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2L8

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.34Å1.38Å
N1C6sing1.37Å1.38Å
N1C1'sing1.47Å1.48Å
P1O5'1sing1.61Å1.59Å
P1OP3sing1.61Å1.72Å
P1OP1doub1.48Å1.49Å
P1OP2sing1.61Å1.72Å
N11C21sing1.34Å1.38Å
N11C61sing1.37Å1.38Å
N11C1'1sing1.46Å1.48Å
C2O2doub1.22Å1.22Å
C2N3sing1.35Å1.37Å
C21O21doub1.22Å1.22Å
C21N31sing1.35Å1.37Å
C4N3sing1.35Å1.38Å
N3H3sing0.97Å1.00Å
N31C41sing1.35Å1.38Å
N31H1N3sing0.97Å1.00Å
C4O4doub1.22Å1.22Å
C4C5sing1.42Å1.45Å
C41O41doub1.22Å1.23Å
C41C51sing1.42Å1.45Å
C5C6doub1.35Å1.34Å
C5C7sing1.51Å1.50Å
C51C61doub1.35Å1.34Å
C51C71sing1.51Å1.50Å
C6H6sing1.08Å1.08Å
C61H1C6sing1.08Å1.08Å
C7H71sing1.09Å1.10Å
C7H73sing1.09Å1.10Å
C7H72sing1.09Å1.10Å
C71H1C7sing1.09Å1.10Å
C71H1CAsing1.09Å1.10Å
C71H1CBsing1.09Å1.10Å
C1'C2'sing1.54Å1.52Å
C1'O4'sing1.44Å1.42Å
C1'H1'sing1.09Å1.10Å
C1'1C2'1sing1.54Å1.51Å
C1'1O4'1sing1.44Å1.41Å
C1'1H11'sing1.09Å1.10Å
C1AC2Asing1.51Å1.50Å
C1AO3'1sing1.43Å1.44Å
C1AH1Asing1.09Å1.10Å
C1AH1AAsing1.09Å1.10Å
C2'C3'sing1.55Å1.52Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
C2'1C3'1sing1.55Å1.52Å
C2'1HC2'sing1.09Å1.10Å
C2'1H12'sing1.09Å1.10Å
C2AC3Adoub1.35Å1.37ÅAromatic
C2AN4Asing1.34Å1.37ÅAromatic
C3'O3'sing1.43Å1.43Å
C3'C4'sing1.55Å1.53Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C3'1O3'1sing1.43Å1.43Å
C3'1C4'1sing1.55Å1.53Å
C3'1H13'sing1.09Å1.10Å
C3AN6Asing1.35Å1.35ÅAromatic
C3AH3Asing1.08Å1.08Å
C4'O4'sing1.44Å1.45Å
C4'C7Asing1.53Å1.53Å
C4'H4'sing1.09Å1.10Å
C4'1O4'1sing1.44Å1.45Å
C4'1C5'1sing1.53Å1.51Å
C4'1H14'sing1.09Å1.10Å
N4AN5Adoub1.29Å1.30ÅAromatic
C5'1O5'1sing1.43Å1.43Å
C5'1HC5'sing1.09Å1.10Å
C5'1H15'sing1.09Å1.10Å
N5AN6Asing1.29Å1.34ÅAromatic
N6AC7Asing1.46Å1.46Å
C7AH7AAsing1.09Å1.10Å
C7AH7ABsing1.09Å1.10Å
OP3HOP3sing0.97Å0.95Å
OP2HOP2sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6121.4°120.6°
C2N1C1'118.2°119.7°
N1C2O2123.2°119.6°
N1C2N3114.6°120.9°
C6N1C1'120.4°119.7°
N1C6C5123.2°119.7°
N1C6H6118.4°120.1°
