2MA
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.49Å | |
| P | OP2 | sing | 1.61Å | 1.49Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| P | O5' | sing | 1.61Å | 1.59Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.40Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N9 | sing | 1.47Å | 1.46Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N9 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N7 | C5 | sing | 1.35Å | 1.39Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.40Å | Aromatic |
| C5 | C4 | doub | 1.40Å | 1.38Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.34Å | |
| C6 | N1 | doub | 1.33Å | 1.35Å | Aromatic |
| N6 | H62 | sing | 0.97Å | 1.00Å | |
| N1 | C2 | sing | 1.32Å | 1.34Å | Aromatic |
| C2 | CM2 | sing | 1.51Å | 1.43Å | |
| C2 | N3 | doub | 1.32Å | 1.33Å | Aromatic |
| CM2 | HM21 | sing | 1.09Å | 1.10Å | |
| CM2 | HM22 | sing | 1.09Å | 1.10Å | |
| CM2 | HM23 | sing | 1.09Å | 1.10Å | |
| N3 | C4 | sing | 1.33Å | 1.35Å | Aromatic |
| N6 | H61 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.1° | 109.5° |
| OP1 | P | OP3 | 108.4° | 109.5° |
| OP1 | P | O5' | 111.3° | 109.5° |
| OP2 | P | OP3 | 108.1° | 109.5° |
| OP2 | P | O5' | 107.1° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| OP3 | P | O5' | 101.3° | 109.5° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| P | O5' | C5' | 118.9° | 123.0° |
| O5' | C5' | C4' | 110.8° | 109.4° |
| O5' | C5' | H5' | 109.1° | 109.4° |
| O5' | C5' | H5'' | 109.1° | 109.5° |
| C4' | C5' | H5' | 109.1° | 109.5° |
| C4' | C5' | H5'' | 109.1° | 109.5° |
| C5' | C4' | O4' | 108.9° | 109.9° |
| C5' | C4' | C3' | 117.0° | 109.9° |
| C5' | C4' | H4' | 107.5° | 109.9° |
| H5' | C5' | H5'' | 109.5° | 109.5° |
| O4' | C4' | C3' | 107.3° | 107.3° |
| O4' | C4' | H4' | 108.4° | 109.9° |
| C4' | O4' | C1' | 109.6° | 106.9° |
| C3' | C4' | H4' | 107.4° | 110.0° |
| C4' | C3' | O3' | 107.7° | 110.5° |
| C4' | C3' | C2' | 102.6° | 104.2° |
| C4' | C3' | H3' | 112.1° | 110.5° |
| O4' | C1' | C2' | 107.1° | 103.5° |
| O4' | C1' | N9 | 106.3° | 110.6° |
| O4' | C1' | H1' | 110.0° | 110.7° |
| O3' | C3' | C2' | 107.9° | 110.5° |
| O3' | C3' | H3' | 113.8° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C2' | C3' | H3' | 112.1° | 110.6° |
| C3' | C2' | O2' | 111.0° | 110.9° |
| C3' | C2' | C1' | 102.0° | 102.1° |
| C3' | C2' | H2' | 110.6° | 110.9° |
