2LA
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.49Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| N1 | C2 | sing | 1.36Å | 1.34Å | |
| N1 | C6 | sing | 1.35Å | 1.36Å | |
| N1 | H1N1 | sing | 0.97Å | 1.00Å | |
| C2 | N2 | sing | 1.37Å | 1.31Å | |
| C2 | N3 | doub | 1.31Å | 1.31Å | |
| N2 | HN2 | sing | 0.97Å | 1.00Å | |
| N2 | HN2A | sing | 0.97Å | 1.00Å | |
| N3 | C4 | sing | 1.34Å | 1.34Å | |
| C4 | C5 | doub | 1.40Å | 1.37Å | Aromatic |
| C4 | N9 | sing | 1.36Å | 1.37Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.43Å | |
| C5 | C7 | sing | 1.46Å | 1.42Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.22Å | |
| C7 | C8 | doub | 1.34Å | 1.38Å | Aromatic |
| C7 | C10 | sing | 1.51Å | 1.52Å | |
| C8 | N9 | sing | 1.37Å | 1.37Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N9 | C1' | sing | 1.46Å | 1.47Å | |
| C1' | C2' | sing | 1.54Å | 1.52Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C10 | N11 | sing | 1.47Å | 1.49Å | |
| C10 | H10 | sing | 1.09Å | 1.10Å | |
| C10 | H10A | sing | 1.09Å | 1.10Å | |
| N11 | HN11 | sing | 1.01Å | 1.00Å | |
| N11 | HN1A | sing | 1.01Å | 1.00Å | |
| C2' | C3' | sing | 1.55Å | 1.53Å | |
| C2' | H12' | sing | 1.09Å | 1.10Å | |
| C2' | H22' | sing | 1.09Å | 1.10Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.55Å | 1.54Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| C5' | H15' | sing | 1.09Å | 1.10Å | |
| C5' | H25' | sing | 1.09Å | 1.10Å | |
| P | OP3 | sing | 1.61Å | 1.72Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 118.4° | 109.5° |
| OP1 | P | O5' | 109.4° | 109.4° |
| OP1 | P | OP3 | 100.3° | 109.4° |
| OP2 | P | O5' | 108.8° | 109.5° |
| OP2 | P | OP3 | 101.4° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| P | O5' | C5' | 120.8° | 123.0° |
| O5' | P | OP3 | 118.7° | 109.5° |
| C2 | N1 | C6 | 124.1° | 120.2° |
| C2 | N1 | H1N1 | 117.9° | 119.9° |
| N1 | C2 | N2 | 116.9° | 118.9° |
| N1 | C2 | N3 | 125.8° | 122.1° |
| C6 | N1 | H1N1 | 118.0° | 119.9° |
| N1 | C6 | C5 | 112.5° | 118.2° |
| N1 | C6 | O6 | 118.6° | 120.9° |
| N2 | C2 | N3 | 117.1° | 118.9° |
| C2 | N2 | HN2 | 120.0° | 120.0° |
| C2 | N2 | HN2A | 120.0° | 120.0° |
| C2 | N3 | C4 | 111.6° | 121.2° |
| HN2 | N2 | HN2A | 120.0° | 120.0° |
| N3 | C4 | C5 | 127.3° | 119.2° |
| N3 | C4 | N9 | 126.4° | 133.6° |
| C5 | C4 | N9 | 106.2° | 107.2° |
| C4 | C5 | C6 | 118.5° | 119.1° |
| C4 | C5 | C7 | 113.5° | 106.3° |
| C4 | N9 | C8 | 106.2° | 110.1° |
| C4 | N9 | C1' | 125.8° | 124.9° |
| C6 | C5 | C7 | 128.0° | 134.6° |
| C5 | C6 | O6 | 128.9° | 120.9° |
| C5 | C7 | C8 | 99.4° | 106.7° |
| C5 | C7 | C10 | 138.3° | 126.6° |
| C8 | C7 | C10 | 122.1° | 126.6° |
| C7 | C8 | N9 | 114.7° | 109.6° |
