2GP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | doub | 1.48Å | 1.46Å | |
| P | O2P | sing | 1.61Å | 1.47Å | |
| P | O3P | sing | 1.61Å | 1.49Å | |
| P | O2' | sing | 1.61Å | 1.66Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.39Å | |
| O5' | HO5' | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.55Å | |
| C5' | H5'1 | sing | 1.09Å | 1.12Å | |
| C5' | H5'2 | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.54Å | 1.56Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C3' | O3' | sing | 1.43Å | 1.39Å | |
| C3' | C2' | sing | 1.55Å | 1.58Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.54Å | 1.59Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| C1' | N9 | sing | 1.46Å | 1.45Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| N9 | C8 | sing | 1.36Å | 1.40Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.30Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.10Å | |
| N7 | C5 | sing | 1.36Å | 1.42Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.42Å | |
| C5 | C4 | doub | 1.40Å | 1.36Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.20Å | |
| C6 | N1 | sing | 1.35Å | 1.38Å | |
| N1 | C2 | sing | 1.36Å | 1.36Å | |
| N1 | HN1 | sing | 0.97Å | 1.02Å | |
| C2 | N2 | sing | 1.37Å | 1.35Å | |
| C2 | N3 | doub | 1.31Å | 1.31Å | |
| N2 | HN21 | sing | 0.97Å | 1.02Å | |
| N2 | HN22 | sing | 0.97Å | 1.02Å | |
| N3 | C4 | sing | 1.34Å | 1.36Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 116.8° | 109.5° |
| O1P | P | O3P | 113.0° | 109.4° |
| O1P | P | O2' | 94.2° | 109.4° |
| O2P | P | O3P | 111.8° | 109.5° |
| O2P | P | O2' | 109.5° | 109.5° |
| P | O2P | HOP2 | 116.8° | 106.8° |
| O3P | P | O2' | 110.1° | 109.5° |
| P | O3P | HOP3 | 113.1° | 106.8° |
| P | O2' | C2' | 122.3° | 106.9° |
| C5' | O5' | HO5' | 116.2° | 106.8° |
| O5' | C5' | C4' | 116.1° | 109.5° |
| O5' | C5' | H5'1 | 109.8° | 109.5° |
| O5' | C5' | H5'2 | 109.8° | 109.5° |
| C4' | C5' | H5'1 | 109.8° | 109.5° |
| C4' | C5' | H5'2 | 109.8° | 109.5° |
| C5' | C4' | O4' | 109.8° | 110.4° |
| C5' | C4' | C3' | 110.0° | 110.5° |
| C5' | C4' | H4' | 106.6° | 110.3° |
| H5'1 | C5' | H5'2 | 100.4° | 109.4° |
| O4' | C4' | C3' | 101.2° | 104.8° |
| O4' | C4' | H4' | 114.7° | 110.4° |
| C4' | O4' | C1' | 111.3° | 105.3° |
| C3' | C4' | H4' | 114.6° | 110.4° |
| C4' | C3' | O3' | 112.1° | 110.5° |
| C4' | C3' | C2' | 103.0° | 104.1° |
