Obsolete: 2FL
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O1' | C1' | sing | 1.43Å | 1.39Å | |
O2' | C2' | sing | 1.43Å | 1.41Å | |
C2' | C1' | sing | 1.53Å | 1.53Å | |
C2' | C3' | sing | 1.53Å | 1.54Å | |
C1' | O5' | sing | 1.43Å | 1.43Å | |
O5' | C5' | sing | 1.43Å | 1.43Å | |
C3' | O3' | sing | 1.43Å | 1.41Å | |
C3' | C4' | sing | 1.53Å | 1.54Å | |
C5' | C4' | sing | 1.53Å | 1.53Å | |
C5' | C6' | sing | 1.53Å | 1.49Å | |
C4' | O1 | sing | 1.43Å | 1.46Å | |
C6' | O6' | sing | 1.43Å | 1.42Å | |
O1 | C1 | sing | 1.43Å | 1.41Å | |
O5 | C1 | sing | 1.43Å | 1.40Å | |
O5 | C5 | sing | 1.43Å | 1.45Å | |
C6 | O6 | sing | 1.43Å | 1.41Å | |
C6 | C5 | sing | 1.53Å | 1.50Å | |
C1 | C2 | sing | 1.53Å | 1.50Å | |
C5 | C4 | sing | 1.53Å | 1.55Å | |
C2 | F2 | sing | 1.40Å | 1.40Å | |
C2 | C3 | sing | 1.53Å | 1.52Å | |
C4 | O4 | sing | 1.43Å | 1.43Å | |
C4 | C3 | sing | 1.53Å | 1.51Å | |
C3 | O3 | sing | 1.43Å | 1.44Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
C3 | H3 | sing | 1.09Å | 1.10Å | |
C4 | H4 | sing | 1.09Å | 1.10Å | |
C5 | H5 | sing | 1.09Å | 1.10Å | |
C6 | H61 | sing | 1.09Å | 1.10Å | |
C6 | H62 | sing | 1.09Å | 1.10Å | |
O3 | HO3 | sing | 0.97Å | 0.95Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å | |
O6 | HO6 | sing | 0.97Å | 0.95Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C6' | H6'1 | sing | 1.09Å | 1.10Å | |
C6' | H6'2 | sing | 1.09Å | 1.10Å | |
O1' | HO1' | sing | 0.97Å | 0.95Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
O6' | HO6' | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O1' | C1' | C2' | 108.1° | 109.5° |
O1' | C1' | O5' | 107.1° | 109.5° |
O1' | C1' | H1' | 111.5° | 109.5° |
C1' | O1' | HO1' | 109.5° | 114.0° |
O2' | C2' | C1' | 112.5° | 109.5° |
O2' | C2' | C3' | 108.6° | 109.5° |
O2' | C2' | H2' | 109.7° | 109.6° |
C2' | O2' | HO2' | 109.5° | 114.0° |
C1' | C2' | C3' | 110.1° | 109.2° |
C2' | C1' | O5' | 109.7° | 109.4° |
C2' | C1' | H1' | 109.5° | 109.5° |
C1' | C2' | H2' | 108.1° | 109.5° |
C2' | C3' | O3' | 108.9° | 109.5° |
C2' | C3' | C4' | 110.9° | 109.0° |
C3' | C2' | H2' | 107.9° | 109.5° |
C2' | C3' | H3' | 107.7° | 109.5° |
C1' | O5' | C5' | 113.2° | 114.1° |
O5' | C1' | H1' | 110.8° | 109.5° |
O5' | C5' | C4' | 110.6° | 109.4° |
O5' | C5' | C6' | 104.9° | 109.4° |
