2LM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C | O1 | doub | 1.21Å | 1.24Å | |
| C | CA | sing | 1.48Å | 1.48Å | |
| C | O2 | sing | 1.35Å | 1.26Å | |
| N | CA | doub | 1.28Å | 1.36Å | |
| N | C4A | sing | 1.47Å | 1.30Å | |
| P | OP1 | doub | 1.48Å | 1.51Å | |
| P | OP2 | sing | 1.61Å | 1.46Å | |
| P | OP3 | sing | 1.61Å | 1.52Å | |
| P | OP4 | sing | 1.61Å | 1.63Å | |
| N1 | C2 | doub | 1.32Å | 1.36Å | Aromatic |
| N1 | C6 | sing | 1.32Å | 1.35Å | Aromatic |
| C2 | C3 | sing | 1.39Å | 1.39Å | Aromatic |
| C2 | C2A | sing | 1.51Å | 1.54Å | |
| C3 | O3 | sing | 1.36Å | 1.36Å | |
| C3 | C4 | doub | 1.39Å | 1.42Å | Aromatic |
| C4 | C5 | sing | 1.39Å | 1.39Å | Aromatic |
| C4 | C4A | sing | 1.51Å | 1.50Å | |
| C5 | C6 | doub | 1.38Å | 1.40Å | Aromatic |
| C5 | C5A | sing | 1.51Å | 1.52Å | |
| CA | CB | sing | 1.51Å | 1.55Å | |
| CB | CG | sing | 1.53Å | 1.55Å | |
| SD | CE | sing | 1.81Å | 1.77Å | |
| SD | CG | sing | 1.81Å | 1.81Å | |
| C5A | OP4 | sing | 1.43Å | 1.45Å | |
| O3 | HO3 | sing | 0.97Å | 0.95Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| CB | HB | sing | 1.09Å | 1.10Å | |
| CB | HBA | sing | 1.09Å | 1.10Å | |
| CE | HE | sing | 1.09Å | 1.10Å | |
| CE | HEA | sing | 1.09Å | 1.10Å | |
| CE | HEB | sing | 1.09Å | 1.10Å | |
| CG | HG | sing | 1.09Å | 1.10Å | |
| CG | HGA | sing | 1.09Å | 1.10Å | |
| C2A | H2A | sing | 1.09Å | 1.10Å | |
| C2A | H2A1 | sing | 1.09Å | 1.10Å | |
| C2A | H2A2 | sing | 1.09Å | 1.10Å | |
| C4A | H4A | sing | 1.09Å | 1.10Å | |
| C5A | H5A | sing | 1.09Å | 1.10Å | |
| C5A | H5A1 | sing | 1.09Å | 1.10Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| C4A | H4A1 | sing | 1.09Å | 1.10Å | |
| O2 | H2 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1 | C | CA | 122.3° | 120.0° |
| O1 | C | O2 | 118.9° | 120.0° |
| CA | C | O2 | 118.8° | 120.1° |
| C | CA | N | 114.2° | 120.0° |
| C | CA | CB | 122.7° | 120.1° |
| C | O2 | H2 | 109.5° | 117.1° |
| CA | N | C4A | 130.4° | 120.0° |
| N | CA | CB | 123.0° | 119.9° |
| N | C4A | C4 | 121.5° | 109.4° |
| N | C4A | H4A | 105.6° | 109.5° |
| N | C4A | H4A1 | 105.6° | 109.5° |
| OP1 | P | OP2 | 115.6° | 109.5° |
| OP1 | P | OP3 | 117.2° | 109.5° |
| OP1 | P | OP4 | 101.5° | 109.5° |
| OP2 | P | OP3 | 112.3° | 109.5° |