N1C1'C2'114.0°109.8°
N1C1'O4'108.0°109.9°
N1C1'H1'106.5°109.8°
O5'1P1OP3108.1°109.5°
O5'1P1OP1108.2°109.5°
O5'1P1OP2119.6°109.4°
P1O5'1C5'1120.8°123.1°
OP3P1OP1119.5°109.5°
OP3P1OP2101.1°109.5°
P1OP3HOP3109.5°114.0°
OP1P1OP2100.9°109.4°
P1OP2HOP2109.5°114.1°
C21N11C61121.5°120.6°
C21N11C1'1118.4°119.7°
N11C21O21123.2°119.6°
N11C21N31114.7°120.9°
C61N11C1'1120.2°119.7°
N11C61C51123.2°119.7°
N11C61H1C6118.4°120.2°
N11C1'1C2'1115.2°109.9°
N11C1'1O4'1108.2°109.9°
N11C1'1H11'105.1°109.9°
O2C2N3122.1°119.5°
C2N3C4127.3°120.3°
C2N3H3116.4°119.9°
O21C21N31122.2°119.5°
C21N31C41127.2°120.3°
C21N31H1N3116.4°119.9°
C4N3H3116.3°119.8°
N3C4O4119.8°120.4°
N3C4C5115.3°119.3°
C41N31H1N3116.4°119.8°
N31C41O41119.9°120.3°
N31C41C51115.2°119.4°
O4C4C5125.0°120.3°
C4C5C6118.2°119.1°
C4C5C7119.1°120.4°
O41C41C51124.9°120.3°
C41C51C61118.3°119.1°
C41C51C71118.9°120.4°
C6C5C7122.8°120.4°
C5C6H6118.4°120.2°
C5C7H71109.5°109.4°
C5C7H73109.5°109.4°
C5C7H72109.5°109.5°
C61C51C71122.8°120.5°
C51C61H1C6118.4°120.1°
C51C71H1C7109.5°109.4°
C51C71H1CA109.5°109.4°
C51C71H1CB109.5°109.4°
H71C7H73109.4°109.5°
H71C7H72109.5°109.5°
H73C7H72109.4°109.5°
H1C7C71H1CA109.5°109.5°
H1C7C71H1CB109.4°109.5°
H1CAC71H1CB109.5°109.5°
C2'C1'O4'106.2°107.4°
C2'C1'H1'108.2°109.9°
C1'C2'C3'104.0°104.1°
C1'C2'H2'111.4°110.5°
C1'C2'H2'A111.3°110.5°
O4'C1'H1'114.2°110.0°
C1'O4'C4'110.6°107.0°
C2'1C1'1O4'1104.7°107.3°
C2'1C1'1H11'108.5°109.9°
C1'1C2'1C3'1102.7°104.2°
C1'1C2'1HC2'111.8°110.5°
C1'1C2'1H12'111.8°110.5°
O4'1C1'1H11'115.5°110.0°
C1'1O4'1C4'1107.7°107.0°
C2AC1AO3'1113.8°109.4°
C2AC1AH1A108.1°109.5°
C2AC1AH1AA108.1°109.5°
C1AC2AC3A130.5°126.8°
C1AC2AN4A122.5°126.7°
O3'1C1AH1A108.0°109.5°
O3'1C1AH1AA108.0°109.5°
C1AO3'1C3'1116.4°114.0°
H1AC1AH1AA110.9°109.5°
C3'C2'H2'111.3°110.5°
C3'C2'H2'A111.3°110.4°
C2'C3'O3'110.4°110.9°
C2'C3'C4'104.3°102.1°
C2'C3'H3'112.6°110.9°
H2'C2'H2'A107.5°110.6°
C3'1C2'1HC2'111.8°110.5°
C3'1C2'1H12'111.8°110.5°
C2'1C3'1O3'1110.5°110.9°
C2'1C3'1C4'1104.4°102.1°
