2GF
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2 | C2 | doub | 1.22Å | 1.37Å | |
| O4' | C4' | sing | 1.44Å | 1.36Å | |
| O4' | C1' | sing | 1.44Å | 1.39Å | |
| C4' | C5' | sing | 1.53Å | 1.52Å | |
| C4' | C3' | sing | 1.52Å | 1.46Å | |
| C5' | O5' | sing | 1.43Å | 1.35Å | |
| C2 | N3 | sing | 1.33Å | 1.43Å | |
| C2 | N1 | sing | 1.35Å | 1.39Å | |
| C1' | N1 | sing | 1.47Å | 1.42Å | |
| C1' | C2' | sing | 1.55Å | 1.51Å | |
| N3 | C4 | doub | 1.33Å | 1.36Å | |
| OP1 | P | sing | 1.61Å | 1.48Å | |
| N1 | C6 | sing | 1.36Å | 1.40Å | |
| P | O5' | sing | 1.61Å | 1.52Å | |
| P | OP2 | doub | 1.48Å | 1.49Å | |
| C3' | O3' | doub | 1.21Å | 1.22Å | |
| C3' | C2' | sing | 1.52Å | 1.48Å | |
| C4 | N4 | sing | 1.38Å | 1.43Å | |
| C4 | C5 | sing | 1.41Å | 1.43Å | |
| C6 | C5 | doub | 1.35Å | 1.38Å | |
| C5 | CL | sing | 1.74Å | 1.74Å | |
| OP1 | H1 | sing | 0.97Å | 0.95Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N4 | H42 | sing | 0.97Å | 1.00Å | |
| N4 | H41 | sing | 0.97Å | 1.00Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| P | OP3 | sing | 1.61Å | 14.60Å | |
| OP3 | H4 | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2 | C2 | N3 | 119.6° | 119.4° |
| O2 | C2 | N1 | 118.1° | 119.5° |
| C4' | O4' | C1' | 107.3° | 106.5° |
| O4' | C4' | C5' | 112.5° | 109.8° |
| O4' | C4' | C3' | 107.7° | 107.6° |
| O4' | C4' | H4' | 109.4° | 109.9° |
| O4' | C1' | N1 | 103.7° | 110.7° |
| O4' | C1' | C2' | 107.1° | 103.1° |
| O4' | C1' | H1' | 111.3° | 110.7° |
| C5' | C4' | C3' | 111.9° | 109.8° |
| C4' | C5' | O5' | 112.4° | 109.5° |
| C4' | C5' | H5'1 | 108.7° | 109.5° |
| C4' | C5' | H5'2 | 108.7° | 109.5° |
| C5' | C4' | H4' | 107.4° | 109.8° |
| C4' | C3' | O3' | 120.3° | 127.6° |
| C4' | C3' | C2' | 108.0° | 104.8° |
| C3' | C4' | H4' | 108.0° | 109.8° |
| C5' | O5' | P | 117.1° | 123.0° |
| O5' | C5' | H5'1 | 108.7° | 109.5° |
| O5' | C5' | H5'2 | 108.8° | 109.4° |
| N3 | C2 | N1 | 122.3° | 121.1° |
| C2 | N3 | C4 | 117.9° | 120.7° |
| C2 | N1 | C1' | 121.8° | 119.8° |
| C2 | N1 | C6 | 119.0° | 120.4° |
| N1 | C1' | C2' | 114.2° | 110.7° |
| C1' | N1 | C6 | 119.2° | 119.8° |
| N1 | C1' | H1' | 110.9° | 110.6° |
| C1' | C2' | C3' | 98.8° | 102.3° |
| C1' | C2' | H2'2 | 112.1° | 110.9° |
| C1' | C2' | H2' | 112.1° | 111.0° |
| C2' | C1' | H1' | 109.6° | 110.8° |
| N3 | C4 | N4 | 120.4° | 120.2° |
| N3 | C4 | C5 | 119.9° | 119.6° |
| OP1 | P | O5' | 117.1° | 109.5° |
| OP1 | P | OP2 | 105.2° | 109.5° |
| P | OP1 | H1 | 109.5° | 114.0° |
| OP1 | P | OP3 | 84.4° | 109.5° |
