Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2EK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C11S1sing1.76Å1.70ÅAromatic
C11C12doub1.33Å1.37ÅAromatic
S1C10sing1.76Å1.70ÅAromatic
C12C9sing1.39Å1.43ÅAromatic
C10C9doub1.34Å1.39ÅAromatic
C9N2sing1.41Å1.43Å
N2C8sing1.35Å1.39Å
OC8doub1.22Å1.23Å
C8N1sing1.35Å1.34Å
N1C7sing1.46Å1.46Å
C7C6sing1.53Å1.51Å
C6C5sing1.53Å1.51Å
C5Nsing1.47Å1.46Å
NC4sing1.47Å1.44Å
SCsing1.76Å1.72ÅAromatic
SC3sing1.76Å1.72ÅAromatic
CLCsing1.74Å1.72Å
CC1doub1.33Å1.35ÅAromatic
C1C2sing1.39Å1.41ÅAromatic
C3C2doub1.33Å1.34ÅAromatic
C3CL1sing1.74Å1.70Å
C2C4sing1.51Å1.49Å
N2H1sing0.97Å1.00Å
C12H2sing1.08Å1.08Å
C11H3sing1.08Å1.08Å
C10H4sing1.08Å1.08Å
N1H5sing0.97Å1.00Å
C7H6sing1.09Å1.10Å
C7H7sing1.09Å1.10Å
C6H8sing1.09Å1.10Å
C6H9sing1.09Å1.10Å
C5H10sing1.09Å1.10Å
C5H11sing1.09Å1.10Å
NH12sing1.01Å1.00Å
C4H14sing1.09Å1.10Å
C4H15sing1.09Å1.10Å
C1H16sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
S1C11C12111.4°109.7°
C11S1C1093.1°91.0°
S1C11H3124.3°125.2°
C11C12C9113.1°114.9°
C11C12H2123.4°122.5°
C12C11H3124.3°125.1°
S1C10C9111.5°109.6°
S1C10H4124.3°125.2°
C12C9C10110.9°114.8°
C12C9N2124.2°122.6°
C9C12H2123.5°122.6°
C10C9N2124.9°122.6°
C9C10H4124.2°125.2°
C9N2C8126.8°120.0°
C9N2H1116.6°120.0°
N2C8O121.7°120.0°
N2C8N1116.1°120.0°
C8N2H1116.6°120.0°
OC8N1122.2°120.0°
C8N1C7121.4°120.0°
C8N1H5119.3°120.0°
N1C7C6112.2°109.5°
C7N1H5119.3°120.0°
N1C7H6108.8°109.5°
N1C7H7108.8°109.5°
C7C6C5113.0°109.5°
C6C7H6108.8°109.5°
C6C7H7108.8°109.4°
C7C6H8108.6°109.5°
C7C6H9108.5°109.4°
C6C5N111.8°109.5°
C5C6H8108.6°109.5°
C5C6H9108.6°109.5°
C6C5H10108.9°109.5°
C6C5H11108.9°109.5°
C5NC4119.0°111.0°
NC5H10108.9°109.4°
NC5H11108.9°109.4°
C5NH12107.0°111.0°
NC4C2116.3°109.5°
C4NH12107.0°111.0°
NC4H14107.7°109.5°
NC4H15107.8°109.4°
CSC388.6°91.0°
SCCL120.1°125.2°
SCC1113.2°109.6°
SC3C2114.9°109.6°
SC3CL1116.4°125.2°
CLCC1126.7°125.2°
CC1C2112.5°114.9°
CC1H16123.7°122.6°
C1C2C3110.7°114.9°
C1C2C4126.8°122.5°
C2C1H16123.7°122.6°
C2C3CL1128.7°125.2°
C3C2C4122.5°122.5°
C2C4H14107.8°109.5°
C2C4H15107.7°109.5°
H6C7H7109.5°109.4°
H8C6H9109.5°109.4°
H10C5H11109.5°109.5°
H14C4H15109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
S1C11C12H3180.0°179.8°
S1C11C12C90.5°0.0°
C11S1C10C90.5°0.3°
S1C11C12H2179.6°180.0°