| C7 | C8 | H8 | 122.7° | 125.2° |
| C7 | C10 | N11 | 113.9° | 109.4° |
| C7 | C10 | H10 | 108.0° | 109.5° |
| C7 | C10 | H10A | 108.0° | 109.4° |
| N9 | C8 | H8 | 122.6° | 125.1° |
| C8 | N9 | C1' | 127.9° | 125.0° |
| N9 | C1' | C2' | 110.9° | 109.9° |
| N9 | C1' | O4' | 110.6° | 109.9° |
| N9 | C1' | H1' | 107.1° | 109.9° |
| C2' | C1' | O4' | 107.4° | 107.3° |
| C2' | C1' | H1' | 110.3° | 109.8° |
| C1' | C2' | C3' | 104.0° | 104.2° |
| C1' | C2' | H12' | 111.3° | 110.5° |
| C1' | C2' | H22' | 111.4° | 110.5° |
| O4' | C1' | H1' | 110.6° | 110.0° |
| C1' | O4' | C4' | 107.3° | 107.0° |
| N11 | C10 | H10 | 108.0° | 109.5° |
| N11 | C10 | H10A | 108.0° | 109.5° |
| C10 | N11 | HN11 | 109.5° | 111.0° |
| C10 | N11 | HN1A | 109.5° | 111.0° |
| H10 | C10 | H10A | 110.9° | 109.5° |
| HN11 | N11 | HN1A | 109.5° | 111.0° |
| C3' | C2' | H12' | 111.3° | 110.5° |
| C3' | C2' | H22' | 111.3° | 110.5° |
| C2' | C3' | O3' | 112.8° | 110.9° |
| C2' | C3' | C4' | 103.1° | 102.1° |
| C2' | C3' | H3' | 111.0° | 110.9° |
| H12' | C2' | H22' | 107.6° | 110.6° |
| O3' | C3' | C4' | 108.0° | 110.9° |
| O3' | C3' | H3' | 106.4° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 115.6° | 111.0° |
| C3' | C4' | O4' | 109.6° | 103.5° |
| C3' | C4' | C5' | 114.1° | 110.6° |
| C3' | C4' | H4' | 106.2° | 110.6° |
| O4' | C4' | C5' | 109.4° | 110.6° |
| O4' | C4' | H4' | 111.2° | 110.7° |
| C5' | C4' | H4' | 106.4° | 110.7° |
| C4' | C5' | O5' | 113.2° | 109.5° |
| C4' | C5' | H15' | 108.2° | 109.5° |
| C4' | C5' | H25' | 108.2° | 109.4° |
| O5' | C5' | H15' | 108.2° | 109.5° |
| O5' | C5' | H25' | 108.2° | 109.5° |
| H15' | C5' | H25' | 110.7° | 109.5° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 125.7° | 120.0° |
| OP1 | P | OP2 | OP3 | 108.4° | 120.0° |
| OP1 | P | O5' | OP3 | 114.1° | 120.0° |
| OP1 | P | O5' | C5' | 45.3° | 55.1° |
| OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
| OP2 | P | O5' | OP3 | 115.2° | 120.0° |
| OP2 | P | O5' | C5' | 176.0° | 175.1° |
| OP2 | P | OP3 | HOP3 | 122.0° | 60.0° |
| P | O5' | C5' | C4' | 172.2° | 180.0° |
| P | O5' | C5' | H15' | 52.2° | 59.9° |
| P | O5' | C5' | H25' | 67.8° | 60.1° |
| O5' | P | OP2 | HOP2 | 125.7° | 179.9° |
| O5' | P | OP3 | HOP3 | 119.0° | 60.0° |
| C2 | N1 | C6 | H1N1 | 180.0° | 179.8° |
| N1 | C2 | N2 | N3 | 175.5° | 180.0° |
| N1 | C2 | N2 | HN2 | 175.5° | 0.0° |
| N1 | C2 | N2 | HN2A | 4.5° | 180.0° |
| N1 | C2 | N3 | C4 | 2.2° | 0.0° |
| C2 | N1 | C6 | C5 | 0.9° | 0.0° |
| C2 | N1 | C6 | O6 | 179.9° | 180.0° |
| C6 | N1 | C2 | N2 | 172.1° | 180.0° |
| C6 | N1 | C2 | N3 | 2.9° | 0.0° |
| N1 | C6 | C5 | C4 | 1.3° | 0.0° |
| N1 | C6 | C5 | O6 | 178.9° | 179.9° |