O5' | C5' | H5' | 110.3° | 109.5° |
O3' | C3' | C4' | 111.8° | 109.6° |
O3' | C3' | H3' | 109.6° | 109.6° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C3' | C4' | C5' | 112.4° | 109.2° |
C3' | C4' | O1 | 107.3° | 109.5° |
C4' | C3' | H3' | 107.8° | 109.6° |
C3' | C4' | H4' | 109.0° | 109.5° |
C4' | C5' | C6' | 112.6° | 109.5° |
C5' | C4' | O1 | 108.9° | 109.5° |
C5' | C4' | H4' | 109.2° | 109.6° |
C4' | C5' | H5' | 109.0° | 109.5° |
C5' | C6' | O6' | 110.3° | 109.5° |
C6' | C5' | H5' | 109.4° | 109.5° |
C5' | C6' | H6'1 | 109.3° | 109.4° |
C5' | C6' | H6'2 | 109.3° | 109.4° |
C4' | O1 | C1 | 117.6° | 114.0° |
O1 | C4' | H4' | 110.0° | 109.5° |
O6' | C6' | H6'1 | 109.2° | 109.5° |
O6' | C6' | H6'2 | 109.3° | 109.5° |
C6' | O6' | HO6' | 109.5° | 114.0° |
O1 | C1 | O5 | 108.1° | 109.5° |
O1 | C1 | C2 | 106.0° | 109.5° |
O1 | C1 | H1 | 111.3° | 109.5° |
C1 | O5 | C5 | 113.5° | 114.1° |
O5 | C1 | C2 | 110.0° | 109.4° |
O5 | C1 | H1 | 111.3° | 109.5° |
O5 | C5 | C6 | 108.9° | 109.5° |
O5 | C5 | C4 | 112.3° | 109.4° |
O5 | C5 | H5 | 108.5° | 109.5° |
O6 | C6 | C5 | 110.6° | 109.5° |
O6 | C6 | H61 | 109.2° | 109.4° |
O6 | C6 | H62 | 109.2° | 109.5° |
C6 | O6 | HO6 | 109.5° | 114.0° |
C6 | C5 | C4 | 111.8° | 109.5° |
C6 | C5 | H5 | 107.9° | 109.5° |
C5 | C6 | H61 | 109.2° | 109.5° |
C5 | C6 | H62 | 109.2° | 109.5° |
C1 | C2 | F2 | 106.6° | 109.5° |
C1 | C2 | C3 | 114.6° | 109.2° |
C2 | C1 | H1 | 109.9° | 109.5° |
C1 | C2 | H2 | 106.9° | 109.5° |
C5 | C4 | O4 | 111.1° | 109.5° |
C5 | C4 | C3 | 108.4° | 109.2° |
C5 | C4 | H4 | 108.9° | 109.6° |
C4 | C5 | H5 | 107.3° | 109.5° |
F2 | C2 | C3 | 113.4° | 109.5° |
F2 | C2 | H2 | 108.3° | 109.5° |
C2 | C3 | C4 | 105.5° | 109.0° |
C2 | C3 | O3 | 111.0° | 109.5° |
C3 | C2 | H2 | 106.7° | 109.6° |
C2 | C3 | H3 | 108.9° | 109.6° |
O4 | C4 | C3 | 108.5° | 109.5° |
O4 | C4 | H4 | 110.5° | 109.5° |
C4 | O4 | HO4 | 109.5° | 114.0° |
C4 | C3 | O3 | 112.2° | 109.5° |
C4 | C3 | H3 | 109.0° | 109.6° |
C3 | C4 | H4 | 109.4° | 109.5° |
O3 | C3 | H3 | 110.1° | 109.5° |
C3 | O3 | HO3 | 109.5° | 114.0° |
H61 | C6 | H62 | 109.5° | 109.5° |
H6'1 | C6' | H6'2 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O1' | C1' | C2' | O2' | 64.4° | 62.5° |
O1' | C1' | C2' | O5' | 116.5° | 120.0° |
O1' | C1' | C2' | H1' | 121.6° | 120.1° |
