2EK
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C11 | S1 | sing | 1.76Å | 1.70Å | Aromatic |
C11 | C12 | doub | 1.33Å | 1.37Å | Aromatic |
S1 | C10 | sing | 1.76Å | 1.70Å | Aromatic |
C12 | C9 | sing | 1.39Å | 1.43Å | Aromatic |
C10 | C9 | doub | 1.34Å | 1.39Å | Aromatic |
C9 | N2 | sing | 1.41Å | 1.43Å | |
N2 | C8 | sing | 1.35Å | 1.39Å | |
O | C8 | doub | 1.22Å | 1.23Å | |
C8 | N1 | sing | 1.35Å | 1.34Å | |
N1 | C7 | sing | 1.46Å | 1.46Å | |
C7 | C6 | sing | 1.53Å | 1.51Å | |
C6 | C5 | sing | 1.53Å | 1.51Å | |
C5 | N | sing | 1.47Å | 1.46Å | |
N | C4 | sing | 1.47Å | 1.44Å | |
S | C | sing | 1.76Å | 1.72Å | Aromatic |
S | C3 | sing | 1.76Å | 1.72Å | Aromatic |
CL | C | sing | 1.74Å | 1.72Å | |
C | C1 | doub | 1.33Å | 1.35Å | Aromatic |
C1 | C2 | sing | 1.39Å | 1.41Å | Aromatic |
C3 | C2 | doub | 1.33Å | 1.34Å | Aromatic |
C3 | CL1 | sing | 1.74Å | 1.70Å | |
C2 | C4 | sing | 1.51Å | 1.49Å | |
N2 | H1 | sing | 0.97Å | 1.00Å | |
C12 | H2 | sing | 1.08Å | 1.08Å | |
C11 | H3 | sing | 1.08Å | 1.08Å | |
C10 | H4 | sing | 1.08Å | 1.08Å | |
N1 | H5 | sing | 0.97Å | 1.00Å | |
C7 | H6 | sing | 1.09Å | 1.10Å | |
C7 | H7 | sing | 1.09Å | 1.10Å | |
C6 | H8 | sing | 1.09Å | 1.10Å | |
C6 | H9 | sing | 1.09Å | 1.10Å | |
C5 | H10 | sing | 1.09Å | 1.10Å | |
C5 | H11 | sing | 1.09Å | 1.10Å | |
N | H12 | sing | 1.01Å | 1.00Å | |
C4 | H14 | sing | 1.09Å | 1.10Å | |
C4 | H15 | sing | 1.09Å | 1.10Å | |
C1 | H16 | sing | 1.08Å | 1.08Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
S1 | C11 | C12 | 111.4° | 109.7° |
C11 | S1 | C10 | 93.1° | 91.0° |
S1 | C11 | H3 | 124.3° | 125.2° |
C11 | C12 | C9 | 113.1° | 114.9° |
C11 | C12 | H2 | 123.4° | 122.5° |
C12 | C11 | H3 | 124.3° | 125.1° |
S1 | C10 | C9 | 111.5° | 109.6° |
S1 | C10 | H4 | 124.3° | 125.2° |
C12 | C9 | C10 | 110.9° | 114.8° |
C12 | C9 | N2 | 124.2° | 122.6° |
C9 | C12 | H2 | 123.5° | 122.6° |
C10 | C9 | N2 | 124.9° | 122.6° |
C9 | C10 | H4 | 124.2° | 125.2° |
C9 | N2 | C8 | 126.8° | 120.0° |
C9 | N2 | H1 | 116.6° | 120.0° |
N2 | C8 | O | 121.7° | 120.0° |
N2 | C8 | N1 | 116.1° | 120.0° |
C8 | N2 | H1 | 116.6° | 120.0° |
O | C8 | N1 | 122.2° | 120.0° |
C8 | N1 | C7 | 121.4° | 120.0° |
C8 | N1 | H5 | 119.3° | 120.0° |
N1 | C7 | C6 | 112.2° | 109.5° |
C7 | N1 | H5 | 119.3° | 120.0° |
N1 | C7 | H6 | 108.8° | 109.5° |
N1 | C7 | H7 | 108.8° | 109.5° |
C7 | C6 | C5 | 113.0° | 109.5° |
C6 | C7 | H6 | 108.8° | 109.5° |
C6 | C7 | H7 | 108.8° | 109.4° |
C7 | C6 | H8 | 108.6° | 109.5° |
C7 | C6 | H9 | 108.5° | 109.4° |
C6 | C5 | N | 111.8° | 109.5° |
C5 | C6 | H8 | 108.6° | 109.5° |
C5 | C6 | H9 | 108.6° | 109.5° |
