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Summary Geometry Related PDB entries

2LP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	doub	1.39Å	1.39Å	Aromatic
C1	C3	sing	1.38Å	1.39Å	Aromatic
C1	C4	sing	1.51Å	1.51Å
C2	C5	sing	1.39Å	1.40Å	Aromatic
C2	O6	sing	1.36Å	1.39Å
C3	C7	doub	1.38Å	1.39Å	Aromatic
C3	HC3	sing	1.08Å	1.10Å
C4	C13	sing	1.51Å	1.50Å
C4	HC41	sing	1.09Å	1.11Å
C4	HC42	sing	1.09Å	1.12Å
C5	C8	doub	1.38Å	1.40Å	Aromatic
C5	HC5	sing	1.08Å	1.10Å
O6	HO6	sing	0.97Å	0.95Å
C7	C8	sing	1.38Å	1.40Å	Aromatic
C7	HC7	sing	1.08Å	1.10Å
C8	HC8	sing	1.08Å	1.10Å
C13	C14	doub	1.31Å	1.34Å
C13	H13	sing	1.08Å	1.10Å
C14	H141	sing	1.08Å	1.10Å
C14	H142	sing	1.08Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	C3	121.3°	120.0°
C2	C1	C4	117.4°	120.0°
C1	C2	C5	119.2°	119.8°
C1	C2	O6	114.7°	120.1°
C3	C1	C4	121.2°	120.0°
C1	C3	C7	119.3°	120.0°
C1	C3	HC3	120.4°	120.0°
C1	C4	C13	110.1°	109.5°
C1	C4	HC41	112.0°	109.5°
C1	C4	HC42	112.0°	109.5°
C5	C2	O6	126.0°	120.0°
C2	C5	C8	120.0°	120.0°
C2	C5	HC5	120.1°	120.0°
C2	O6	HO6	114.7°	106.8°
C7	C3	HC3	120.3°	119.9°
C3	C7	C8	120.0°	120.1°
C3	C7	HC7	119.9°	120.0°
C13	C4	HC41	112.0°	109.4°
C13	C4	HC42	112.0°	109.4°
C4	C13	C14	119.4°	120.0°
C4	C13	H13	126.0°	120.0°
HC41	C4	HC42	98.4°	109.5°
C8	C5	HC5	120.0°	120.0°
C5	C8	C7	120.1°	120.0°
C5	C8	HC8	119.9°	120.0°
C8	C7	HC7	120.1°	119.9°
C7	C8	HC8	119.9°	120.0°
C14	C13	H13	114.6°	120.0°
C13	C14	H141	119.4°	120.0°
C13	C14	H142	114.5°	120.0°
H141	C14	H142	126.1°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	C3	C4	177.8°	179.4°
C1	C2	C5	O6	177.8°	179.9°
C2	C1	C3	C7	0.5°	0.5°
C2	C1	C3	HC3	179.5°	179.7°
C2	C1	C4	C13	70.7°	90.6°
C2	C1	C4	HC41	164.0°	29.4°
C2	C1	C4	HC42	54.6°	149.4°
C1	C2	C5	C8	0.6°	0.2°
C1	C2	C5	HC5	179.5°	179.8°
C1	C2	O6	HO6	180.0°	90.2°
C3	C1	C2	C5	0.1°	0.5°
C3	C1	C2	O6	178.2°	179.7°
C1	C3	C7	HC3	180.0°	179.7°
C3	C1	C4	C13	111.4°	90.0°
C3	C1	C4	HC41	13.9°	150.0°
C3	C1	C4	HC42	123.3°	30.0°
C1	C3	C7	C8	1.9°	0.3°
C1	C3	C7	HC7	178.1°	179.7°
C4	C1	C2	C5	178.0°	179.9°
C4	C1	C2	O6	4.0°	0.2°
C4	C1	C3	C7	177.3°	180.0°
C4	C1	C3	HC3	2.7°	0.3°
C1	C4	C13	HC41	125.3°	120.0°
C1	C4	C13	HC42	125.3°	120.1°
C1	C4	HC41	HC42	117.9°	120.1°
C1	C4	C13	C14	169.0°	119.9°
C1	C4	C13	H13	11.0°	60.0°
C2	C5	C8	HC5	180.0°	179.9°
C5	C2	O6	HO6	2.1°	89.9°
C2	C5	C8	C7	1.9°	0.1°
C2	C5	C8	HC8	178.1°	179.9°
O6	C2	C5	C8	177.2°	180.0°
O6	C2	C5	HC5	2.7°	0.1°
C3	C7	C8	C5	2.6°	0.0°
C3	C7	C8	HC7	180.0°	180.0°
C3	C7	C8	HC8	177.4°	179.9°
HC3	C3	C7	C8	178.1°	180.0°
HC3	C3	C7	HC7	1.9°	0.0°
C13	C4	HC41	HC42	117.9°	119.9°
C4	C13	C14	H13	180.0°	179.9°
C4	C13	C14	H141	180.0°	179.9°
C4	C13	C14	H142	0.0°	0.0°
HC41	C4	C13	C14	43.8°	0.1°
HC41	C4	C13	H13	136.3°	180.0°
HC42	C4	C13	C14	65.7°	120.0°
HC42	C4	C13	H13	114.3°	60.1°
C5	C8	C7	HC8	180.0°	180.0°
C5	C8	C7	HC7	177.4°	180.0°
HC5	C5	C8	C7	178.1°	180.0°
HC5	C5	C8	HC8	1.9°	0.1°
HC7	C7	C8	HC8	2.6°	0.1°
C13	C14	H141	H142	179.9°	180.0°
H13	C13	C14	H141	0.0°	0.0°
H13	C13	C14	H142	179.9°	180.0°

223532

PDB entries from 2024-08-07

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