O1' | C1' | C2' | C3' | 174.4° | 177.6° |
O1' | C1' | O5' | H1' | 121.8° | 120.0° |
O1' | C1' | O5' | C5' | 178.5° | 178.9° |
O1' | C1' | C2' | H2' | 56.8° | 57.7° |
O2' | C2' | C1' | C3' | 121.2° | 119.9° |
O2' | C2' | C1' | H2' | 121.2° | 120.2° |
O2' | C2' | C3' | H2' | 118.7° | 120.2° |
O2' | C2' | C1' | O5' | 179.1° | 177.5° |
O2' | C2' | C3' | O3' | 62.8° | 63.3° |
O2' | C2' | C3' | C4' | 173.7° | 176.9° |
O2' | C2' | C1' | H1' | 57.2° | 57.5° |
O2' | C2' | C3' | H3' | 55.9° | 56.9° |
C1' | C2' | C3' | H2' | 117.7° | 119.9° |
C2' | C1' | O5' | H1' | 121.0° | 120.0° |
C2' | C1' | O5' | C5' | 64.3° | 61.1° |
C1' | C2' | C3' | O3' | 173.6° | 176.9° |
C1' | C2' | C3' | C4' | 50.2° | 57.0° |
C1' | C2' | C3' | H3' | 67.6° | 62.9° |
C2' | C1' | O1' | HO1' | 180.0° | 179.9° |
C1' | C2' | O2' | HO2' | 180.0° | 60.0° |
C3' | C2' | C1' | O5' | 57.9° | 57.6° |
C2' | C3' | O3' | C4' | 122.9° | 119.5° |
C2' | C3' | O3' | H3' | 117.6° | 120.2° |
C2' | C3' | C4' | H3' | 117.7° | 119.9° |
C2' | C3' | C4' | C5' | 47.4° | 57.0° |
C2' | C3' | C4' | O1 | 167.0° | 176.9° |
C3' | C2' | C1' | H1' | 64.0° | 62.3° |
C2' | C3' | C4' | H4' | 73.8° | 63.0° |
C3' | C2' | O2' | HO2' | 57.9° | 179.7° |
C2' | C3' | O3' | HO3' | 180.0° | 60.0° |
C1' | O5' | C5' | C4' | 60.4° | 61.2° |
C1' | O5' | C5' | C6' | 178.0° | 178.8° |
O5' | C1' | C2' | H2' | 59.7° | 62.3° |
C1' | O5' | C5' | H5' | 60.2° | 58.9° |
O5' | C1' | O1' | HO1' | 61.8° | 60.0° |
O5' | C5' | C4' | C3' | 51.1° | 57.6° |
O5' | C5' | C4' | C6' | 117.0° | 119.9° |
O5' | C5' | C4' | H5' | 121.4° | 120.0° |
O5' | C5' | C6' | H5' | 118.3° | 120.0° |
O5' | C5' | C4' | O1 | 169.9° | 177.5° |
O5' | C5' | C6' | O6' | 126.8° | 65.1° |
C5' | O5' | C1' | H1' | 56.7° | 58.8° |
O5' | C5' | C4' | H4' | 70.0° | 62.3° |
O5' | C5' | C6' | H6'1 | 113.1° | 175.0° |
O5' | C5' | C6' | H6'2 | 6.7° | 55.0° |
O3' | C3' | C4' | H3' | 120.5° | 120.3° |
O3' | C3' | C4' | C5' | 169.1° | 176.9° |
O3' | C3' | C4' | O1 | 71.2° | 63.2° |
O3' | C3' | C2' | H2' | 55.9° | 56.9° |
O3' | C3' | C4' | H4' | 47.9° | 56.8° |
C3' | C4' | C5' | O1 | 118.8° | 119.9° |
C3' | C4' | C5' | H4' | 121.1° | 120.0° |
C3' | C4' | C5' | C6' | 168.1° | 177.6° |
C3' | C4' | O1 | H4' | 118.5° | 120.1° |
C3' | C4' | O1 | C1 | 89.8° | 90.0° |