| C4' | C3' | H3' | 112.4° | 110.5° |
| O4' | C1' | C2' | 107.5° | 104.8° |
| O4' | C1' | N9 | 111.6° | 110.3° |
| O4' | C1' | H1' | 110.4° | 110.4° |
| O3' | C3' | C2' | 110.6° | 110.5° |
| O3' | C3' | H3' | 105.1° | 110.4° |
| C3' | O3' | HO3' | 112.0° | 106.8° |
| C2' | C3' | H3' | 113.9° | 110.6° |
| C3' | C2' | O2' | 107.9° | 110.5° |
| C3' | C2' | C1' | 99.8° | 104.0° |
| C3' | C2' | H2' | 116.1° | 110.5° |
| O2' | C2' | C1' | 108.5° | 110.8° |
| O2' | C2' | H2' | 108.5° | 110.5° |
| C1' | C2' | H2' | 115.5° | 110.4° |
| C2' | C1' | N9 | 112.4° | 110.4° |
| C2' | C1' | H1' | 109.6° | 110.4° |
| N9 | C1' | H1' | 105.3° | 110.4° |
| C1' | N9 | C8 | 122.3° | 126.3° |
| C1' | N9 | C4 | 130.6° | 126.2° |
| C8 | N9 | C4 | 105.7° | 107.5° |
| N9 | C8 | N7 | 114.7° | 109.8° |
| N9 | C8 | H8 | 126.0° | 125.1° |
| N9 | C4 | C5 | 105.1° | 106.2° |
| N9 | C4 | N3 | 125.9° | 134.2° |
| N7 | C8 | H8 | 119.3° | 125.1° |
| C8 | N7 | C5 | 101.6° | 109.3° |
| N7 | C5 | C6 | 129.9° | 134.1° |
| N7 | C5 | C4 | 112.9° | 107.2° |
| C6 | C5 | C4 | 117.1° | 118.7° |
| C5 | C6 | O6 | 127.0° | 120.9° |
| C5 | C6 | N1 | 113.7° | 118.3° |
| C5 | C4 | N3 | 128.8° | 119.6° |
| O6 | C6 | N1 | 119.2° | 120.8° |
| C6 | N1 | C2 | 123.2° | 120.3° |
| C6 | N1 | HN1 | 119.3° | 119.8° |
| C2 | N1 | HN1 | 117.5° | 119.8° |
| N1 | C2 | N2 | 114.6° | 119.1° |
| N1 | C2 | N3 | 124.7° | 121.9° |
| N2 | C2 | N3 | 120.6° | 119.0° |
| C2 | N2 | HN21 | 114.6° | 120.1° |
| C2 | N2 | HN22 | 110.3° | 120.0° |
| C2 | N3 | C4 | 112.3° | 121.1° |
| HN21 | N2 | HN22 | 110.4° | 119.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 132.3° | 120.0° |
| O1P | P | O2P | O2' | 105.4° | 120.0° |
| O1P | P | O3P | O2' | 103.8° | 119.9° |
| O1P | P | O2P | HOP2 | 179.9° | 60.0° |
| O1P | P | O3P | HOP3 | 180.0° | 180.0° |
| O1P | P | O2' | C2' | 146.8° | 60.0° |
| O2P | P | O3P | O2' | 121.9° | 120.1° |
| O2P | P | O3P | HOP3 | 45.8° | 60.0° |
| O2P | P | O2' | C2' | 92.8° | 180.0° |
| O3P | P | O2P | HOP2 | 47.6° | 59.9° |
| O3P | P | O2' | C2' | 30.5° | 59.9° |
| O2' | P | O2P | HOP2 | 74.7° | 180.0° |
| O2' | P | O3P | HOP3 | 76.1° | 60.1° |
| P | O2' | C2' | C3' | 141.7° | 121.5° |
| P | O2' | C2' | C1' | 111.1° | 123.8° |
| P | O2' | C2' | H2' | 15.2° | 1.1° |
| O5' | C5' | C4' | H5'1 | 125.2° | 120.0° |
| O5' | C5' | C4' | H5'2 | 125.3° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 115.6° | 120.0° |
