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Summary Geometry Related PDB entries

2HP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	O1	doub	1.54Å	1.50Å
P	O2	sing	1.61Å	1.51Å
P	O3	sing	1.61Å	1.49Å
P	O4	sing	1.54Å	1.54Å
O3	HO3	sing	0.97Å	0.95Å
O4	HO4	sing	1.56Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	P	O2	110.7°	109.5°
O1	P	O3	111.7°	109.5°
O1	P	O4	107.2°	109.5°
O2	P	O3	112.4°	109.5°
O2	P	O4	107.2°	109.5°
O3	P	O4	107.4°	109.5°
P	O3	HO3	111.7°	106.8°
P	O4	HO4	107.1°	0.6°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	P	O2	O3	125.6°	120.0°
O1	P	O2	O4	116.6°	120.0°
O1	P	O3	O4	117.2°	120.0°
O1	P	O3	HO3	179.9°	60.0°
O1	P	O4	HO4	180.0°	180.0°
O2	P	O3	O4	117.7°	120.0°
O2	P	O3	HO3	54.9°	180.0°
O2	P	O4	HO4	61.1°	60.0°
O3	P	O4	HO4	59.9°	60.0°
O4	P	O3	HO3	62.8°	60.0°

222926

PDB entries from 2024-07-24

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