C4' | C3' | C2' | H2' | 67.5° | 62.9° |
C3' | C4' | C5' | H5' | 70.3° | 62.3° |
C4' | C3' | O3' | HO3' | 57.1° | 179.5° |
C4' | C5' | C6' | H5' | 121.3° | 120.1° |
C5' | C4' | O1 | H4' | 119.6° | 120.2° |
C4' | C5' | C6' | O6' | 112.9° | 175.0° |
C5' | C4' | O1 | C1 | 148.2° | 150.3° |
C5' | C4' | C3' | H3' | 70.4° | 62.9° |
C4' | C5' | C6' | H6'1 | 7.3° | 55.0° |
C4' | C5' | C6' | H6'2 | 127.0° | 65.0° |
C6' | C5' | C4' | O1 | 73.1° | 62.5° |
C5' | C6' | O6' | H6'1 | 120.1° | 119.9° |
C5' | C6' | O6' | H6'2 | 120.1° | 120.0° |
C6' | C5' | C4' | H4' | 47.0° | 57.6° |
C5' | C6' | H6'1 | H6'2 | 119.6° | 120.0° |
C5' | C6' | O6' | HO6' | 180.0° | 180.0° |
C4' | O1 | C1 | O5 | 80.2° | 65.1° |
C4' | O1 | C1 | C2 | 161.9° | 175.0° |
C4' | O1 | C1 | H1 | 42.4° | 54.9° |
O1 | C4' | C3' | H3' | 49.3° | 57.0° |
O1 | C4' | C5' | H5' | 48.5° | 57.5° |
O6' | C6' | C5' | H5' | 8.5° | 54.9° |
O6' | C6' | H6'1 | H6'2 | 119.6° | 120.1° |
O1 | C1 | O5 | C2 | 115.4° | 120.0° |
O1 | C1 | O5 | H1 | 122.5° | 120.0° |
O1 | C1 | O5 | C5 | 168.8° | 178.8° |
O1 | C1 | C2 | H1 | 120.4° | 120.0° |
O1 | C1 | C2 | F2 | 60.5° | 62.5° |
O1 | C1 | C2 | C3 | 173.2° | 177.6° |
O1 | C1 | C2 | H2 | 55.1° | 57.6° |
C1 | O1 | C4' | H4' | 28.7° | 30.1° |
C1 | O5 | C5 | C6 | 178.9° | 178.9° |
O5 | C1 | C2 | H1 | 123.0° | 120.0° |
C1 | O5 | C5 | C4 | 56.7° | 61.1° |
O5 | C1 | C2 | F2 | 177.2° | 177.5° |
O5 | C1 | C2 | C3 | 56.5° | 57.6° |
O5 | C1 | C2 | H2 | 61.5° | 62.4° |
C1 | O5 | C5 | H5 | 61.7° | 58.8° |
O5 | C5 | C6 | O6 | 160.8° | 65.1° |
O5 | C5 | C6 | C4 | 124.7° | 120.0° |
O5 | C5 | C6 | H5 | 117.6° | 120.0° |
C5 | O5 | C1 | C2 | 53.4° | 61.1° |
O5 | C5 | C4 | H5 | 119.1° | 120.0° |
O5 | C5 | C4 | O4 | 60.6° | 62.3° |
O5 | C5 | C4 | C3 | 58.5° | 57.6° |
C5 | O5 | C1 | H1 | 68.7° | 58.9° |
O5 | C5 | C4 | H4 | 177.5° | 177.5° |
O5 | C5 | C6 | H61 | 40.6° | 175.0° |
O5 | C5 | C6 | H62 | 79.0° | 54.9° |
O6 | C6 | C5 | H61 | 120.2° | 119.9° |
O6 | C6 | C5 | H62 | 120.2° | 120.0° |
O6 | C6 | C5 | C4 | 74.6° | 175.0° |
O6 | C6 | C5 | H5 | 43.2° | 54.9° |
O6 | C6 | H61 | H62 | 119.5° | 120.0° |
C6 | C5 | C4 | H5 | 118.1° | 120.0° |
C6 | C5 | C4 | O4 | 62.2° | 57.7° |
C6 | C5 | C4 | C3 | 178.7° | 177.6° |
C6 | C5 | C4 | H4 | 59.7° | 62.5° |
C5 | C6 | H61 | H62 | 119.5° | 120.0° |
