English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

2E6

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O15	P13	doub	1.48Å	1.59Å
O12	P13	sing	1.61Å	1.60Å
O12	P9	sing	1.61Å	1.59Å
O11	P9	doub	1.48Å	1.60Å
P13	O16	sing	1.61Å	1.59Å
P13	O14	sing	1.61Å	1.49Å
O10	P9	sing	1.61Å	1.48Å
P9	O8	sing	1.61Å	1.59Å
O8	C7	sing	1.43Å	1.43Å
C3	N4	doub	1.32Å	1.35Å	Aromatic
C3	C2	sing	1.38Å	1.39Å	Aromatic
N4	C5	sing	1.32Å	1.36Å	Aromatic
C2	C1	doub	1.39Å	1.39Å	Aromatic
C5	C7	sing	1.51Å	1.53Å
C5	C6	doub	1.38Å	1.39Å	Aromatic
C1	C6	sing	1.39Å	1.40Å	Aromatic
C1	H1	sing	1.08Å	1.08Å
C2	H2	sing	1.08Å	1.08Å
C3	H3	sing	1.08Å	1.08Å
O14	H4	sing	0.97Å	0.95Å
O16	H5	sing	0.97Å	0.95Å
O10	H6	sing	0.97Å	0.95Å
C7	H7	sing	1.09Å	1.10Å
C7	H8	sing	1.09Å	1.10Å
C6	H9	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O15	P13	O12	107.5°	109.4°
O15	P13	O16	108.8°	109.5°
O15	P13	O14	109.7°	109.4°
P13	O12	P9	122.2°	134.0°
O12	P13	O16	107.2°	109.5°
O12	P13	O14	114.4°	109.5°
O12	P9	O11	112.7°	109.5°
O12	P9	O10	106.8°	109.5°
O12	P9	O8	110.0°	109.5°
O11	P9	O10	109.4°	109.4°
O11	P9	O8	109.4°	109.4°
O16	P13	O14	109.2°	109.5°
P13	O16	H5	109.5°	114.0°
P13	O14	H4	109.5°	113.9°
O10	P9	O8	108.6°	109.4°
P9	O10	H6	109.5°	114.0°
P9	O8	C7	122.3°	123.0°
O8	C7	C5	108.9°	109.4°
O8	C7	H7	109.7°	109.5°
O8	C7	H8	109.6°	109.5°
N4	C3	C2	120.9°	120.7°
C3	N4	C5	121.5°	121.7°
N4	C3	H3	119.5°	119.6°
C3	C2	C1	118.7°	119.2°
C3	C2	H2	120.7°	120.4°
C2	C3	H3	119.6°	119.7°
N4	C5	C7	120.3°	119.6°
N4	C5	C6	119.4°	120.8°
C2	C1	C6	119.5°	118.5°
C2	C1	H1	120.2°	120.8°
C1	C2	H2	120.6°	120.5°
C7	C5	C6	120.2°	119.6°
C5	C7	H7	109.6°	109.5°
C5	C7	H8	109.6°	109.5°
C5	C6	C1	119.9°	119.1°
C5	C6	H9	120.1°	120.4°
C6	C1	H1	120.2°	120.8°
C1	C6	H9	120.1°	120.5°
H7	C7	H8	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O15	P13	O12	O16	116.8°	120.0°
O15	P13	O12	O14	122.0°	119.9°
O15	P13	O12	P9	109.4°	40.0°
O15	P13	O16	O14	119.7°	120.0°
O15	P13	O14	H4	0.0°	180.0°
O15	P13	O16	H5	0.0°	60.0°
P13	O12	P9	O11	55.2°	45.0°
O12	P13	O16	O14	124.4°	120.0°
P13	O12	P9	O10	175.3°	75.0°
P13	O12	P9	O8	67.1°	165.0°
O12	P13	O14	H4	120.8°	60.1°
O12	P13	O16	H5	115.9°	180.0°
O12	P9	O11	O10	118.6°	120.0°
O12	P9	O11	O8	122.7°	120.0°
P9	O12	P13	O16	133.8°	160.0°
P9	O12	P13	O14	12.6°	80.0°
O12	P9	O10	O8	118.6°	120.0°
O12	P9	O8	C7	85.7°	175.0°
O12	P9	O10	H6	122.2°	60.0°
O11	P9	O10	O8	119.3°	119.9°
O11	P9	O8	C7	150.0°	55.0°
O11	P9	O10	H6	0.0°	180.0°
O16	P13	O14	H4	119.1°	60.0°
O14	P13	O16	H5	119.6°	60.0°
O10	P9	O8	C7	30.8°	65.0°
P9	O8	C7	C5	78.3°	180.0°
O8	P9	O10	H6	119.2°	60.1°
P9	O8	C7	H7	41.6°	60.0°
P9	O8	C7	H8	161.8°	60.0°
O8	C7	C5	N4	111.9°	179.4°
O8	C7	C5	H7	119.9°	120.0°
O8	C7	C5	H8	119.9°	120.0°
O8	C7	C5	C6	69.2°	0.0°
O8	C7	H7	H8	120.3°	120.0°
N4	C3	C2	H3	180.0°	180.0°
N4	C3	C2	C1	0.5°	0.0°
C3	N4	C5	C7	179.6°	180.0°
C3	N4	C5	C6	0.6°	0.6°
N4	C3	C2	H2	179.5°	179.9°
C2	C3	N4	C5	0.0°	0.3°
C3	C2	C1	H2	180.0°	179.9°
C3	C2	C1	C6	0.3°	0.0°
C3	C2	C1	H1	179.7°	179.8°
N4	C5	C7	C6	178.9°	179.4°
N4	C5	C6	C1	0.9°	0.6°
C5	N4	C3	H3	179.9°	179.7°
N4	C5	C7	H7	8.1°	59.4°
N4	C5	C7	H8	128.2°	60.6°
N4	C5	C6	H9	179.2°	179.4°
C2	C1	C6	C5	0.4°	0.3°
C2	C1	C6	H1	180.0°	179.8°
C1	C2	C3	H3	179.5°	180.0°
C2	C1	C6	H9	179.6°	179.7°
C7	C5	C6	C1	179.8°	180.0°
C5	C7	H7	H8	120.3°	120.0°
C7	C5	C6	H9	0.2°	0.0°
C5	C6	C1	H9	180.0°	179.9°
C5	C6	C1	H1	179.6°	180.0°
C6	C5	C7	H7	170.9°	120.0°
C6	C5	C7	H8	50.7°	120.0°
C6	C1	C2	H2	179.7°	179.9°
H1	C1	C2	H2	0.3°	0.3°
H1	C1	C6	H9	0.4°	0.1°
H2	C2	C3	H3	0.5°	0.1°

251801

PDB entries from 2026-04-08

PDB statistics

PDBj update info

Contact PDBj

numon