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Summary Geometry Related PDB entries

2FY

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	doub	1.36Å	1.39Å	Aromatic
C1	C10	sing	1.40Å	1.39Å	Aromatic
C2	C3	sing	1.39Å	1.39Å	Aromatic
C3	C4	doub	1.39Å	1.39Å	Aromatic
C3	O2	sing	1.36Å	1.36Å
C4	C5	sing	1.38Å	1.39Å	Aromatic
C5	C10	doub	1.41Å	1.39Å	Aromatic
C5	O8	sing	1.36Å	1.36Å
C6	O1	doub	1.21Å	1.23Å
C6	C9	sing	1.51Å	1.53Å
C6	C10	sing	1.47Å	1.53Å
C7	C9	sing	1.53Å	1.53Å
C1	H1	sing	1.08Å	1.08Å
C2	H2	sing	1.08Å	1.08Å
C4	H4	sing	1.08Å	1.08Å
O2	HA	sing	0.97Å	0.95Å
O8	H8	sing	0.97Å	0.95Å
C9	H91C	sing	1.09Å	1.10Å
C9	H92C	sing	1.09Å	1.10Å
C7	H71C	sing	1.09Å	1.10Å
C7	H72C	sing	1.09Å	1.10Å
C7	H73C	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	C10	120.0°	120.1°
C1	C2	C3	120.0°	120.4°
C2	C1	H1	120.0°	120.0°
C1	C2	H2	120.0°	119.8°
C1	C10	C5	120.0°	119.6°
C1	C10	C6	120.0°	120.2°
C10	C1	H1	120.0°	120.0°
C2	C3	C4	120.0°	120.3°
C2	C3	O2	120.0°	119.9°
C3	C2	H2	120.0°	119.8°
C4	C3	O2	120.0°	119.8°
C3	C4	C5	120.0°	119.9°
C3	C4	H4	120.0°	120.0°
C3	O2	HA	109.5°	114.0°
C4	C5	C10	120.0°	119.6°
C4	C5	O8	120.0°	120.2°
C5	C4	H4	120.0°	120.0°
C10	C5	O8	120.0°	120.2°
C5	C10	C6	120.0°	120.2°
C5	O8	H8	109.5°	114.0°
O1	C6	C9	120.4°	120.0°
O1	C6	C10	120.4°	120.0°
C9	C6	C10	119.2°	120.0°
C6	C9	C7	111.0°	109.5°
C6	C9	H91C	109.0°	109.5°
C6	C9	H92C	108.9°	109.5°
C7	C9	H91C	109.0°	109.4°
C7	C9	H92C	109.0°	109.5°
C9	C7	H71C	109.5°	109.5°
C9	C7	H72C	109.5°	109.5°
C9	C7	H73C	109.5°	109.5°
H91C	C9	H92C	110.0°	109.5°
H71C	C7	H72C	109.4°	109.4°
H71C	C7	H73C	109.5°	109.5°
H72C	C7	H73C	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	C10	H1	180.0°	179.9°
C1	C2	C3	H2	180.0°	179.9°
C1	C2	C3	C4	0.0°	0.1°
C1	C2	C3	O2	180.0°	179.9°
C2	C1	C10	C5	0.0°	0.1°
C2	C1	C10	C6	180.0°	179.7°
C10	C1	C2	C3	0.0°	0.1°
C1	C10	C5	C4	0.0°	0.0°
C1	C10	C5	C6	180.0°	179.8°
C1	C10	C5	O8	180.0°	179.8°
C1	C10	C6	O1	119.8°	179.7°
C1	C10	C6	C9	60.2°	0.2°
C10	C1	C2	H2	180.0°	180.0°
C2	C3	C4	O2	180.0°	180.0°
C2	C3	C4	C5	0.0°	0.0°
C3	C2	C1	H1	180.0°	180.0°
C2	C3	C4	H4	180.0°	180.0°
C2	C3	O2	HA	180.0°	90.0°
C3	C4	C5	H4	180.0°	180.0°
C3	C4	C5	C10	0.0°	0.0°
C3	C4	C5	O8	180.0°	179.7°
C4	C3	C2	H2	180.0°	180.0°
C4	C3	O2	HA	0.0°	90.0°
O2	C3	C4	C5	180.0°	180.0°
O2	C3	C2	H2	0.0°	0.0°
O2	C3	C4	H4	0.0°	0.0°
C4	C5	C10	O8	180.0°	179.7°
C4	C5	C10	C6	180.0°	179.7°
C4	C5	O8	H8	161.8°	89.8°
C5	C10	C6	O1	60.3°	0.0°
C5	C10	C6	C9	119.8°	180.0°
C5	C10	C1	H1	180.0°	180.0°
C10	C5	C4	H4	180.0°	180.0°
C10	C5	O8	H8	18.1°	90.0°
O8	C5	C10	C6	0.1°	0.0°
O8	C5	C4	H4	0.0°	0.3°
O1	C6	C9	C10	180.0°	180.0°
O1	C6	C9	C7	71.3°	0.0°
O1	C6	C9	H91C	48.7°	120.0°
O1	C6	C9	H92C	168.7°	120.0°
C6	C9	C7	H91C	120.0°	120.0°
C6	C9	C7	H92C	120.0°	120.0°
C6	C9	H91C	H92C	119.4°	120.1°
C6	C9	C7	H71C	180.0°	60.0°
C6	C9	C7	H72C	60.0°	180.0°
C6	C9	C7	H73C	60.0°	60.0°
C10	C6	C9	C7	108.7°	180.0°
C6	C10	C1	H1	0.0°	0.2°
C10	C6	C9	H91C	131.4°	60.1°
C10	C6	C9	H92C	11.3°	60.0°
C7	C9	H91C	H92C	119.4°	120.0°
C9	C7	H71C	H72C	120.0°	120.0°
C9	C7	H71C	H73C	120.0°	120.0°
C9	C7	H72C	H73C	120.0°	120.0°
H1	C1	C2	H2	0.0°	0.1°
H91C	C9	C7	H71C	60.0°	60.0°
H91C	C9	C7	H72C	180.0°	60.0°
H91C	C9	C7	H73C	60.0°	180.0°
H92C	C9	C7	H71C	60.0°	180.0°
H92C	C9	C7	H72C	60.0°	60.0°
H92C	C9	C7	H73C	180.0°	60.0°
H71C	C7	H72C	H73C	120.0°	120.0°

248636

PDB entries from 2026-02-04

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