C5 | C6 | O6 | HO6 | 180.0° | 180.0° |
C1 | C2 | F2 | C3 | 127.0° | 119.7° |
C1 | C2 | F2 | H2 | 114.7° | 120.1° |
C1 | C2 | C3 | H2 | 118.1° | 119.9° |
C1 | C2 | C3 | C4 | 58.6° | 57.0° |
C1 | C2 | C3 | O3 | 179.6° | 176.8° |
C1 | C2 | C3 | H3 | 58.3° | 63.0° |
C5 | C4 | C3 | C2 | 56.8° | 57.0° |
C5 | C4 | O4 | C3 | 119.1° | 119.7° |
C5 | C4 | O4 | H4 | 121.0° | 120.2° |
C5 | C4 | C3 | H4 | 118.7° | 120.0° |
C5 | C4 | C3 | O3 | 177.7° | 176.8° |
C5 | C4 | C3 | H3 | 60.0° | 63.0° |
C4 | C5 | C6 | H61 | 165.3° | 55.0° |
C4 | C5 | C6 | H62 | 45.6° | 65.0° |
C5 | C4 | O4 | HO4 | 180.0° | 179.7° |
F2 | C2 | C3 | H2 | 119.2° | 120.1° |
F2 | C2 | C3 | C4 | 178.7° | 176.9° |
F2 | C2 | C3 | O3 | 57.0° | 63.2° |
F2 | C2 | C1 | H1 | 59.9° | 57.5° |
F2 | C2 | C3 | H3 | 64.4° | 57.0° |
C2 | C3 | C4 | O4 | 64.0° | 62.9° |
C2 | C3 | C4 | O3 | 120.9° | 119.8° |
C2 | C3 | C4 | H3 | 116.8° | 119.9° |
C2 | C3 | O3 | H3 | 120.6° | 120.2° |
C3 | C2 | C1 | H1 | 66.5° | 62.4° |
C2 | C3 | C4 | H4 | 175.4° | 176.9° |
C2 | C3 | O3 | HO3 | 180.0° | 60.0° |
O4 | C4 | C3 | H4 | 120.6° | 120.2° |
O4 | C4 | C3 | O3 | 57.0° | 56.9° |
O4 | C4 | C3 | H3 | 179.2° | 177.1° |
O4 | C4 | C5 | H5 | 179.7° | 177.7° |
C4 | C3 | O3 | H3 | 121.6° | 120.3° |
C4 | C3 | C2 | H2 | 59.5° | 62.9° |
C3 | C4 | C5 | H5 | 60.6° | 62.4° |
C4 | C3 | O3 | HO3 | 62.3° | 179.5° |
C3 | C4 | O4 | HO4 | 60.9° | 60.0° |
O3 | C3 | C2 | H2 | 62.2° | 56.9° |
O3 | C3 | C4 | H4 | 63.6° | 63.2° |
H1 | C1 | C2 | H2 | 175.5° | 177.6° |
H2 | C2 | C3 | H3 | 176.5° | 177.1° |
H3 | C3 | C4 | H4 | 58.6° | 57.0° |
H3 | C3 | O3 | HO3 | 59.4° | 60.2° |
H4 | C4 | C5 | H5 | 58.4° | 57.6° |
H4 | C4 | O4 | HO4 | 59.0° | 60.1° |
H5 | C5 | C6 | H61 | 77.0° | 65.0° |
H5 | C5 | C6 | H62 | 163.4° | 175.0° |
H61 | C6 | O6 | HO6 | 59.9° | 60.1° |
H62 | C6 | O6 | HO6 | 59.8° | 59.9° |
H1' | C1' | C2' | H2' | 178.5° | 177.7° |
H1' | C1' | O1' | HO1' | 59.6° | 60.0° |
H2' | C2' | C3' | H3' | 174.7° | 177.1° |
H2' | C2' | O2' | HO2' | 59.7° | 60.2° |
H3' | C3' | C4' | H4' | 168.4° | 177.1° |
H3' | C3' | O3' | HO3' | 62.4° | 60.2° |
H4' | C4' | C5' | H5' | 168.6° | 177.7° |
H5' | C5' | C6' | H6'1 | 128.6° | 65.1° |
H5' | C5' | C6' | H6'2 | 111.7° | 174.9° |
H6'1 | C6' | O6' | HO6' | 59.9° | 60.0° |
H6'2 | C6' | O6' | HO6' | 59.8° | 60.0° |