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SummaryGeometryRelated PDB entries

2GD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C13C04doub1.39Å1.33ÅAromatic
C13C14sing1.39Å1.45ÅAromatic
N01C02sing1.38Å1.40Å
C02N03doub1.32Å1.37ÅAromatic
C02N17sing1.32Å1.33ÅAromatic
N03C04sing1.33Å1.38ÅAromatic
C04C05sing1.48Å1.49Å
C05C06doub1.39Å1.37ÅAromatic
C05C11sing1.39Å1.35ÅAromatic
C06C07sing1.38Å1.41ÅAromatic
C07C08doub1.38Å1.35ÅAromatic
C08C09sing1.38Å1.35ÅAromatic
C09C11doub1.38Å1.39ÅAromatic
C11CL2sing1.74Å1.69Å
C14N15sing1.39Å1.42Å
C14N17doub1.33Å1.32ÅAromatic
N15C16sing1.46Å1.45Å
C09CL1sing1.74Å1.70Å
C13H1sing1.08Å1.08Å
N01H2sing0.97Å1.00Å
N01H3sing0.97Å1.00Å
C06H4sing1.08Å1.08Å
C07H5sing1.08Å1.08Å
C08H6sing1.08Å1.08Å
N15H13sing0.97Å1.00Å
C16H14sing1.09Å1.10Å
C16H15sing1.09Å1.10Å
C16H16sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C04C13C14118.4°118.4°
C13C04N03118.5°119.1°
C13C04C05124.5°120.5°
C04C13H1120.8°120.8°
C13C14N15119.7°120.5°
C13C14N17121.5°119.1°
C14C13H1120.8°120.8°
N01C02N03119.6°119.1°
N01C02N17119.0°119.1°
C02N01H2109.5°120.0°
C02N01H3109.4°120.0°
N03C02N17121.3°121.8°
C02N03C04120.7°120.8°
C02N17C14119.1°120.9°
N03C04C05116.3°120.5°
C04C05C06120.5°120.1°
C04C05C11119.0°120.1°
C06C05C11120.5°119.8°
C05C06C07118.9°119.9°
C05C06H4120.5°120.1°
C05C11C09119.2°119.8°
C05C11CL2121.5°120.1°
C06C07C08120.5°120.2°
C07C06H4120.5°120.0°
C06C07H5119.8°119.9°
C07C08C09118.9°120.3°
C08C07H5119.7°119.9°
C07C08H6120.5°119.8°
C08C09C11121.9°120.1°
C08C09CL1121.1°120.0°
C09C08H6120.6°119.9°
C09C11CL2119.3°120.1°
C11C09CL1117.0°120.0°
N15C14N17118.7°120.4°
C14N15C16122.5°120.0°
C14N15H13106.1°120.0°
C16N15H13106.1°120.0°
N15C16H14109.5°109.5°
N15C16H15109.5°109.5°
N15C16H16109.5°109.5°
H2N01H3109.5°119.9°
H14C16H15109.4°109.5°
H14C16H16109.5°109.4°
H15C16H16109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C04C13C14H1180.0°179.8°
C13C04N03C025.1°0.0°
C13C04N03C05170.8°180.0°
C13C04C05C0650.9°47.6°
C13C04C05C11131.4°132.2°
C04C13C14N15178.6°180.0°
C04C13C14N175.6°0.1°
C13C14N17C020.6°0.1°
C14C13C04N038.2°0.0°
C14C13C04C05178.1°180.0°
C13C14N15N17175.9°179.9°
C13C14N15C162.1°0.1°
C13C14N15H13123.9°180.0°
N01C02N03N17179.4°179.9°
N01C02N03C04178.2°180.0°
N01C02N17C14175.4°179.9°
C02N01H2H3120.0°179.9°
C02N03C04C05175.8°180.0°
N03C02N17C144.0°0.0°
N03C02N01H20.0°0.1°
N03C02N01H3120.0°180.0°
N17C02N03C041.2°0.0°
C02N17C14N15175.2°180.0°
N17C02N01H2179.5°180.0°
N17C02N01H359.4°0.1°
N03C04C05C06119.2°132.4°
N03C04C05C1158.4°47.8°
N03C04C13H1171.8°179.7°
C04C05C06C11177.6°179.7°
C04C05C06C07176.4°180.0°
C04C05C11C09177.1°179.7°
C04C05C11CL24.9°0.0°
C05C04C13H11.9°0.3°
C04C05C06H43.6°0.0°
C05C06C07H4180.0°180.0°
C05C06C07C081.3°0.1°
C06C05C11C090.6°0.6°
C06C05C11CL2177.4°179.8°
C05C06C07H5178.7°180.0°
C11C05C06C071.2°0.3°
C05C11C09C080.1°0.5°
C05C11C09CL2178.0°179.7°
C05C11C09CL1178.6°179.7°
C11C05C06H4178.8°179.7°
C06C07C08H5180.0°179.9°
C06C07C08C090.6°0.1°
C06C07C08H6179.3°180.0°
C07C08C09H6180.0°179.9°
C07C08C09C110.0°0.2°
C07C08C09CL1178.5°180.0°
C08C07C06H4178.7°179.9°
C08C09C11CL1178.6°179.8°
C08C09C11CL2178.1°179.8°
C09C08C07H5179.3°180.0°
C11C09C08H6180.0°179.7°
CL2C11C09CL13.4°0.0°
C14N15C16H13121.8°179.9°
N15C14C13H11.4°0.2°
C14N15C16H14180.0°59.9°
C14N15C16H1560.0°180.0°
C14N15C16H1660.0°60.0°
N17C14N15C16178.0°180.0°
N17C14C13H1174.4°179.7°
N17C14N15H1360.2°0.1°
N15C16H14H15120.0°120.1°
N15C16H14H16120.0°120.0°
N15C16H15H16120.0°120.0°
CL1C09C08H61.5°0.1°
H4C06C07H51.3°0.0°
H5C07C08H60.7°0.1°
H13N15C16H1458.2°120.0°
H13N15C16H15178.2°0.0°
H13N15C16H1661.8°120.0°
H14C16H15H16120.0°119.9°

238582

PDB entries from 2025-07-09

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