| O5' | C5' | C4' | O4' | 51.1° | 61.5° |
| O5' | C5' | C4' | C3' | 161.6° | 176.9° |
| O5' | C5' | C4' | H4' | 73.7° | 60.8° |
| HO5' | O5' | C5' | C4' | 179.9° | 180.0° |
| HO5' | O5' | C5' | H5'1 | 54.7° | 60.0° |
| HO5' | O5' | C5' | H5'2 | 54.8° | 60.0° |
| C4' | C5' | H5'1 | H5'2 | 115.6° | 120.0° |
| C5' | C4' | O4' | C3' | 116.2° | 118.9° |
| C5' | C4' | O4' | H4' | 120.0° | 122.2° |
| C5' | C4' | C3' | H4' | 120.1° | 122.3° |
| C5' | C4' | O4' | C1' | 150.2° | 159.5° |
| C5' | C4' | C3' | O3' | 83.7° | 98.3° |
| C5' | C4' | C3' | C2' | 157.5° | 143.0° |
| C5' | C4' | C3' | H3' | 34.5° | 24.2° |
| H5'1 | C5' | C4' | O4' | 74.1° | 178.5° |
| H5'1 | C5' | C4' | C3' | 36.3° | 63.1° |
| H5'1 | C5' | C4' | H4' | 161.1° | 59.2° |
| H5'2 | C5' | C4' | O4' | 176.4° | 58.5° |
| H5'2 | C5' | C4' | C3' | 73.2° | 56.9° |
| H5'2 | C5' | C4' | H4' | 51.6° | 179.2° |
| O4' | C4' | C3' | H4' | 123.9° | 118.9° |
| O4' | C4' | C3' | O3' | 160.3° | 142.8° |
| O4' | C4' | C3' | C2' | 41.5° | 24.1° |
| O4' | C4' | C3' | H3' | 81.5° | 94.7° |
| C4' | O4' | C1' | C2' | 12.6° | 40.5° |
| C4' | O4' | C1' | N9 | 136.3° | 159.4° |
| C4' | O4' | C1' | H1' | 106.9° | 78.4° |
| C3' | C4' | O4' | C1' | 34.1° | 40.5° |
| C4' | C3' | O3' | C2' | 114.3° | 114.7° |
| C4' | C3' | O3' | H3' | 122.4° | 122.6° |
| C4' | C3' | C2' | H3' | 122.0° | 118.7° |
| C4' | C3' | O3' | HO3' | 180.0° | 61.5° |
| C4' | C3' | C2' | O2' | 79.8° | 118.8° |
| C4' | C3' | C2' | C1' | 33.4° | 0.1° |
| C4' | C3' | C2' | H2' | 158.2° | 118.6° |
| H4' | C4' | O4' | C1' | 89.8° | 78.3° |
| H4' | C4' | C3' | O3' | 36.4° | 23.9° |
| H4' | C4' | C3' | C2' | 82.5° | 94.8° |
| H4' | C4' | C3' | H3' | 154.5° | 146.5° |
| O4' | C1' | C2' | C3' | 14.0° | 23.8° |
| O4' | C1' | C2' | O2' | 98.7° | 142.6° |
| O4' | C1' | C2' | N9 | 123.2° | 118.9° |
| O4' | C1' | C2' | H1' | 120.1° | 118.8° |
| O4' | C1' | C2' | H2' | 139.3° | 94.7° |
| O4' | C1' | N9 | H1' | 119.8° | 122.2° |
| O4' | C1' | N9 | C8 | 89.4° | 27.0° |
| O4' | C1' | N9 | C4 | 74.4° | 153.0° |
| O3' | C3' | C2' | H3' | 118.1° | 122.6° |
| O3' | C3' | C2' | O2' | 40.1° | 0.1° |
| O3' | C3' | C2' | C1' | 153.3° | 118.8° |
| O3' | C3' | C2' | H2' | 81.8° | 122.7° |
| C2' | C3' | O3' | HO3' | 65.7° | 176.2° |
| C3' | C2' | O2' | C1' | 107.3° | 114.7° |
| C3' | C2' | O2' | H2' | 126.5° | 122.6° |
| C3' | C2' | C1' | H2' | 125.2° | 118.6° |