| O2' | C2' | C1' | 109.9° | 110.9° |
| O2' | C2' | H2' | 112.4° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C1' | C2' | H2' | 110.5° | 110.9° |
| C2' | C1' | N9 | 115.8° | 110.6° |
| C2' | C1' | H1' | 108.2° | 110.6° |
| N9 | C1' | H1' | 109.2° | 110.7° |
| C1' | N9 | C8 | 129.4° | 126.3° |
| C1' | N9 | C4 | 124.7° | 126.2° |
| C8 | N9 | C4 | 105.9° | 107.5° |
| N9 | C8 | N7 | 113.6° | 109.9° |
| N9 | C8 | H8 | 123.2° | 125.0° |
| N9 | C4 | C5 | 105.8° | 106.0° |
| N9 | C4 | N3 | 127.3° | 134.9° |
| N7 | C8 | H8 | 123.2° | 125.0° |
| C8 | N7 | C5 | 104.0° | 109.5° |
| N7 | C5 | C6 | 132.7° | 134.7° |
| N7 | C5 | C4 | 110.7° | 107.1° |
| C6 | C5 | C4 | 116.7° | 118.2° |
| C5 | C6 | N6 | 123.4° | 120.8° |
| C5 | C6 | N1 | 117.9° | 118.4° |
| C5 | C4 | N3 | 126.9° | 119.1° |
| N6 | C6 | N1 | 118.7° | 120.8° |
| C6 | N6 | H62 | 109.5° | 120.0° |
| C6 | N6 | H61 | 109.5° | 120.0° |
| C6 | N1 | C2 | 118.6° | 121.2° |
| H62 | N6 | H61 | 109.5° | 120.0° |
| N1 | C2 | CM2 | 114.1° | 118.8° |
| N1 | C2 | N3 | 129.2° | 122.4° |
| CM2 | C2 | N3 | 116.5° | 118.8° |
| C2 | CM2 | HM21 | 109.5° | 109.5° |
| C2 | CM2 | HM22 | 109.5° | 109.5° |
| C2 | CM2 | HM23 | 109.5° | 109.5° |
| C2 | N3 | C4 | 110.7° | 120.6° |
| HM21 | CM2 | HM22 | 109.5° | 109.4° |
| HM21 | CM2 | HM23 | 109.5° | 109.5° |
| HM22 | CM2 | HM23 | 109.4° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 124.2° | 120.0° |
| OP1 | P | OP2 | O5' | 127.4° | 120.0° |
| OP1 | P | OP3 | O5' | 117.2° | 120.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
| OP1 | P | O5' | C5' | 174.5° | 55.0° |
| OP2 | P | OP3 | O5' | 112.4° | 120.0° |
| OP2 | P | OP3 | HOP3 | 130.4° | 60.0° |
| OP2 | P | O5' | C5' | 53.7° | 175.0° |
| OP3 | P | OP2 | HOP2 | 124.2° | 60.0° |
| OP3 | P | O5' | C5' | 59.5° | 65.0° |
| O5' | P | OP2 | HOP2 | 127.4° | 180.0° |
| O5' | P | OP3 | HOP3 | 117.2° | 60.0° |
| P | O5' | C5' | C4' | 118.2° | 180.0° |
| P | O5' | C5' | H5' | 2.0° | 60.0° |
| P | O5' | C5' | H5'' | 121.6° | 60.0° |
| O5' | C5' | C4' | H5' | 120.2° | 119.9° |
| O5' | C5' | C4' | H5'' | 120.2° | 120.0° |
| O5' | C5' | H5' | H5'' | 119.4° | 120.0° |
| O5' | C5' | C4' | O4' | 75.7° | 66.4° |
| O5' | C5' | C4' | C3' | 46.1° | 175.7° |
| O5' | C5' | C4' | H4' | 167.0° | 54.6° |
| C4' | C5' | H5' | H5'' | 119.4° | 120.0° |
| C5' | C4' | O4' | C3' | 127.6° | 119.4° |
| C5' | C4' | O4' | H4' | 116.7° | 121.0° |