| N1 | C6 | C5 | 119.0° | 119.2° |
| N1 | C6 | H6 | 120.5° | 120.4° |
| O5' | P | OP2 | 117.7° | 109.5° |
| O5' | P | OP3 | 77.7° | 109.4° |
| OP2 | P | OP3 | 152.6° | 109.5° |
| O3' | C3' | C2' | 131.6° | 127.6° |
| C3' | C2' | H2'2 | 112.1° | 110.8° |
| C3' | C2' | H2' | 112.1° | 110.8° |
| N4 | C4 | C5 | 119.7° | 120.2° |
| C4 | N4 | H42 | 120.0° | 120.0° |
| C4 | N4 | H41 | 120.0° | 120.0° |
| C4 | C5 | C6 | 121.9° | 119.0° |
| C4 | C5 | CL | 118.9° | 120.5° |
| C6 | C5 | CL | 119.2° | 120.5° |
| C5 | C6 | H6 | 120.5° | 120.4° |
| H5'1 | C5' | H5'2 | 109.5° | 109.5° |
| H2'2 | C2' | H2' | 109.5° | 110.7° |
| H42 | N4 | H41 | 120.0° | 120.0° |
| P | OP3 | H4 | 90.0° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2 | C2 | N3 | N1 | 179.4° | 180.0° |
| O2 | C2 | N1 | C1' | 1.1° | 0.0° |
| O2 | C2 | N3 | C4 | 179.6° | 180.0° |
| O2 | C2 | N1 | C6 | 179.5° | 179.8° |
| O4' | C4' | C5' | C3' | 121.3° | 118.2° |
| O4' | C4' | C5' | H4' | 120.4° | 121.0° |
| O4' | C4' | C3' | H4' | 118.0° | 119.7° |
| O4' | C4' | C5' | O5' | 45.3° | 66.9° |
| C4' | O4' | C1' | N1 | 154.2° | 157.6° |
| C4' | O4' | C1' | C2' | 33.2° | 39.2° |
| O4' | C4' | C3' | O3' | 174.7° | 178.2° |
| O4' | C4' | C3' | C2' | 2.1° | 1.8° |
| O4' | C4' | C5' | H5'1 | 75.1° | 53.2° |
| O4' | C4' | C5' | H5'2 | 165.8° | 173.2° |
| C4' | O4' | C1' | H1' | 86.5° | 79.3° |
| C1' | O4' | C4' | C5' | 142.8° | 145.6° |
| C1' | O4' | C4' | C3' | 19.2° | 26.1° |
| O4' | C1' | N1 | C2 | 121.8° | 53.8° |
| O4' | C1' | N1 | C2' | 116.1° | 113.7° |
| O4' | C1' | N1 | H1' | 119.5° | 123.1° |
| O4' | C1' | C2' | H1' | 120.8° | 118.5° |
| O4' | C1' | N1 | C6 | 57.6° | 126.5° |
| O4' | C1' | C2' | C3' | 32.1° | 36.7° |
| C1' | O4' | C4' | H4' | 98.0° | 93.5° |
| O4' | C1' | C2' | H2'2 | 150.3° | 81.5° |
| O4' | C1' | C2' | H2' | 86.2° | 155.0° |
| C5' | C4' | C3' | H4' | 117.9° | 120.9° |
| C4' | C5' | O5' | H5'1 | 120.4° | 120.0° |
| C4' | C5' | O5' | H5'2 | 120.4° | 120.0° |
| C4' | C5' | O5' | P | 150.9° | 180.0° |
| C5' | C4' | C3' | O3' | 61.3° | 58.7° |
| C5' | C4' | C3' | C2' | 121.9° | 121.3° |
| C4' | C5' | H5'1 | H5'2 | 118.7° | 120.0° |
| C3' | C4' | C5' | O5' | 76.0° | 175.0° |
| C4' | C3' | C2' | C1' | 20.2° | 21.0° |
| C4' | C3' | O3' | C2' | 175.9° | 180.0° |
| C3' | C4' | C5' | H5'1 | 163.6° | 65.0° |
| C3' | C4' | C5' | H5'2 | 44.5° | 55.0° |
| C4' | C3' | C2' | H2'2 | 138.4° | 97.3° |
| C4' | C3' | C2' | H2' | 98.1° | 139.4° |
| C5' | O5' | P | OP1 | 48.9° | 65.1° |
| C5' | O5' | P | OP2 | 176.0° | 55.0° |
| O5' | C5' | H5'1 | H5'2 | 118.7° | 120.0° |