| OP2 | P | OP4 | 104.1° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| OP3 | P | OP4 | 103.7° | 109.5° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| P | OP4 | C5A | 119.3° | 123.0° |
| C2 | N1 | C6 | 121.5° | 121.8° |
| N1 | C2 | C3 | 119.2° | 120.7° |
| N1 | C2 | C2A | 119.0° | 119.7° |
| N1 | C6 | C5 | 120.9° | 120.9° |
| N1 | C6 | H6 | 119.6° | 119.5° |
| C3 | C2 | C2A | 121.8° | 119.7° |
| C2 | C3 | O3 | 119.5° | 120.5° |
| C2 | C3 | C4 | 121.1° | 119.0° |
| C2 | C2A | H2A | 109.5° | 109.4° |
| C2 | C2A | H2A1 | 109.5° | 109.5° |
| C2 | C2A | H2A2 | 109.4° | 109.5° |
| O3 | C3 | C4 | 119.4° | 120.5° |
| C3 | O3 | HO3 | 109.5° | 114.0° |
| C3 | C4 | C5 | 117.3° | 118.4° |
| C3 | C4 | C4A | 122.1° | 120.8° |
| C5 | C4 | C4A | 120.4° | 120.8° |
| C4 | C5 | C6 | 119.9° | 119.3° |
| C4 | C5 | C5A | 121.7° | 120.4° |
| C4 | C4A | H4A | 105.7° | 109.5° |
| C4 | C4A | H4A1 | 105.6° | 109.5° |
| C6 | C5 | C5A | 118.4° | 120.3° |
| C5 | C6 | H6 | 119.5° | 119.6° |
| C5 | C5A | OP4 | 109.7° | 109.5° |
| C5 | C5A | H5A | 109.4° | 109.5° |
| C5 | C5A | H5A1 | 109.4° | 109.4° |
| CA | CB | CG | 113.6° | 109.5° |
| CA | CB | HB | 108.1° | 109.5° |
| CA | CB | HBA | 108.1° | 109.5° |
| CB | CG | SD | 118.9° | 109.5° |
| CG | CB | HB | 108.1° | 109.5° |
| CG | CB | HBA | 108.1° | 109.5° |
| CB | CG | HG | 106.4° | 109.5° |
| CB | CG | HGA | 106.5° | 109.5° |
| CE | SD | CG | 117.8° | 103.0° |
| SD | CE | HE | 109.5° | 109.5° |
| SD | CE | HEA | 109.5° | 109.5° |
| SD | CE | HEB | 109.5° | 109.4° |
| SD | CG | HG | 106.5° | 109.5° |
| SD | CG | HGA | 106.4° | 109.4° |
| OP4 | C5A | H5A | 109.4° | 109.5° |
| OP4 | C5A | H5A1 | 109.4° | 109.5° |
| HB | CB | HBA | 110.8° | 109.4° |
| HE | CE | HEA | 109.4° | 109.5° |
| HE | CE | HEB | 109.5° | 109.5° |
| HEA | CE | HEB | 109.5° | 109.4° |
| HG | CG | HGA | 112.3° | 109.4° |
| H2A | C2A | H2A1 | 109.4° | 109.4° |
| H2A | C2A | H2A2 | 109.5° | 109.5° |
| H2A1 | C2A | H2A2 | 109.5° | 109.5° |
| H4A | C4A | H4A1 | 113.0° | 109.5° |
| H5A | C5A | H5A1 | 109.6° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1 | C | CA | O2 | 177.2° | 179.7° |
| O1 | C | CA | N | 149.2° | 180.0° |
| O1 | C | CA | CB | 34.2° | 0.0° |
| O1 | C | O2 | H2 | 0.0° | 0.1° |
| C | CA | N | CB | 176.6° | 180.0° |
| C | CA | N | C4A | 179.1° | 175.9° |