C6 | C5 | H10 | 108.9° | 109.5° |
C6 | C5 | H11 | 108.9° | 109.5° |
C5 | N | C4 | 119.0° | 111.0° |
N | C5 | H10 | 108.9° | 109.4° |
N | C5 | H11 | 108.9° | 109.4° |
C5 | N | H12 | 107.0° | 111.0° |
N | C4 | C2 | 116.3° | 109.5° |
C4 | N | H12 | 107.0° | 111.0° |
N | C4 | H14 | 107.7° | 109.5° |
N | C4 | H15 | 107.8° | 109.4° |
C | S | C3 | 88.6° | 91.0° |
S | C | CL | 120.1° | 125.2° |
S | C | C1 | 113.2° | 109.6° |
S | C3 | C2 | 114.9° | 109.6° |
S | C3 | CL1 | 116.4° | 125.2° |
CL | C | C1 | 126.7° | 125.2° |
C | C1 | C2 | 112.5° | 114.9° |
C | C1 | H16 | 123.7° | 122.6° |
C1 | C2 | C3 | 110.7° | 114.9° |
C1 | C2 | C4 | 126.8° | 122.5° |
C2 | C1 | H16 | 123.7° | 122.6° |
C2 | C3 | CL1 | 128.7° | 125.2° |
C3 | C2 | C4 | 122.5° | 122.5° |
C2 | C4 | H14 | 107.8° | 109.5° |
C2 | C4 | H15 | 107.7° | 109.5° |
H6 | C7 | H7 | 109.5° | 109.4° |
H8 | C6 | H9 | 109.5° | 109.4° |
H10 | C5 | H11 | 109.5° | 109.5° |
H14 | C4 | H15 | 109.4° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
S1 | C11 | C12 | H3 | 180.0° | 179.8° |
S1 | C11 | C12 | C9 | 0.5° | 0.0° |
C11 | S1 | C10 | C9 | 0.5° | 0.3° |
S1 | C11 | C12 | H2 | 179.6° | 180.0° |
C11 | S1 | C10 | H4 | 179.5° | 180.0° |
C12 | C11 | S1 | C10 | 0.6° | 0.2° |
C11 | C12 | C9 | H2 | 180.0° | 180.0° |
C11 | C12 | C9 | C10 | 0.1° | 0.3° |
C11 | C12 | C9 | N2 | 178.1° | 179.9° |
S1 | C10 | C9 | C12 | 0.3° | 0.4° |
S1 | C10 | C9 | H4 | 180.0° | 179.7° |
S1 | C10 | C9 | N2 | 177.6° | 179.9° |
C10 | S1 | C11 | H3 | 179.5° | 180.0° |
C12 | C9 | C10 | N2 | 178.0° | 179.7° |
C12 | C9 | N2 | C8 | 177.0° | 25.1° |
C12 | C9 | N2 | H1 | 3.0° | 154.8° |
C9 | C12 | C11 | H3 | 179.6° | 179.8° |
C12 | C9 | C10 | H4 | 179.7° | 179.9° |
C10 | C9 | N2 | C8 | 0.7° | 154.5° |
C10 | C9 | N2 | H1 | 179.3° | 25.5° |
C10 | C9 | C12 | H2 | 180.0° | 179.7° |
C9 | N2 | C8 | H1 | 180.0° | 179.9° |
C9 | N2 | C8 | O | 5.7° | 5.5° |
C9 | N2 | C8 | N1 | 177.3° | 174.9° |
N2 | C9 | C12 | H2 | 2.0° | 0.1° |
N2 | C9 | C10 | H4 | 2.4° | 0.3° |
N2 | C8 | O | N1 | 176.8° | 179.7° |
N2 | C8 | N1 | C7 | 174.2° | 179.7° |
N2 | C8 | N1 | H5 | 5.8° | 0.3° |
O | C8 | N1 | C7 | 8.8° | 0.0° |
O | C8 | N2 | H1 | 174.3° | 174.6° |
O | C8 | N1 | H5 | 171.1° | 180.0° |
C8 | N1 | C7 | H5 | 180.0° | 180.0° |
C8 | N1 | C7 | C6 | 168.8° | 180.0° |
N1 | C8 | N2 | H1 | 2.7° | 5.1° |
C8 | N1 | C7 | H6 | 70.8° | 59.9° |
C8 | N1 | C7 | H7 | 48.4° | 60.0° |
N1 | C7 | C6 | H6 | 120.4° | 120.1° |
N1 | C7 | C6 | H7 | 120.4° | 120.0° |
N1 | C7 | C6 | C5 | 74.4° | 180.0° |
N1 | C7 | H6 | H7 | 118.8° | 120.0° |
N1 | C7 | C6 | H8 | 46.2° | 59.9° |
N1 | C7 | C6 | H9 | 165.1° | 60.0° |