| O5' | C5' | C4' | H4' | 165.7° | 54.1° |
| C5' | O5' | P | OP3 | 28.2° | 175.0° |
| N3 | C2 | N1 | C1' | 179.5° | 180.0° |
| N3 | C2 | N1 | C6 | 0.0° | 0.3° |
| C2 | N3 | C4 | N4 | 178.9° | 180.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.0° |
| C2 | N1 | C1' | C6 | 179.4° | 179.7° |
| C2 | N1 | C1' | C2' | 122.1° | 59.8° |
| N1 | C2 | N3 | C4 | 0.1° | 0.0° |
| C2 | N1 | C6 | C5 | 0.1° | 0.5° |
| C2 | N1 | C1' | H1' | 2.3° | 176.9° |
| C2 | N1 | C6 | H6 | 179.9° | 179.7° |
| N1 | C1' | C2' | H1' | 125.1° | 123.1° |
| N1 | C1' | C2' | C3' | 146.2° | 155.2° |
| C1' | N1 | C6 | C5 | 179.3° | 179.8° |
| N1 | C1' | C2' | H2'2 | 95.6° | 36.9° |
| N1 | C1' | C2' | H2' | 27.9° | 86.6° |
| C1' | N1 | C6 | H6 | 0.7° | 0.0° |
| C2' | C1' | N1 | C6 | 58.5° | 119.9° |
| C1' | C2' | C3' | O3' | 156.1° | 159.0° |
| C1' | C2' | C3' | H2'2 | 118.2° | 118.3° |
| C1' | C2' | C3' | H2' | 118.3° | 118.4° |
| C1' | C2' | H2'2 | H2' | 125.0° | 123.6° |
| N3 | C4 | N4 | C5 | 179.0° | 180.0° |
| N3 | C4 | C5 | C6 | 0.1° | 0.3° |
| N3 | C4 | C5 | CL | 179.1° | 180.0° |
| N3 | C4 | N4 | H42 | 0.0° | 0.1° |
| N3 | C4 | N4 | H41 | 180.0° | 180.0° |
| OP1 | P | O5' | OP2 | 127.1° | 120.0° |
| OP1 | P | O5' | OP3 | 77.1° | 120.0° |
| OP1 | P | OP2 | OP3 | 107.9° | 120.0° |
| OP1 | P | OP3 | H4 | 90.0° | 60.0° |
| N1 | C6 | C5 | C4 | 0.2° | 0.5° |
| N1 | C6 | C5 | H6 | 180.0° | 179.8° |
| N1 | C6 | C5 | CL | 179.2° | 179.7° |
| C6 | N1 | C1' | H1' | 177.1° | 3.4° |
| O5' | P | OP2 | OP3 | 119.4° | 120.0° |
| O5' | P | OP1 | H1 | 132.9° | 60.0° |
| P | O5' | C5' | H5'1 | 30.5° | 59.9° |
| P | O5' | C5' | H5'2 | 88.7° | 60.0° |
| O5' | P | OP3 | H4 | 90.0° | 179.9° |
| OP2 | P | OP1 | H1 | 0.0° | 180.0° |
| OP2 | P | OP3 | H4 | 90.0° | 60.0° |
| O3' | C3' | C4' | H4' | 56.6° | 62.1° |
| O3' | C3' | C2' | H2'2 | 37.9° | 82.7° |
| O3' | C3' | C2' | H2' | 85.6° | 40.6° |
| C2' | C3' | C4' | H4' | 120.2° | 117.9° |
| C3' | C2' | H2'2 | H2' | 125.0° | 123.4° |
| C3' | C2' | C1' | H1' | 88.7° | 81.7° |
| N4 | C4 | C5 | C6 | 179.1° | 179.7° |
| N4 | C4 | C5 | CL | 1.9° | 0.0° |
| C4 | N4 | H42 | H41 | 180.0° | 179.9° |
| C4 | C5 | C6 | CL | 179.0° | 179.7° |
| C5 | C4 | N4 | H42 | 179.0° | 180.0° |
| C5 | C4 | N4 | H41 | 1.0° | 0.1° |
| C4 | C5 | C6 | H6 | 179.8° | 179.7° |
| CL | C5 | C6 | H6 | 0.8° | 0.0° |
| H1 | OP1 | P | OP3 | 153.9° | 60.0° |
| H5'1 | C5' | C4' | H4' | 45.3° | 174.2° |
| H5'2 | C5' | C4' | H4' | 73.8° | 65.8° |
| H2'2 | C2' | C1' | H1' | 29.5° | 160.0° |
| H2' | C2' | C1' | H1' | 153.0° | 36.5° |