C2'1C3'1H13'112.3°110.9°
HC2'C2'1H12'107.1°110.6°
C3AC2AN4A107.0°106.6°
C2AC3AN6A105.0°106.2°
C2AC3AH3A127.5°126.9°
C2AN4AN5A110.2°108.8°
O3'C3'C4'110.6°110.9°
O3'C3'H3'106.6°110.8°
C3'O3'HO3'109.5°114.0°
C4'C3'H3'112.4°110.9°
C3'C4'O4'106.7°103.5°
C3'C4'C7A115.5°110.6°
C3'C4'H4'106.2°110.6°
O3'1C3'1C4'1110.1°110.9°
O3'1C3'1H13'106.8°110.8°
C4'1C3'1H13'112.7°111.0°
C3'1C4'1O4'1106.0°103.5°
C3'1C4'1C5'1115.2°110.7°
C3'1C4'1H14'107.8°110.6°
N6AC3AH3A127.5°126.9°
C3AN6AN5A110.8°108.3°
C3AN6AC7A129.9°125.9°
O4'C4'C7A105.7°110.6°
O4'C4'H4'116.0°110.6°
C7AC4'H4'107.2°110.7°
C4'C7AN6A113.8°109.5°
C4'C7AH7AA108.1°109.4°
C4'C7AH7AB108.0°109.5°
O4'1C4'1C5'1109.0°110.6°
O4'1C4'1H14'114.2°110.6°
C5'1C4'1H14'104.8°110.7°
C4'1C5'1O5'1110.3°109.5°
C4'1C5'1HC5'109.2°109.5°
C4'1C5'1H15'109.2°109.5°
N4AN5AN6A107.0°110.2°
O5'1C5'1HC5'109.2°109.5°
O5'1C5'1H15'109.2°109.5°
HC5'C5'1H15'109.7°109.5°
N5AN6AC7A119.2°125.9°
N6AC7AH7AA108.1°109.5°
N6AC7AH7AB108.1°109.5°
H7AAC7AH7AB110.8°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C1'179.4°179.8°
N1C2O2N3180.0°180.0°
N1C2N3C40.2°0.0°
N1C2N3H3179.7°180.0°
C2N1C6C51.9°0.0°
C2N1C6H6178.1°180.0°
C2N1C1'C2'64.8°65.1°
C2N1C1'O4'177.5°52.8°
C2N1C1'H1'54.4°174.0°
C6N1C2O2179.3°180.0°
C6N1C2N30.7°0.0°
N1C6C5C41.8°0.0°
N1C6C5H6180.0°180.0°
N1C6C5C7177.5°180.0°
C6N1C1'C2'114.6°114.7°
C6N1C1'O4'3.2°127.4°
C6N1C1'H1'126.2°6.2°
C1'N1C2O21.4°0.3°
C1'N1C2N3178.6°179.8°
C1'N1C6C5177.5°179.7°
C1'N1C6H62.5°0.2°
N1C1'C2'O4'118.7°119.5°
N1C1'C2'H1'118.2°120.9°
N1C1'O4'H1'118.2°121.0°
N1C1'C2'C3'147.7°121.5°
N1C1'C2'H2'92.3°119.9°
N1C1'C2'H2'A27.7°2.9°
N1C1'O4'C4'144.5°145.9°
O5'1P1OP3OP1124.2°120.0°
O5'1P1OP3OP2126.4°120.0°
O5'1P1OP1OP2126.4°119.9°
P1O5'1C5'1C4'1162.6°180.0°
P1O5'1C5'1HC5'42.6°60.0°
P1O5'1C5'1H15'77.4°60.0°
O5'1P1OP3HOP3124.2°180.0°
O5'1P1OP2HOP2118.4°60.1°
OP3P1OP1OP2109.5°120.0°
OP3P1O5'1C5'1171.8°175.0°
OP3P1OP2HOP2123.3°59.9°
OP1P1O5'1C5'157.4°55.0°
OP1P1OP3HOP30.0°60.0°
OP1P1OP2HOP20.0°180.0°