| C3' | C2' | C1' | N9 | 109.2° | 142.7° |
| C3' | C2' | C1' | H1' | 134.1° | 95.0° |
| H3' | C3' | O3' | HO3' | 57.6° | 61.1° |
| H3' | C3' | C2' | O2' | 158.2° | 122.5° |
| H3' | C3' | C2' | C1' | 88.6° | 118.6° |
| H3' | C3' | C2' | H2' | 36.2° | 0.1° |
| O2' | C2' | C1' | H2' | 122.0° | 122.7° |
| O2' | C2' | C1' | N9 | 138.1° | 98.6° |
| O2' | C2' | C1' | H1' | 21.3° | 23.7° |
| C2' | C1' | N9 | H1' | 119.3° | 122.3° |
| C2' | C1' | N9 | C8 | 149.7° | 88.4° |
| C2' | C1' | N9 | C4 | 46.5° | 91.5° |
| H2' | C2' | C1' | N9 | 16.1° | 24.1° |
| H2' | C2' | C1' | H1' | 100.7° | 146.4° |
| C1' | N9 | C8 | C4 | 167.3° | 180.0° |
| C1' | N9 | C8 | N7 | 165.7° | 180.0° |
| C1' | N9 | C8 | H8 | 14.3° | 0.1° |
| C1' | N9 | C4 | C5 | 164.2° | 180.0° |
| C1' | N9 | C4 | N3 | 11.7° | 0.1° |
| H1' | C1' | N9 | C8 | 30.4° | 149.2° |
| H1' | C1' | N9 | C4 | 165.8° | 30.8° |
| N9 | C8 | N7 | H8 | 180.0° | 179.9° |
| N9 | C8 | N7 | C5 | 0.8° | 0.0° |
| C8 | N9 | C4 | C5 | 1.6° | 0.0° |
| C8 | N9 | C4 | N3 | 177.6° | 180.0° |
| C4 | N9 | C8 | N7 | 1.6° | 0.0° |
| C4 | N9 | C8 | H8 | 178.4° | 179.9° |
| N9 | C4 | C5 | N7 | 1.3° | 0.0° |
| N9 | C4 | C5 | C6 | 176.5° | 180.0° |
| N9 | C4 | C5 | N3 | 175.8° | 180.0° |
| N9 | C4 | N3 | C2 | 176.9° | 179.9° |
| C8 | N7 | C5 | C6 | 177.0° | 180.0° |
| C8 | N7 | C5 | C4 | 0.3° | 0.0° |
| H8 | C8 | N7 | C5 | 179.2° | 179.9° |
| N7 | C5 | C6 | C4 | 177.3° | 180.0° |
| N7 | C5 | C6 | O6 | 0.2° | 0.0° |
| N7 | C5 | C6 | N1 | 176.3° | 179.7° |
| N7 | C5 | C4 | N3 | 177.0° | 180.0° |
| C5 | C6 | O6 | N1 | 176.0° | 179.8° |
| C5 | C6 | N1 | C2 | 2.7° | 0.6° |
| C5 | C6 | N1 | HN1 | 177.3° | 180.0° |
| C6 | C5 | C4 | N3 | 0.7° | 0.0° |
| C4 | C5 | C6 | O6 | 177.1° | 180.0° |
| C4 | C5 | C6 | N1 | 0.9° | 0.3° |
| C5 | C4 | N3 | C2 | 1.9° | 0.0° |
| O6 | C6 | N1 | C2 | 179.2° | 179.7° |
| O6 | C6 | N1 | HN1 | 0.8° | 0.3° |
| C6 | N1 | C2 | HN1 | 180.0° | 179.4° |
| C6 | N1 | C2 | N2 | 172.9° | 179.7° |
| C6 | N1 | C2 | N3 | 4.5° | 0.7° |
| N1 | C2 | N2 | N3 | 177.5° | 179.7° |
| N1 | C2 | N2 | HN21 | 180.0° | 179.7° |
| N1 | C2 | N2 | HN22 | 54.7° | 0.5° |
| N1 | C2 | N3 | C4 | 3.7° | 0.4° |
| HN1 | N1 | C2 | N2 | 7.1° | 0.3° |
| HN1 | N1 | C2 | N3 | 175.5° | 180.0° |
| C2 | N2 | HN21 | HN22 | 125.3° | 179.8° |
| N2 | C2 | N3 | C4 | 173.5° | 180.0° |
| N3 | C2 | N2 | HN21 | 2.5° | 0.0° |
| N3 | C2 | N2 | HN22 | 127.8° | 179.8° |
