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SummaryGeometryRelated PDB entries

2JD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O3C16doub1.21Å1.23Å
C16C17sing1.51Å1.50Å
O4C17sing1.43Å1.43Å
C17C18sing1.53Å1.50Å
O3PPsing1.61Å1.61Å
O2PC19sing1.43Å1.42Å
O2PPsing1.61Å1.61Å
C20C18sing1.53Å1.50Å
C18C19sing1.53Å1.50Å
C18C21sing1.53Å1.50Å
PO1Pdoub1.48Å1.61Å
C17H15sing1.09Å1.10Å
O4H16sing0.97Å0.95Å
C19H17sing1.09Å1.10Å
C19H18sing1.09Å1.10Å
C20H19sing1.09Å1.10Å
C20H20sing1.09Å1.10Å
C20H21sing1.09Å1.10Å
C21H22sing1.09Å1.10Å
C21H23sing1.09Å1.10Å
C21H24sing1.09Å1.10Å
POXTsing1.61Å196.75Å
OXTH27sing0.97Å0.00Å
O3PH4sing0.97Å0.95Å
C16O1sing1.34Å1.45Å
O1HXTsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O3C16C17121.1°119.9°
O3C16O1121.3°120.0°
C16C17O4102.6°109.5°
C16C17C18122.2°109.4°
C16C17H15103.6°109.5°
C17C16O1117.6°120.0°
O4C17C18118.3°109.5°
O4C17H15104.3°109.5°
C17O4H16109.5°114.0°
C17C18C20109.9°109.5°
C17C18C19111.3°109.5°
C17C18C21109.6°109.5°
C18C17H15103.6°109.5°
O3PPO2P109.9°109.5°
O3PPO1P109.1°109.5°
O3PPOXT33.9°109.5°
PO3PH4109.5°114.0°
C19O2PP128.4°123.0°
O2PC19C18113.6°109.5°
O2PC19H17108.4°109.5°
O2PC19H18108.4°109.4°
O2PPO1P108.9°109.5°
O2PPOXT79.6°109.4°
C20C18C19107.8°109.5°
C20C18C21109.6°109.5°
C18C20H19109.5°109.5°
C18C20H20109.4°109.4°
C18C20H21109.5°109.4°
C19C18C21108.7°109.4°
C18C19H17108.4°109.5°
C18C19H18108.4°109.4°
C18C21H22109.5°109.5°
C18C21H23109.5°109.5°
C18C21H24109.5°109.4°
O1PPOXT106.5°109.5°
H17C19H18109.5°109.5°
H19C20H20109.5°109.5°
H19C20H21109.5°109.5°
H20C20H21109.5°109.5°
H22C21H23109.5°109.5°
H22C21H24109.4°109.5°
H23C21H24109.5°109.4°
POXTH2790.0°114.0°
C16O1HXT109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O3C16C17O1179.7°179.7°
O3C16C17O4155.2°4.7°
O3C16C17C1869.2°115.3°
O3C16C17H1546.9°124.7°
O3C16O1HXT0.0°0.2°
C16C17O4C18137.7°120.0°
C16C17O4H15107.8°120.0°
C16C17C18H15116.1°120.0°
C16C17C18C2057.9°60.0°
C16C17C18C1961.4°180.0°
C16C17C18C21178.4°60.0°
C16C17O4H16180.0°60.0°
C17C16O1HXT179.6°179.9°
O4C17C18H15114.8°120.0°
O4C17C18C2071.2°180.0°
O4C17C18C19169.5°60.0°
O4C17C18C2149.3°60.0°
O4C17C16O125.1°175.0°
C17C18C19O2P44.5°180.0°
C17C18C20C19121.4°120.0°
C17C18C20C21120.5°120.0°
C17C18C19C21120.7°120.0°
C18C17O4H1642.3°59.9°
C17C18C19H17165.1°60.0°
C17C18C19H1876.1°60.0°
C17C18C20H19180.0°60.0°
C17C18C20H2060.0°180.0°
C17C18C20H2160.0°60.0°
C17C18C21H22180.0°59.9°
C17C18C21H2360.0°180.0°
C17C18C21H2460.0°60.0°
C18C17C16O1110.5°65.0°
O3PPO2PC1991.9°175.0°
O3PPO2PO1P119.4°120.0°
O3PPO2POXT15.4°120.0°
O3PPO1POXT35.5°120.0°
O3PPOXTH2790.0°60.0°
O2PC19C18C20165.1°60.0°
O2PC19C18H17120.6°120.0°
O2PC19C18H18120.6°120.0°
O2PC19C18C2176.2°60.0°
C19O2PPO1P148.7°55.0°
O2PC19H17H18118.1°120.0°
C19O2PPOXT107.2°65.0°
PO2PC19C18160.4°180.0°
O2PPO1POXT84.4°120.0°
PO2PC19H1739.7°60.0°
PO2PC19H1879.0°60.0°
O2PPOXTH2790.0°60.0°
O2PPO3PH4119.3°180.0°
C20C18C19C21118.7°120.0°
C20C18C17H15174.0°60.0°
C20C18C19H1774.3°180.0°
C20C18C19H1844.5°60.0°
C18C20H19H20120.0°120.0°
C18C20H19H21120.0°120.0°
C18C20H20H21120.0°120.0°
C20C18C21H2259.3°180.0°
C20C18C21H2360.7°59.9°
C20C18C21H24179.3°60.0°
C19C18C17H1554.7°60.0°
C18C19H17H18118.1°120.0°
C19C18C20H1958.6°180.0°
C19C18C20H2061.4°60.0°
C19C18C20H21178.6°60.0°
C19C18C21H2258.2°60.1°
C19C18C21H23178.3°60.0°
C19C18C21H2461.8°180.0°
C21C18C17H1565.5°180.0°
C21C18C19H1744.4°60.0°
C21C18C19H18163.2°180.0°
C21C18C20H1959.5°60.0°
C21C18C20H20179.5°60.0°
C21C18C20H2160.5°180.0°
C18C21H22H23120.0°120.1°
C18C21H22H24120.0°119.9°
C18C21H23H24120.0°119.9°
O1PPOXTH2790.0°180.0°
O1PPO3PH40.0°60.0°
H15C17O4H1672.2°180.0°
H15C17C16O1133.5°55.0°
H19C20H20H21120.0°120.1°
H22C21H23H24120.0°120.0°
OXTPO3PH491.4°60.0°

222624

PDB entries from 2024-07-17

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