| N1 | C6 | C5 | C7 | 178.3° | 180.0° |
| H1N1 | N1 | C2 | N2 | 7.9° | 0.3° |
| H1N1 | N1 | C2 | N3 | 177.1° | 179.7° |
| H1N1 | N1 | C6 | C5 | 179.1° | 179.7° |
| H1N1 | N1 | C6 | O6 | 0.1° | 0.2° |
| C2 | N2 | HN2 | HN2A | 180.0° | 179.9° |
| N2 | C2 | N3 | C4 | 172.9° | 180.0° |
| N3 | C2 | N2 | HN2 | 0.0° | 180.0° |
| N3 | C2 | N2 | HN2A | 180.0° | 0.0° |
| C2 | N3 | C4 | C5 | 0.3° | 0.0° |
| C2 | N3 | C4 | N9 | 176.8° | 180.0° |
| N3 | C4 | C5 | N9 | 177.0° | 180.0° |
| N3 | C4 | C5 | C6 | 2.1° | 0.0° |
| N3 | C4 | C5 | C7 | 177.6° | 180.0° |
| N3 | C4 | N9 | C8 | 176.4° | 180.0° |
| N3 | C4 | N9 | C1' | 1.8° | 0.0° |
| C4 | C5 | C6 | C7 | 179.6° | 179.9° |
| C4 | C5 | C6 | O6 | 177.6° | 180.0° |
| C4 | C5 | C7 | C8 | 1.5° | 0.0° |
| C4 | C5 | C7 | C10 | 174.9° | 180.0° |
| C5 | C4 | N9 | C8 | 0.6° | 0.0° |
| C5 | C4 | N9 | C1' | 178.8° | 179.9° |
| N9 | C4 | C5 | C6 | 179.1° | 180.0° |
| N9 | C4 | C5 | C7 | 0.6° | 0.0° |
| C4 | N9 | C8 | C7 | 1.7° | 0.0° |
| C4 | N9 | C8 | C1' | 178.2° | 179.9° |
| C4 | N9 | C8 | H8 | 178.3° | 180.0° |
| C4 | N9 | C1' | C2' | 109.2° | 85.0° |
| C4 | N9 | C1' | O4' | 131.8° | 157.2° |
| C4 | N9 | C1' | H1' | 11.2° | 36.0° |
| C6 | C5 | C7 | C8 | 178.2° | 180.0° |
| C6 | C5 | C7 | C10 | 4.7° | 0.1° |
| C7 | C5 | C6 | O6 | 2.8° | 0.1° |
| C5 | C7 | C8 | C10 | 174.8° | 179.9° |
| C5 | C7 | C8 | N9 | 1.9° | 0.0° |
| C5 | C7 | C8 | H8 | 178.1° | 180.0° |
| C5 | C7 | C10 | N11 | 25.3° | 80.0° |
| C5 | C7 | C10 | H10 | 145.3° | 160.0° |
| C5 | C7 | C10 | H10A | 94.7° | 40.0° |
| C7 | C8 | N9 | H8 | 180.0° | 180.0° |
| C7 | C8 | N9 | C1' | 179.8° | 179.9° |
| C8 | C7 | C10 | N11 | 162.4° | 100.1° |
| C8 | C7 | C10 | H10 | 42.4° | 20.0° |
| C8 | C7 | C10 | H10A | 77.6° | 140.0° |
| C10 | C7 | C8 | N9 | 176.7° | 180.0° |
| C10 | C7 | C8 | H8 | 3.3° | 0.0° |
| C7 | C10 | N11 | H10 | 120.0° | 120.0° |
| C7 | C10 | N11 | H10A | 120.0° | 119.9° |
| C7 | C10 | H10 | H10A | 118.2° | 120.0° |
| C7 | C10 | N11 | HN11 | 180.0° | 56.0° |
| C7 | C10 | N11 | HN1A | 60.0° | 180.0° |
| C8 | N9 | C1' | C2' | 68.7° | 95.1° |
| C8 | N9 | C1' | O4' | 50.4° | 22.8° |
| C8 | N9 | C1' | H1' | 171.0° | 144.0° |
| H8 | C8 | N9 | C1' | 0.2° | 0.1° |
| N9 | C1' | C2' | O4' | 120.9° | 119.4° |
| N9 | C1' | C2' | H1' | 118.5° | 121.0° |
| N9 | C1' | O4' | H1' | 118.4° | 121.1° |
| N9 | C1' | C2' | C3' | 148.6° | 121.4° |
| N9 | C1' | C2' | H12' | 91.4° | 119.9° |
| N9 | C1' | C2' | H22' | 28.6° | 2.8° |
| N9 | C1' | O4' | C4' | 151.1° | 145.9° |
| C2' | C1' | O4' | H1' | 120.4° | 119.4° |
| C1' | C2' | C3' | H12' | 120.0° | 118.7° |
| C1' | C2' | C3' | H22' | 120.0° | 118.6° |
| C1' | C2' | H12' | H22' | 122.3° | 122.6° |
| C1' | C2' | C3' | O3' | 101.5° | 139.1° |
