179.2° |
O4' | C4' | C3' | H4' | 122.3° | 118.9° |
O4' | C4' | C3' | O3' | 89.7° | 142.8° |
O4' | C4' | C3' | C2' | 23.9° | 24.0° |
O4' | C4' | C3' | H3' | 148.1° | 94.7° |
C4' | O4' | C1' | C2' | 16.7° | 40.4° |
C4' | O4' | C1' | N9 | 141.1° | 159.3° |
C4' | O4' | C1' | H1' | 100.9° | 78.4° |
C3' | C4' | O4' | C1' | 4.7° | 40.5° |
C4' | C3' | O3' | C2' | 110.1° | 114.7° |
C4' | C3' | O3' | H3' | 124.9° | 122.6° |
C4' | C3' | C2' | H3' | 124.2° | 118.6° |
C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
C4' | C3' | C2' | O2' | 149.3° | 118.8° |
C4' | C3' | C2' | C1' | 32.3° | 0.1° |
C4' | C3' | C2' | H2' | 91.4° | 118.6° |
H4' | C4' | O4' | C1' | 121.5° | 78.4° |
H4' | C4' | C3' | O3' | 32.6° | 23.9° |
H4' | C4' | C3' | C2' | 146.3° | 94.8° |
H4' | C4' | C3' | H3' | 89.5° | 146.5° |
O4' | C1' | C2' | C3' | 31.1° | 23.9° |
O4' | C1' | C2' | O2' | 148.9° | 142.6° |
O4' | C1' | C2' | N9 | 118.4° | 118.9° |
O4' | C1' | C2' | H1' | 123.6° | 118.9° |
O4' | C1' | C2' | H2' | 91.9° | 94.7° |
O4' | C1' | N9 | H1' | 123.6° | 122.3° |
O4' | C1' | N9 | C8 | 87.6° | 27.0° |
O4' | C1' | N9 | C4 | 89.5° | 153.0° |
O3' | C3' | C2' | H3' | 122.2° | 122.7° |
O3' | C3' | C2' | O2' | 35.8° | 0.1° |
O3' | C3' | C2' | C1' | 81.2° | 118.8° |
O3' | C3' | C2' | H2' | 155.1° | 122.7° |
C2' | C3' | O3' | HO3' | 69.9° | 65.3° |
C3' | C2' | O2' | C1' | 112.0° | 114.7° |
C3' | C2' | O2' | H2' | 123.6° | 122.6° |
C3' | C2' | C1' | H2' | 123.0° | 118.5° |
C3' | C2' | O2' | HO2' | 180.0° | 61.4° |
C3' | C2' | C1' | N9 | 149.5° | 142.8° |
C3' | C2' | C1' | H1' | 92.6° | 95.0° |
H3' | C3' | O3' | HO3' | 55.0° | 57.4° |
H3' | C3' | C2' | O2' | 86.4° | 122.6° |
H3' | C3' | C2' | C1' | 156.6° | 118.5° |
H3' | C3' | C2' | H2' | 32.9° | 0.0° |
O2' | C2' | C1' | H2' | 119.2° | 122.8° |
O2' | C2' | C1' | N9 | 92.7° | 98.5° |
O2' | C2' | C1' | H1' | 25.3° | 23.7° |
C1' | C2' | O2' | HO2' | 68.0° | 176.1° |
C2' | C1' | N9 | H1' | 117.5° | 122.2° |
C2' | C1' | N9 | C8 | 31.3° | 88.5° |
C2' | C1' | N9 | C4 | 151.6° | 91.5° |
H2' | C2' | O2' | HO2' | 56.3° | 61.1° |
H2' | C2' | C1' | N9 | 26.5° | 24.2° |
H2' | C2' | C1' | H1' | 144.5° | 146.5° |
C1' | N9 | C8 | C4 | 177.6° | 180.0° |
C1' | N9 | C8 | N7 | 175.9° | 179.6° |
C1' | N9 | C8 | H8 | 4.1° | 0.4° |
C1' | N9 | C4 | C5 | 176.1° | 179.4° |
C1' | N9 | C4 | N3 | 2.7° | 0.1° |
H1' | C1' | N9 | C8 | 148.8° | 149.2° |
H1' | C1' | N9 | C4 | 34.1° | 30.7° |
N9 | C8 | N7 | H8 | 180.0° | 179.9° |
N9 | C8 | N7 | C5 | 0.9° | 0.1° |
C8 | N9 | C4 | C5 | 1.6° | 0.6° |
C8 | N9 | C4 | N3 | 179.6° | 179.9° |
C4 | N9 | C8 | N7 | 1.7° | 0.3° |
C4 | N9 | C8 | H8 | 178.4° | 179.6° |
N9 | C4 | C5 | N7 | 1.2° | 0.7° |
N9 | C4 | C5 | C6 | 178.5° | 179.3° |
N9 | C4 | C5 | N3 | 178.7° | 179.4° |
N9 | C4 | N3 | C2 | 178.3° | 172.9° |
C8 | N7 | C5 | C6 | 179.4° | 179.4° |
C8 | N7 | C5 | C4 | 0.2° | 0.5° |
H8 | C8 | N7 | C5 | 179.1° | 180.0° |
N7 | C5 | C6 | C4 | 179.6° | 179.9° |
N7 | C5 | C6 | N6 | 0.2° | 18.1° |
N7 | C5 | C6 | N1 | 179.8° | 161.6° |
N7 | C5 | C4 | N3 | 179.9° | 180.0° |
C5 | C6 | N6 | N1 | 180.0° | 179.7° |
C5 | C6 | N6 | HN6 | 96.9° | 179.9° |
C5 | C6 | N1 | C2 | 0.0° | 29.8° |
C5 | C6 | N1 | HN1 | 125.2° | 150.7° |
C6 | C5 | C4 | N3 | 0.3° | 0.1° |
C4 | C5 | C6 | N6 | 179.8° | 161.8° |
C4 | C5 | C6 | N1 | 0.2° | 18.4° |
C5 | C4 | N3 | C2 | 0.2° | 8.0° |
N6 | C6 | N1 | C2 | 180.0° | 150.5° |
N6 | C6 | N1 | HN1 | 54.8° | 29.0° |
N1 | C6 | N6 | HN6 | 83.1° | 0.4° |
C6 | N1 | C2 | HN1 | 125.3° | 179.5° |
C6 | N1 | C2 | CM2 | 175.7° | 155.9° |
C6 | N1 | C2 | N3 | 0.1° | 24.4° |
N1 | C2 | CM2 | N3 | 176.2° | 179.7° |
N1 | C2 | CM2 | HM21 | 179.9° | 179.7° |
N1 | C2 | CM2 | HM22 | 54.8° | 60.3° |
N1 | C2 | CM2 | HM23 | 54.7° | 59.7° |
N1 | C2 | N3 | C4 | 0.0° | 4.0° |
HN1 | N1 | C2 | CM2 | 59.0° | 23.6° |
HN1 | N1 | C2 | N3 | 125.3° | 156.1° |
C2 | CM2 | HM21 | HM22 | 125.2° | 120.0° |
C2 | CM2 | HM21 | HM23 | 125.3° | 120.1° |
C2 | CM2 | HM22 | HM23 | 116.3° | 120.0° |
CM2 | C2 | N3 | C4 | 175.5° | 176.3° |
N3 | C2 | CM2 | HM21 | 3.7° | 0.0° |
N3 | C2 | CM2 | HM22 | 121.5° | 120.0° |
N3 | C2 | CM2 | HM23 | 129.0° | 120.1° |
HM21 | CM2 | HM22 | HM23 | 116.5° | 120.0° |