OP2P1O5'1C5'157.1°65.0°
OP2P1OP3HOP3109.3°60.0°
C21N11C61C1'1179.9°179.8°
N11C21O21N31179.8°179.9°
N11C21N31C410.1°0.0°
N11C21N31H1N3179.9°179.9°
C21N11C61C510.3°0.1°
C21N11C61H1C6179.6°180.0°
C21N11C1'1C2'1101.1°65.0°
C21N11C1'1O4'1142.2°52.8°
C21N11C1'1H11'18.3°173.9°
C61N11C21O21179.7°180.0°
C61N11C21N310.1°0.1°
N11C61C51C410.3°0.0°
N11C61C51H1C6180.0°179.9°
N11C61C51C71179.5°180.0°
C61N11C1'1C2'179.0°114.8°
C61N11C1'1O4'137.7°127.4°
C61N11C1'1H11'161.6°6.3°
C1'1N11C21O210.4°0.2°
C1'1N11C21N31179.8°179.7°
C1'1N11C61C51179.6°179.7°
C1'1N11C61H1C60.5°0.2°
N11C1'1C2'1O4'1118.7°119.5°
N11C1'1C2'1H11'117.5°121.0°
N11C1'1O4'1H11'117.4°121.1°
N11C1'1C2'1C3'1155.3°121.4°
N11C1'1C2'1HC2'84.7°119.9°
N11C1'1C2'1H12'35.3°2.8°
N11C1'1O4'1C4'1161.0°145.9°
O2C2N3C4179.8°180.0°
O2C2N3H30.3°0.0°
C2N3C4H3180.0°180.0°
C2N3C4O4179.9°179.9°
C2N3C4C50.2°0.0°
O21C21N31C41179.9°179.9°
O21C21N31H1N30.1°0.0°
C21N31C41H1N3180.0°179.9°
C21N31C41O41179.9°180.0°
C21N31C41C510.1°0.1°
N3C4O4C5179.9°179.9°
N3C4C5C60.8°0.0°
N3C4C5C7178.5°180.0°
H3N3C4O40.2°0.1°
H3N3C4C5179.7°180.0°
N31C41O41C51180.0°179.9°
N31C41C51C610.1°0.1°
N31C41C51C71179.7°179.9°
H1N3N31C41O410.1°0.1°
H1N3N31C41C51179.9°180.0°
O4C4C5C6179.1°180.0°
O4C4C5C71.6°0.1°
C4C5C6C7179.3°179.9°
C4C5C6H6178.2°180.0°
C4C5C7H71180.0°0.0°
C4C5C7H7360.0°120.1°
C4C5C7H7260.0°120.0°
O41C41C51C61179.8°180.0°
O41C41C51C710.4°0.1°
C41C51C61C71179.8°180.0°
C41C51C61H1C6179.6°179.9°
C41C51C71H1C7180.0°0.0°
C41C51C71H1CA60.0°119.9°
C41C51C71H1CB60.0°120.0°
C6C5C7H710.7°180.0°
C6C5C7H73119.3°60.0°
C6C5C7H72120.7°60.0°
C7C5C6H62.5°0.0°
C5C7H71H73120.0°120.0°
C5C7H71H72120.0°120.0°
C5C7H73H72120.0°120.0°
C61C51C71H1C70.2°180.0°
C61C51C71H1CA120.2°60.0°
C61C51C71H1CB119.8°60.0°
C71C51C61H1C60.5°0.1°
C51C71H1C7H1CA120.0°119.9°
C51C71H1C7H1CB120.0°120.0°
C51C71H1CAH1CB120.0°120.0°
H71C7H73H72120.0°120.1°
H1C7C71H1CAH1CB120.0°120.1°
C2'C1'O4'H1'119.2°119.5°
C1'C2'C3'H2'120.0°118.7°
C1'C2'C3'H2'A120.0°118.7°
C1'C2'H2'H2'A122.2°122.7°