| C5' | C4' | C3' | H4' | 121.0° | 121.1° |
| C5' | C4' | O4' | C1' | 122.9° | 146.0° |
| C5' | C4' | C3' | O3' | 147.6° | 119.9° |
| C5' | C4' | C3' | C2' | 98.8° | 121.5° |
| C5' | C4' | C3' | H3' | 21.7° | 2.7° |
| H5' | C5' | C4' | O4' | 164.1° | 53.5° |
| H5' | C5' | C4' | C3' | 74.1° | 64.3° |
| H5' | C5' | C4' | H4' | 46.8° | 174.5° |
| H5'' | C5' | C4' | O4' | 44.5° | 173.5° |
| H5'' | C5' | C4' | C3' | 166.3° | 55.7° |
| H5'' | C5' | C4' | H4' | 72.8° | 65.4° |
| O4' | C4' | C3' | H4' | 116.3° | 119.5° |
| O4' | C4' | C3' | O3' | 89.7° | 120.7° |
| O4' | C4' | C3' | C2' | 23.9° | 2.1° |
| O4' | C4' | C3' | H3' | 144.4° | 116.7° |
| C4' | O4' | C1' | C2' | 16.7° | 40.1° |
| C4' | O4' | C1' | N9 | 141.1° | 158.6° |
| C4' | O4' | C1' | H1' | 100.7° | 78.4° |
| C3' | C4' | O4' | C1' | 4.7° | 26.6° |
| C4' | C3' | O3' | C2' | 110.1° | 114.7° |
| C4' | C3' | O3' | H3' | 124.9° | 122.6° |
| C4' | C3' | C2' | H3' | 120.5° | 118.7° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C4' | C3' | C2' | O2' | 149.3° | 139.1° |
| C4' | C3' | C2' | C1' | 32.3° | 20.9° |
| C4' | C3' | C2' | H2' | 85.2° | 97.3° |
| H4' | C4' | O4' | C1' | 120.4° | 93.0° |
| H4' | C4' | C3' | O3' | 26.6° | 1.2° |
| H4' | C4' | C3' | C2' | 140.3° | 117.4° |
| H4' | C4' | C3' | H3' | 99.3° | 123.8° |
| O4' | C1' | C2' | C3' | 31.1° | 37.1° |
| O4' | C1' | C2' | O2' | 148.9° | 155.3° |
| O4' | C1' | C2' | N9 | 118.4° | 118.4° |
| O4' | C1' | C2' | H1' | 118.6° | 118.6° |
| O4' | C1' | C2' | H2' | 86.5° | 81.1° |
| O4' | C1' | N9 | H1' | 118.7° | 123.0° |
| O4' | C1' | N9 | C8 | 87.6° | 23.6° |
| O4' | C1' | N9 | C4 | 89.5° | 156.8° |
| O3' | C3' | C2' | H3' | 126.0° | 122.6° |
| O3' | C3' | C2' | O2' | 35.8° | 20.4° |
| O3' | C3' | C2' | C1' | 81.2° | 97.8° |
| O3' | C3' | C2' | H2' | 161.2° | 144.0° |
| C2' | C3' | O3' | HO3' | 69.9° | 65.3° |
| C3' | C2' | O2' | C1' | 112.0° | 112.7° |
| C3' | C2' | O2' | H2' | 124.5° | 123.6° |
| C3' | C2' | C1' | H2' | 117.6° | 118.2° |
| C3' | C2' | O2' | HO2' | 180.0° | 61.4° |
| C3' | C2' | C1' | N9 | 149.5° | 155.5° |
| C3' | C2' | C1' | H1' | 87.5° | 81.5° |
| H3' | C3' | O3' | HO3' | 55.1° | 57.4° |
| H3' | C3' | C2' | O2' | 90.2° | 102.2° |
| H3' | C3' | C2' | C1' | 152.8° | 139.6° |
| H3' | C3' | C2' | H2' | 35.2° | 21.4° |
| O2' | C2' | C1' | H2' | 124.6° | 123.6° |
| O2' | C2' | C1' | N9 | 92.7° | 86.3° |