| C | CA | CB | CG | 19.9° | 96.3° |
| C | CA | CB | HB | 100.1° | 23.7° |
| C | CA | CB | HBA | 139.9° | 143.7° |
| CA | C | O2 | H2 | 177.3° | 179.8° |
| O2 | C | CA | N | 33.6° | 0.2° |
| O2 | C | CA | CB | 143.0° | 179.7° |
| CA | N | C4A | C4 | 177.2° | 117.5° |
| N | CA | CB | CG | 156.4° | 83.7° |
| N | CA | CB | HB | 83.6° | 156.3° |
| N | CA | CB | HBA | 36.5° | 36.3° |
| CA | N | C4A | H4A | 57.1° | 122.5° |
| CA | N | C4A | H4A1 | 62.9° | 2.5° |
| N | C4A | C4 | C3 | 10.7° | 84.0° |
| N | C4A | C4 | C5 | 163.8° | 96.1° |
| N | C4A | C4 | H4A | 120.0° | 120.0° |
| N | C4A | C4 | H4A1 | 120.0° | 120.0° |
| C4A | N | CA | CB | 2.4° | 4.1° |
| N | C4A | H4A | H4A1 | 115.0° | 120.0° |
| OP1 | P | OP2 | OP3 | 138.1° | 120.0° |
| OP1 | P | OP2 | OP4 | 110.4° | 120.0° |
| OP1 | P | OP3 | OP4 | 110.8° | 120.0° |
| OP1 | P | OP4 | C5A | 178.5° | 55.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 60.0° |
| OP2 | P | OP3 | OP4 | 111.8° | 120.0° |
| OP2 | P | OP4 | C5A | 61.0° | 65.0° |
| OP2 | P | OP3 | HOP3 | 137.4° | 60.0° |
| OP3 | P | OP4 | C5A | 56.6° | 175.0° |
| OP3 | P | OP2 | HOP2 | 138.1° | 60.0° |
| P | OP4 | C5A | C5 | 157.6° | 180.0° |
| P | OP4 | C5A | H5A | 82.4° | 60.0° |
| P | OP4 | C5A | H5A1 | 37.6° | 60.0° |
| OP4 | P | OP2 | HOP2 | 110.4° | 60.0° |
| OP4 | P | OP3 | HOP3 | 110.8° | 180.0° |
| N1 | C2 | C3 | C2A | 179.8° | 179.9° |
| N1 | C2 | C3 | O3 | 179.9° | 180.0° |
| N1 | C2 | C3 | C4 | 0.8° | 0.0° |
| C2 | N1 | C6 | C5 | 0.7° | 0.1° |
| C2 | N1 | C6 | H6 | 179.3° | 179.9° |
| N1 | C2 | C2A | H2A | 0.0° | 90.1° |
| N1 | C2 | C2A | H2A1 | 120.0° | 150.0° |
| N1 | C2 | C2A | H2A2 | 120.0° | 30.0° |
| C6 | N1 | C2 | C3 | 0.2° | 0.0° |
| C6 | N1 | C2 | C2A | 179.6° | 179.9° |
| N1 | C6 | C5 | C4 | 2.6° | 0.1° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| N1 | C6 | C5 | C5A | 179.9° | 180.0° |
| C2 | C3 | O3 | C4 | 179.1° | 180.0° |
| C2 | C3 | C4 | C5 | 2.7° | 0.0° |
| C2 | C3 | C4 | C4A | 177.3° | 180.0° |
| C2 | C3 | O3 | HO3 | 180.0° | 90.0° |
| C3 | C2 | C2A | H2A | 179.8° | 90.0° |
| C3 | C2 | C2A | H2A1 | 60.2° | 29.9° |
| C3 | C2 | C2A | H2A2 | 59.8° | 150.0° |
| C2A | C2 | C3 | O3 | 0.3° | 0.1° |
| C2A | C2 | C3 | C4 | 179.4° | 180.0° |
| C2 | C2A | H2A | H2A1 | 120.0° | 119.9° |