C1'C2'C3'O3'94.0°139.1°
C1'C2'C3'C4'24.8°20.9°
C1'C2'C3'H3'147.0°97.4°
C2'C1'O4'C4'21.9°26.5°
O4'C1'C2'C3'29.0°2.0°
O4'C1'C2'H2'149.0°120.6°
O4'C1'C2'H2'A91.0°116.6°
C1'O4'C4'C3'5.7°40.0°
C1'O4'C4'C7A129.1°158.5°
C1'O4'C4'H4'112.3°78.5°
H1'C1'C2'C3'94.0°117.6°
H1'C1'C2'H2'26.0°1.0°
H1'C1'C2'H2'A146.0°123.8°
H1'C1'O4'C4'97.3°93.0°
C2'1C1'1O4'1H11'119.3°119.5°
C1'1C2'1C3'1HC2'120.0°118.7°
C1'1C2'1C3'1H12'120.0°118.6°
C1'1C2'1HC2'H12'122.7°122.6°
C1'1C2'1C3'1O3'196.3°139.1°
C1'1C2'1C3'1C4'122.0°20.9°
C1'1C2'1C3'1H13'144.5°97.4°
C2'1C1'1O4'1C4'137.7°26.5°
O4'1C1'1C2'1C3'136.7°2.0°
O4'1C1'1C2'1HC2'156.7°120.7°
O4'1C1'1C2'1H12'83.3°116.6°
C1'1O4'1C4'1C3'122.9°40.0°
C1'1O4'1C4'1C5'1147.6°158.5°
C1'1O4'1C4'1H14'95.6°78.4°
H11'C1'1C2'1C3'187.2°117.5°
H11'C1'1C2'1HC2'32.8°1.1°
H11'C1'1C2'1H12'152.8°123.8°
H11'C1'1O4'1C4'181.6°93.0°
C2AC1AO3'1H1A120.0°120.0°
C2AC1AO3'1H1AA120.0°120.0°
C2AC1AH1AH1AA118.3°120.0°
C1AC2AC3AN4A180.0°179.8°
C2AC1AO3'1C3'184.8°180.0°
C1AC2AC3AN6A180.0°180.0°
C1AC2AC3AH3A0.1°0.1°
C1AC2AN4AN5A180.0°180.0°
O3'1C1AH1AH1AA118.2°120.0°
C1AO3'1C3'1C2'194.7°91.4°
O3'1C1AC2AC3A62.3°0.0°
O3'1C1AC2AN4A117.7°179.7°
C1AO3'1C3'1C4'1150.5°155.8°
C1AO3'1C3'1H13'27.8°32.2°
H1AC1AC2AC3A57.7°120.0°
H1AC1AC2AN4A122.3°60.3°
H1AC1AO3'1C3'1155.2°60.0°
H1AAC1AC2AC3A177.8°120.0°
H1AAC1AC2AN4A2.3°59.7°
H1AAC1AO3'1C3'135.2°60.0°
C3'C2'H2'H2'A122.2°122.6°
C2'C3'O3'C4'114.9°112.8°
C2'C3'O3'H3'122.6°123.6°
C2'C3'C4'H3'122.3°118.2°
C2'C3'O3'HO3'180.0°61.4°
C2'C3'C4'O4'12.6°37.0°
C2'C3'C4'C7A104.5°155.5°
C2'C3'C4'H4'136.9°81.5°
H2'C2'C3'O3'26.0°20.4°
H2'C2'C3'C4'144.9°97.8°
H2'C2'C3'H3'92.9°144.0°
H2'AC2'C3'O3'146.0°102.2°
H2'AC2'C3'C4'95.2°139.5°
H2'AC2'C3'H3'27.0°21.3°
C3'1C2'1HC2'H12'122.8°122.6°
C2'1C3'1O3'1C4'1114.8°112.7°
C2'1C3'1O3'1H13'122.5°123.6°
C2'1C3'1C4'1H13'122.2°118.2°
C2'1C3'1C4'1O4'10.8°37.0°
C2'1C3'1C4'1C5'1119.8°155.5°
C2'1C3'1C4'1H14'123.6°81.4°
HC2'C2'1C3'1O3'123.7°20.4°
HC2'C2'1C3'1C4'1142.0°97.8°
HC2'C2'1C3'1H13'95.5°144.0°
H12'C2'1C3'1O3'1143.7°102.3°
H12'C2'1C3'1C4'198.0°139.5°
H12'C2'1C3'1H13'24.5°21.3°
C2AC3AN6AH3A180.0°180.0°
C3AC2AN4AN5A0.0°0.2°
C2AC3AN6AN5A0.0°0.1°
C2AC3AN6AC7A179.9°180.0°
N4AC2AC3AN6A0.0°0.2°
N4AC2AC3AH3A180.0°179.8°
C2AN4AN5AN6A0.0°0.1°
O3'C3'C4'H3'119.0°123.5°
O3'C3'C4'O4'106.1°155.2°
O3'C3'C4'C7A136.8°86.3°
O3'C3'C4'H4'18.2°36.8°
C4'C3'O3'HO3'65.0°174.1°
C3'C4'O4'C7A123.4°118.5°
C3'C4'O4'H4'118.0°118.5°
C3'C4'C7AH4'118.1°123.0°
C3'C4'C7AN6A174.7°175.0°
C3'C4'C7AH7AA65.3°55.0°
C3'C4'C7AH7AB54.7°64.9°
H3'C3'O3'HO3'57.4°62.2°
H3'C3'C4'O4'134.9°81.2°
H3'C3'C4'C7A17.9°37.3°
H3'C3'C4'H4'100.8°160.3°
O3'1C3'1C4'1H13'119.2°123.5°
O3'1C3'1C4'1O4'1117.8°155.2°
O3'1C3'1C4'1C5'1121.5°86.3°
O3'1C3'1C4'1H14'4.9°36.8°
C3'1C4'1O4'1C5'1124.6°118.5°
C3'1C4'1O4'1H14'118.6°118.4°
C3'1C4'1C5'1H14'118.3°123.0°
C3'1C4'1C5'1O5'169.6°175.0°
C3'1C4'1C5'1HC5'170.4°55.0°
C3'1C4'1C5'1H15'50.4°65.0°
H13'C3'1C4'1O4'1123.0°81.2°
H13'C3'1C4'1C5'12.3°37.3°
H13'C3'1C4'1H14'114.3°160.3°
C3AN6AC7AC4'25.1°125.0°
C3AN6AN5AN4A0.0°0.0°
C3AN6AN5AC7A179.9°179.9°
C3AN6AC7AH7AA94.9°5.0°
C3AN6AC7AH7AB145.1°115.0°
H3AC3AN6AN5A180.0°179.9°
H3AC3AN6AC7A0.1°0.0°
O4'C4'C7AH4'124.2°122.9°
O4'C4'C7AN6A57.1°70.9°
O4'C4'C7AH7AA177.1°169.1°
O4'C4'C7AH7AB62.9°49.1°
C4'C7AN6AN5A155.0°54.8°
C4'C7AN6AH7AA120.0°120.0°
C4'C7AN6AH7AB120.0°120.0°
C4'C7AH7AAH7AB118.2°119.9°
H4'C4'C7AN6A67.2°52.0°
H4'C4'C7AH7AA52.8°68.0°
H4'C4'C7AH7AB172.8°172.1°
O4'1C4'1C5'1H14'122.7°122.9°
O4'1C4'1C5'1O5'149.4°70.9°
O4'1C4'1C5'1HC5'70.6°169.1°
O4'1C4'1C5'1H15'169.4°49.1°
C4'1C5'1O5'1HC5'120.0°120.0°
C4'1C5'1O5'1H15'120.0°120.0°
C4'1C5'1HC5'H15'119.6°120.0°
H14'C4'1C5'1O5'1172.1°52.0°
H14'C4'1C5'1HC5'52.1°68.0°
H14'C4'1C5'1H15'67.9°172.0°
N4AN5AN6AC7A179.9°179.9°
O5'1C5'1HC5'H15'119.7°120.0°
N5AN6AC7AH7AA85.0°174.8°
N5AN6AC7AH7AB35.0°65.2°
N6AC7AH7AAH7AB118.3°120.1°

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PDB entries from 2024-07-17

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