C11S1C10H4179.5°180.0°
C12C11S1C100.6°0.2°
C11C12C9H2180.0°180.0°
C11C12C9C100.1°0.3°
C11C12C9N2178.1°179.9°
S1C10C9C120.3°0.4°
S1C10C9H4180.0°179.7°
S1C10C9N2177.6°179.9°
C10S1C11H3179.5°180.0°
C12C9C10N2178.0°179.7°
C12C9N2C8177.0°25.1°
C12C9N2H13.0°154.8°
C9C12C11H3179.6°179.8°
C12C9C10H4179.7°179.9°
C10C9N2C80.7°154.5°
C10C9N2H1179.3°25.5°
C10C9C12H2180.0°179.7°
C9N2C8H1180.0°179.9°
C9N2C8O5.7°5.5°
C9N2C8N1177.3°174.9°
N2C9C12H22.0°0.1°
N2C9C10H42.4°0.3°
N2C8ON1176.8°179.7°
N2C8N1C7174.2°179.7°
N2C8N1H55.8°0.3°
OC8N1C78.8°0.0°
OC8N2H1174.3°174.6°
OC8N1H5171.1°180.0°
C8N1C7H5180.0°180.0°
C8N1C7C6168.8°180.0°
N1C8N2H12.7°5.1°
C8N1C7H670.8°59.9°
C8N1C7H748.4°60.0°
N1C7C6H6120.4°120.1°
N1C7C6H7120.4°120.0°
N1C7C6C574.4°180.0°
N1C7H6H7118.8°120.0°
N1C7C6H846.2°59.9°
N1C7C6H9165.1°60.0°
C7C6C5H8120.5°120.1°
C7C6C5H9120.5°120.0°
C7C6C5N167.5°180.0°
C6C7N1H511.3°0.1°
C6C7H6H7118.8°119.9°
C7C6H8H9118.3°119.9°
C7C6C5H1072.2°60.0°
C7C6C5H1147.1°60.1°
C6C5NH10120.3°120.0°
C6C5NH11120.4°120.0°
C6C5NC4166.1°180.0°
C5C6C7H6165.3°60.0°
C5C6C7H746.0°60.0°
C5C6H8H9118.4°120.0°
C6C5H10H11118.9°120.0°
C6C5NH1272.6°56.0°
C5NC4H12121.3°124.0°
C5NC4C282.6°180.0°
NC5C6H846.9°60.0°
NC5C6H972.0°60.0°
NC5H10H11118.9°120.0°
C5NC4H14156.4°60.0°
C5NC4H1538.4°60.0°
NC4C2C184.7°105.0°
NC4C2C394.8°75.3°
NC4C2H14121.0°120.0°
NC4C2H15121.0°119.9°
C4NC5H1045.8°60.0°
C4NC5H1173.5°60.0°
NC4H14H15116.9°119.9°
SCCLC1178.5°179.9°
SCC1C20.5°0.1°
CSC3C20.4°0.1°
CSC3CL1179.0°179.8°
SCC1H16179.6°179.9°
C3SCCL178.2°180.0°
C3SCC10.5°0.0°
SC3C2C10.3°0.3°
SC3C2CL1179.4°180.0°
SC3C2C4179.3°180.0°
CLCC1C2178.1°179.8°
CLCC1H161.8°0.2°
CC1C2H16180.0°180.0°
CC1C2C30.1°0.3°
CC1C2C4179.7°180.0°
C1C2C3C4179.6°179.7°
C1C2C3CL1179.1°179.7°
C1C2C4H1436.3°15.0°
C1C2C4H15154.3°135.0°
C3C2C4H14144.2°164.7°
C3C2C4H1526.2°44.7°
C3C2C1H16179.9°179.8°
CL1C3C2C41.3°0.0°
C2C4NH1238.7°56.0°
C2C4H14H15116.9°120.0°
C4C2C1H160.3°0.1°
H2C12C11H30.4°0.1°
H5N1C7H6109.1°120.0°
H5N1C7H7131.6°120.0°
H6C7C6H874.2°180.0°
H6C7C6H944.7°60.1°
H7C7C6H8166.6°60.1°
H7C7C6H974.5°180.0°
H8C6C5H10167.3°179.9°
H8C6C5H1173.4°60.0°
H9C6C5H1048.3°60.0°
H9C6C5H11167.6°180.0°
H10C5NH12167.1°176.0°
H11C5NH1247.8°64.0°
H12NC4H1482.3°176.0°
H12NC4H15159.7°64.0°

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon