English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

2HF

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C	O	doub	1.21Å	1.24Å
C	CA	sing	1.51Å	1.51Å
C	OXT	sing	1.34Å	1.43Å
N	CA	sing	1.47Å	1.47Å
N	H	sing	1.01Å	1.00Å
N	H2	sing	1.01Å	1.00Å
F1	CE1	sing	1.35Å	1.40Å
CA	CB	sing	1.53Å	1.53Å
CA	HA	sing	1.09Å	1.10Å
CB	CG	sing	1.51Å	1.52Å
CB	HB	sing	1.09Å	1.10Å
CB	HBA	sing	1.09Å	1.10Å
CG	ND1	sing	1.34Å	1.35Å	Aromatic
CG	CD2	doub	1.34Å	1.40Å	Aromatic
ND1	CE1	doub	1.31Å	1.34Å	Aromatic
ND1	HND1	sing	0.97Å	1.00Å
CD2	NE2	sing	1.37Å	1.35Å	Aromatic
CD2	HD2	sing	1.08Å	1.08Å
CE1	NE2	sing	1.35Å	1.33Å	Aromatic
NE2	HE2	sing	0.97Å	1.00Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O	C	CA	120.3°	119.9°
O	C	OXT	119.9°	120.0°
CA	C	OXT	119.8°	120.1°
C	CA	N	113.9°	109.5°
C	CA	CB	107.6°	109.5°
C	CA	HA	107.4°	109.4°
C	OXT	HXT	109.5°	117.0°
CA	N	H	109.5°	111.0°
CA	N	H2	109.5°	111.0°
N	CA	CB	108.3°	109.5°
N	CA	HA	106.7°	109.5°
H	N	H2	109.4°	111.0°
F1	CE1	ND1	123.9°	125.7°
F1	CE1	NE2	122.0°	125.7°
CB	CA	HA	113.1°	109.5°
CA	CB	CG	112.9°	109.5°
CA	CB	HB	108.4°	109.5°
CA	CB	HBA	108.4°	109.4°
CG	CB	HB	108.4°	109.5°
CG	CB	HBA	108.3°	109.5°
CB	CG	ND1	126.8°	125.9°
CB	CG	CD2	125.3°	126.0°
HB	CB	HBA	110.6°	109.4°
ND1	CG	CD2	107.9°	108.0°
CG	ND1	CE1	104.8°	109.3°
CG	ND1	HND1	127.6°	125.4°
CG	CD2	NE2	107.9°	106.9°
CG	CD2	HD2	126.0°	126.5°
CE1	ND1	HND1	127.6°	125.3°
ND1	CE1	NE2	114.1°	108.6°
NE2	CD2	HD2	126.1°	126.6°
CD2	NE2	CE1	105.3°	107.2°
CD2	NE2	HE2	127.4°	126.4°
CE1	NE2	HE2	127.4°	126.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O	C	CA	OXT	180.0°	179.7°
O	C	CA	N	164.0°	20.1°
O	C	CA	CB	43.9°	100.0°
O	C	CA	HA	78.1°	140.0°
O	C	OXT	HXT	0.0°	0.1°
C	CA	N	CB	119.7°	120.1°
C	CA	N	HA	118.3°	119.9°
C	CA	N	H	180.0°	60.1°
C	CA	N	H2	60.0°	176.0°
C	CA	CB	HA	118.4°	119.9°
C	CA	CB	CG	175.5°	174.9°
C	CA	CB	HB	64.5°	65.0°
C	CA	CB	HBA	55.5°	54.9°
CA	C	OXT	HXT	180.0°	179.7°
OXT	C	CA	N	16.0°	160.3°
OXT	C	CA	CB	136.1°	79.7°
OXT	C	CA	HA	101.9°	40.3°
CA	N	H	H2	120.0°	123.9°
N	CA	CB	HA	118.0°	120.0°
N	CA	CB	CG	60.9°	65.0°
N	CA	CB	HB	59.1°	55.0°
N	CA	CB	HBA	179.1°	175.0°
H	N	CA	CB	60.3°	60.0°
H	N	CA	HA	61.7°	180.0°
H2	N	CA	CB	179.7°	64.0°
H2	N	CA	HA	58.2°	56.1°
F1	CE1	ND1	CG	179.6°	180.0°
F1	CE1	ND1	NE2	180.0°	179.9°
F1	CE1	ND1	HND1	0.4°	0.0°
F1	CE1	NE2	CD2	179.7°	179.9°
F1	CE1	NE2	HE2	0.3°	0.1°
CA	CB	CG	HB	120.0°	120.1°
CA	CB	CG	HBA	120.0°	120.0°
CA	CB	HB	HBA	118.6°	119.9°
CA	CB	CG	ND1	98.9°	95.0°
CA	CB	CG	CD2	80.3°	85.3°
HA	CA	CB	CG	57.1°	55.0°
HA	CA	CB	HB	177.1°	175.0°
HA	CA	CB	HBA	62.9°	65.0°
CG	CB	HB	HBA	118.6°	120.0°
CB	CG	ND1	CD2	179.3°	179.7°
CB	CG	ND1	CE1	179.6°	180.0°
CB	CG	ND1	HND1	0.4°	0.1°
CB	CG	CD2	NE2	179.5°	180.0°
CB	CG	CD2	HD2	0.5°	0.0°
HB	CB	CG	ND1	141.2°	25.0°
HB	CB	CG	CD2	39.7°	154.7°
HBA	CB	CG	ND1	21.1°	145.0°
HBA	CB	CG	CD2	159.7°	34.7°
CG	ND1	CE1	HND1	180.0°	179.9°
ND1	CG	CD2	NE2	0.2°	0.3°
ND1	CG	CD2	HD2	179.8°	179.7°
CG	ND1	CE1	NE2	0.4°	0.1°
CD2	CG	ND1	CE1	0.4°	0.2°
CD2	CG	ND1	HND1	179.6°	179.8°
CG	CD2	NE2	HD2	180.0°	180.0°
CG	CD2	NE2	CE1	0.0°	0.2°
CG	CD2	NE2	HE2	180.0°	180.0°
ND1	CE1	NE2	CD2	0.3°	0.0°
ND1	CE1	NE2	HE2	179.8°	179.8°
HND1	ND1	CE1	NE2	179.6°	179.9°
CD2	NE2	CE1	HE2	180.0°	179.8°
HD2	CD2	NE2	CE1	180.0°	179.8°
HD2	CD2	NE2	HE2	0.0°	0.0°

224931

PDB entries from 2024-09-11

PDB statistics

PDBj update info

Contact PDBj

numon