| O2' | C2' | C1' | H1' | 30.3° | 36.7° |
| C1' | C2' | O2' | HO2' | 68.0° | 174.1° |
| C2' | C1' | N9 | H1' | 122.5° | 123.0° |
| C2' | C1' | N9 | C8 | 31.3° | 90.5° |
| C2' | C1' | N9 | C4 | 151.6° | 89.2° |
| H2' | C2' | O2' | HO2' | 55.5° | 62.2° |
| H2' | C2' | C1' | N9 | 31.9° | 37.3° |
| H2' | C2' | C1' | H1' | 154.9° | 160.3° |
| C1' | N9 | C8 | C4 | 177.6° | 179.7° |
| C1' | N9 | C8 | N7 | 175.9° | 180.0° |
| C1' | N9 | C8 | H8 | 4.1° | 0.1° |
| C1' | N9 | C4 | C5 | 176.1° | 179.9° |
| C1' | N9 | C4 | N3 | 2.7° | 0.8° |
| H1' | C1' | N9 | C8 | 153.7° | 146.6° |
| H1' | C1' | N9 | C4 | 29.1° | 33.8° |
| N9 | C8 | N7 | H8 | 180.0° | 179.9° |
| N9 | C8 | N7 | C5 | 0.9° | 0.1° |
| C8 | N9 | C4 | C5 | 1.6° | 0.4° |
| C8 | N9 | C4 | N3 | 179.6° | 179.5° |
| C4 | N9 | C8 | N7 | 1.7° | 0.3° |
| C4 | N9 | C8 | H8 | 178.3° | 179.8° |
| N9 | C4 | C5 | N7 | 1.2° | 0.4° |
| N9 | C4 | C5 | C6 | 178.5° | 179.8° |
| N9 | C4 | C5 | N3 | 178.7° | 179.3° |
| N9 | C4 | N3 | C2 | 178.3° | 179.6° |
| C8 | N7 | C5 | C6 | 179.4° | 180.0° |
| C8 | N7 | C5 | C4 | 0.2° | 0.2° |
| H8 | C8 | N7 | C5 | 179.1° | 180.0° |
| N7 | C5 | C6 | C4 | 179.6° | 179.8° |
| N7 | C5 | C6 | N6 | 0.2° | 0.1° |
| N7 | C5 | C6 | N1 | 179.8° | 180.0° |
| N7 | C5 | C4 | N3 | 179.9° | 179.6° |
| C5 | C6 | N6 | N1 | 180.0° | 179.9° |
| C5 | C6 | N6 | H62 | 180.0° | 0.1° |
| C5 | C6 | N1 | C2 | 0.0° | 0.0° |
| C6 | C5 | C4 | N3 | 0.3° | 0.5° |
| C5 | C6 | N6 | H61 | 60.0° | 180.0° |
| C4 | C5 | C6 | N6 | 179.8° | 179.7° |
| C4 | C5 | C6 | N1 | 0.2° | 0.3° |
| C5 | C4 | N3 | C2 | 0.2° | 0.6° |
| C6 | N6 | H62 | H61 | 120.0° | 179.9° |
| N6 | C6 | N1 | C2 | 180.0° | 179.9° |
| N1 | C6 | N6 | H62 | 0.0° | 180.0° |
| C6 | N1 | C2 | CM2 | 175.7° | 180.0° |
| C6 | N1 | C2 | N3 | 0.1° | 0.1° |
| N1 | C6 | N6 | H61 | 120.0° | 0.1° |
| N1 | C2 | CM2 | N3 | 176.2° | 180.0° |
| N1 | C2 | CM2 | HM21 | 0.0° | 90.1° |
| N1 | C2 | CM2 | HM22 | 120.0° | 150.0° |
| N1 | C2 | CM2 | HM23 | 120.0° | 30.0° |
| N1 | C2 | N3 | C4 | 0.0° | 0.3° |
| C2 | CM2 | HM21 | HM22 | 120.0° | 120.0° |
| C2 | CM2 | HM21 | HM23 | 120.0° | 120.1° |
| C2 | CM2 | HM22 | HM23 | 120.0° | 120.0° |
| CM2 | C2 | N3 | C4 | 175.5° | 179.7° |
| N3 | C2 | CM2 | HM21 | 176.2° | 90.0° |
| N3 | C2 | CM2 | HM22 | 63.8° | 30.0° |
| N3 | C2 | CM2 | HM23 | 56.2° | 150.0° |
| HM21 | CM2 | HM22 | HM23 | 120.0° | 120.0° |