C7 | C6 | C5 | H8 | 120.5° | 120.1° |
C7 | C6 | C5 | H9 | 120.5° | 120.0° |
C7 | C6 | C5 | N | 167.5° | 180.0° |
C6 | C7 | N1 | H5 | 11.3° | 0.1° |
C6 | C7 | H6 | H7 | 118.8° | 119.9° |
C7 | C6 | H8 | H9 | 118.3° | 119.9° |
C7 | C6 | C5 | H10 | 72.2° | 60.0° |
C7 | C6 | C5 | H11 | 47.1° | 60.1° |
C6 | C5 | N | H10 | 120.3° | 120.0° |
C6 | C5 | N | H11 | 120.4° | 120.0° |
C6 | C5 | N | C4 | 166.1° | 180.0° |
C5 | C6 | C7 | H6 | 165.3° | 60.0° |
C5 | C6 | C7 | H7 | 46.0° | 60.0° |
C5 | C6 | H8 | H9 | 118.4° | 120.0° |
C6 | C5 | H10 | H11 | 118.9° | 120.0° |
C6 | C5 | N | H12 | 72.6° | 56.0° |
C5 | N | C4 | H12 | 121.3° | 124.0° |
C5 | N | C4 | C2 | 82.6° | 180.0° |
N | C5 | C6 | H8 | 46.9° | 60.0° |
N | C5 | C6 | H9 | 72.0° | 60.0° |
N | C5 | H10 | H11 | 118.9° | 120.0° |
C5 | N | C4 | H14 | 156.4° | 60.0° |
C5 | N | C4 | H15 | 38.4° | 60.0° |
N | C4 | C2 | C1 | 84.7° | 105.0° |
N | C4 | C2 | C3 | 94.8° | 75.3° |
N | C4 | C2 | H14 | 121.0° | 120.0° |
N | C4 | C2 | H15 | 121.0° | 119.9° |
C4 | N | C5 | H10 | 45.8° | 60.0° |
C4 | N | C5 | H11 | 73.5° | 60.0° |
N | C4 | H14 | H15 | 116.9° | 119.9° |
S | C | CL | C1 | 178.5° | 179.9° |
S | C | C1 | C2 | 0.5° | 0.1° |
C | S | C3 | C2 | 0.4° | 0.1° |
C | S | C3 | CL1 | 179.0° | 179.8° |
S | C | C1 | H16 | 179.6° | 179.9° |
C3 | S | C | CL | 178.2° | 180.0° |
C3 | S | C | C1 | 0.5° | 0.0° |
S | C3 | C2 | C1 | 0.3° | 0.3° |
S | C3 | C2 | CL1 | 179.4° | 180.0° |
S | C3 | C2 | C4 | 179.3° | 180.0° |
CL | C | C1 | C2 | 178.1° | 179.8° |
CL | C | C1 | H16 | 1.8° | 0.2° |
C | C1 | C2 | H16 | 180.0° | 180.0° |
C | C1 | C2 | C3 | 0.1° | 0.3° |
C | C1 | C2 | C4 | 179.7° | 180.0° |
C1 | C2 | C3 | C4 | 179.6° | 179.7° |
C1 | C2 | C3 | CL1 | 179.1° | 179.7° |
C1 | C2 | C4 | H14 | 36.3° | 15.0° |
C1 | C2 | C4 | H15 | 154.3° | 135.0° |
C3 | C2 | C4 | H14 | 144.2° | 164.7° |
C3 | C2 | C4 | H15 | 26.2° | 44.7° |
C3 | C2 | C1 | H16 | 179.9° | 179.8° |
CL1 | C3 | C2 | C4 | 1.3° | 0.0° |
C2 | C4 | N | H12 | 38.7° | 56.0° |
C2 | C4 | H14 | H15 | 116.9° | 120.0° |
C4 | C2 | C1 | H16 | 0.3° | 0.1° |
H2 | C12 | C11 | H3 | 0.4° | 0.1° |
H5 | N1 | C7 | H6 | 109.1° | 120.0° |
H5 | N1 | C7 | H7 | 131.6° | 120.0° |
H6 | C7 | C6 | H8 | 74.2° | 180.0° |
H6 | C7 | C6 | H9 | 44.7° | 60.1° |
H7 | C7 | C6 | H8 | 166.6° | 60.1° |
H7 | C7 | C6 | H9 | 74.5° | 180.0° |
H8 | C6 | C5 | H10 | 167.3° | 179.9° |
H8 | C6 | C5 | H11 | 73.4° | 60.0° |
H9 | C6 | C5 | H10 | 48.3° | 60.0° |
H9 | C6 | C5 | H11 | 167.6° | 180.0° |
H10 | C5 | N | H12 | 167.1° | 176.0° |
H11 | C5 | N | H12 | 47.8° | 64.0° |
H12 | N | C4 | H14 | 82.3° | 176.0° |
H12 | N | C4 | H15 | 159.7° | 64.0° |