| C2 | C2A | H2A | H2A2 | 120.0° | 120.1° |
| C2 | C2A | H2A1 | H2A2 | 120.0° | 120.1° |
| O3 | C3 | C4 | C5 | 178.3° | 180.0° |
| O3 | C3 | C4 | C4A | 3.6° | 0.1° |
| C3 | C4 | C5 | C4A | 174.8° | 179.9° |
| C3 | C4 | C5 | C6 | 3.5° | 0.0° |
| C3 | C4 | C5 | C5A | 179.4° | 179.9° |
| C4 | C3 | O3 | HO3 | 1.0° | 90.0° |
| C3 | C4 | C4A | H4A | 130.7° | 36.0° |
| C3 | C4 | C4A | H4A1 | 109.3° | 156.0° |
| C4 | C5 | C6 | C5A | 177.3° | 179.9° |
| C4 | C5 | C5A | OP4 | 84.8° | 174.1° |
| C4 | C5 | C6 | H6 | 177.4° | 180.0° |
| C5 | C4 | C4A | H4A | 43.8° | 143.9° |
| C4 | C5 | C5A | H5A | 155.2° | 54.1° |
| C4 | C5 | C5A | H5A1 | 35.2° | 65.8° |
| C5 | C4 | C4A | H4A1 | 76.2° | 23.9° |
| C4A | C4 | C5 | C6 | 178.2° | 179.9° |
| C4A | C4 | C5 | C5A | 4.6° | 0.0° |
| C4 | C4A | H4A | H4A1 | 115.0° | 120.0° |
| C6 | C5 | C5A | OP4 | 92.4° | 5.8° |
| C6 | C5 | C5A | H5A | 27.6° | 125.8° |
| C6 | C5 | C5A | H5A1 | 147.6° | 114.3° |
| C5 | C5A | OP4 | H5A | 120.0° | 120.0° |
| C5 | C5A | OP4 | H5A1 | 120.0° | 120.0° |
| C5A | C5 | C6 | H6 | 0.1° | 0.2° |
| C5 | C5A | H5A | H5A1 | 119.9° | 119.9° |
| CA | CB | CG | HB | 120.0° | 120.0° |
| CA | CB | CG | HBA | 120.0° | 120.0° |
| CA | CB | CG | SD | 115.9° | 180.0° |
| CA | CB | HB | HBA | 118.3° | 120.0° |
| CA | CB | CG | HG | 4.1° | 60.0° |
| CA | CB | CG | HGA | 124.1° | 60.0° |
| CB | CG | SD | CE | 100.0° | 180.0° |
| CB | CG | SD | HG | 120.0° | 120.1° |
| CB | CG | SD | HGA | 120.0° | 120.0° |
| CG | CB | HB | HBA | 118.3° | 120.0° |
| CB | CG | HG | HGA | 116.1° | 120.0° |
| SD | CE | HE | HEA | 120.0° | 120.0° |
| SD | CE | HE | HEB | 120.0° | 120.0° |
| SD | CE | HEA | HEB | 120.0° | 119.9° |
| CE | SD | CG | HG | 20.0° | 59.9° |
| CE | SD | CG | HGA | 140.0° | 60.0° |
| SD | CG | CB | HB | 124.1° | 60.0° |
| SD | CG | CB | HBA | 4.1° | 60.0° |
| CG | SD | CE | HE | 180.0° | 180.0° |
| CG | SD | CE | HEA | 60.0° | 59.9° |
| CG | SD | CE | HEB | 60.0° | 60.0° |
| SD | CG | HG | HGA | 116.1° | 120.0° |
| OP4 | C5A | H5A | H5A1 | 119.9° | 120.0° |
| HB | CB | CG | HG | 115.9° | NaN° |
| HB | CB | CG | HGA | 4.1° | 60.0° |
| HBA | CB | CG | HG | 124.1° | 60.0° |
| HBA | CB | CG | HGA | 115.9° | 180.0° |
| HE | CE | HEA | HEB | 120.0° | 120.1° |
| H2A | C2A | H2A1 | H2A2 | 120.0° | 120.0° |