| C1' | C2' | C3' | C4' | 14.7° | 20.9° |
| C1' | C2' | C3' | H3' | 139.2° | 97.3° |
| C2' | C1' | O4' | C4' | 29.9° | 26.5° |
| O4' | C1' | C2' | C3' | 27.7° | 2.0° |
| O4' | C1' | C2' | H12' | 147.7° | 120.7° |
| O4' | C1' | C2' | H22' | 92.3° | 116.6° |
| C1' | O4' | C4' | C3' | 20.1° | 40.1° |
| C1' | O4' | C4' | C5' | 145.8° | 158.6° |
| C1' | O4' | C4' | H4' | 97.0° | 78.4° |
| H1' | C1' | C2' | C3' | 92.9° | 117.5° |
| H1' | C1' | C2' | H12' | 27.1° | 1.1° |
| H1' | C1' | C2' | H22' | 147.1° | 123.8° |
| H1' | C1' | O4' | C4' | 90.5° | 92.9° |
| N11 | C10 | H10 | H10A | 118.2° | 120.0° |
| C10 | N11 | HN11 | HN1A | 120.0° | 123.9° |
| H10 | C10 | N11 | HN11 | 60.0° | 64.0° |
| H10 | C10 | N11 | HN1A | 180.0° | 60.0° |
| H10A | C10 | N11 | HN11 | 60.0° | 176.0° |
| H10A | C10 | N11 | HN1A | 60.0° | 60.1° |
| C3' | C2' | H12' | H22' | 122.2° | 122.6° |
| C2' | C3' | O3' | C4' | 113.3° | 112.7° |
| C2' | C3' | O3' | H3' | 122.0° | 123.6° |
| C2' | C3' | C4' | H3' | 121.4° | 118.2° |
| C2' | C3' | C4' | O4' | 2.3° | 37.0° |
| C2' | C3' | C4' | C5' | 125.3° | 155.6° |
| C2' | C3' | C4' | H4' | 117.8° | 81.5° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
| H12' | C2' | C3' | O3' | 18.5° | 20.4° |
| H12' | C2' | C3' | C4' | 134.7° | 97.8° |
| H12' | C2' | C3' | H3' | 100.8° | 144.0° |
| H22' | C2' | C3' | O3' | 138.5° | 102.3° |
| H22' | C2' | C3' | C4' | 105.3° | 139.6° |
| H22' | C2' | C3' | H3' | 19.2° | 21.3° |
| O3' | C3' | C4' | H3' | 119.0° | 123.7° |
| O3' | C3' | C4' | O4' | 122.0° | 155.2° |
| O3' | C3' | C4' | C5' | 115.0° | 86.3° |
| O3' | C3' | C4' | H4' | 1.8° | 36.7° |
| C3' | C4' | O4' | C5' | 125.8° | 118.5° |
| C3' | C4' | O4' | H4' | 117.1° | 118.5° |
| C3' | C4' | C5' | H4' | 116.7° | 122.9° |
| C3' | C4' | C5' | O5' | 59.9° | 175.0° |
| C3' | C4' | C5' | H15' | 179.9° | 55.0° |
| C3' | C4' | C5' | H25' | 60.0° | 65.0° |
| C4' | C3' | O3' | HO3' | 66.7° | 174.2° |
| H3' | C3' | C4' | O4' | 119.0° | 81.2° |
| H3' | C3' | C4' | C5' | 4.0° | 37.3° |
| H3' | C3' | C4' | H4' | 120.8° | 160.3° |
| H3' | C3' | O3' | HO3' | 58.0° | 62.1° |
| O4' | C4' | C5' | H4' | 120.2° | 123.0° |
| O4' | C4' | C5' | O5' | 63.2° | 70.9° |
| O4' | C4' | C5' | H15' | 56.8° | 169.0° |
| O4' | C4' | C5' | H25' | 176.9° | 49.0° |
| C4' | C5' | O5' | H15' | 120.0° | 120.0° |
| C4' | C5' | O5' | H25' | 120.0° | 119.9° |
| C4' | C5' | H15' | H25' | 118.5° | 119.9° |
| H4' | C4' | C5' | O5' | 176.7° | 52.1° |
| H4' | C4' | C5' | H15' | 63.3° | 68.0° |
| H4' | C4' | C5' | H25' | 56.7° | 172.1° |
| O5' | C5' | H15' | H25' | 118.4° | 120.0° |
| C5' | O5' | P | OP3 | 68.8° | 64.9° |
| OP3 | P | OP2 | HOP2 | 108.4° | 60.0° |
