2DM

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	OP1	doub	1.50Å	1.48Å
P	OP2	sing	1.62Å	1.48Å
P	O1'	sing	1.62Å	1.62Å
P	OP3	sing	1.62Å	20.81Å
OP2	HOP2	sing	0.98Å	0.95Å
O1'	C1'	sing	1.42Å	1.42Å
O3'	C2'	sing	1.43Å	1.43Å
O3'	HO3'	sing	0.97Å	0.95Å
C1'	C2'	sing	1.52Å	1.54Å
C1'	H1'1	sing	1.09Å	1.09Å
C1'	H1'2	sing	1.09Å	1.09Å
C2'	C3'	sing	1.52Å	1.54Å
C2'	H2'	sing	1.10Å	1.08Å
C3'	O4'	sing	1.42Å	1.43Å
C3'	H3'1	sing	1.10Å	1.09Å
C3'	H3'2	sing	1.09Å	1.09Å
O4'	C4'	sing	1.42Å	1.43Å
C4'	C1	sing	1.50Å	1.52Å
C4'	H4'1	sing	1.10Å	1.09Å
C4'	H4'2	sing	1.10Å	1.08Å
C1	C2	doub	1.39Å	1.41Å	Aromatic
C1	C11	sing	1.40Å	1.42Å	Aromatic
C2	C3	sing	1.39Å	1.40Å	Aromatic
C2	H2	sing	1.09Å	1.08Å
C11	C15	doub	1.41Å	1.41Å	Aromatic
C11	C10	sing	1.40Å	1.41Å	Aromatic
C15	C12	sing	1.41Å	1.41Å	Aromatic
C15	C16	sing	1.42Å	1.41Å	Aromatic
C3	C12	doub	1.40Å	1.40Å	Aromatic
C3	H3	sing	1.09Å	1.08Å
C12	C4	sing	1.40Å	1.41Å	Aromatic
C16	C14	doub	1.41Å	1.41Å	Aromatic
C16	C13	sing	1.41Å	1.41Å	Aromatic
C5	C4	doub	1.40Å	1.42Å	Aromatic
C5	C13	sing	1.40Å	1.41Å	Aromatic
C5	H5	sing	1.09Å	1.10Å
C4	H4	sing	1.09Å	1.09Å
C10	C9	doub	1.40Å	1.41Å	Aromatic
C10	H10	sing	1.09Å	1.08Å
C14	C9	sing	1.40Å	1.40Å	Aromatic
C14	C8	sing	1.40Å	1.40Å	Aromatic
C9	H9	sing	1.09Å	1.08Å
C8	C7	doub	1.39Å	1.40Å	Aromatic
C8	H8	sing	1.09Å	1.08Å
C7	C6	sing	1.39Å	1.40Å	Aromatic
C7	H7	sing	1.09Å	1.07Å
C6	C13	doub	1.40Å	1.40Å	Aromatic
C6	H6	sing	1.09Å	1.08Å
OP3	HOP3	sing	0.98Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP1	P	OP2	119.2°	115.3°
OP1	P	O1'	108.7°	115.1°
OP1	P	OP3	66.0°	115.0°
OP2	P	O1'	108.0°	103.8°
OP2	P	OP3	126.6°	103.3°
P	OP2	HOP2	119.2°	119.0°
O1'	P	OP3	120.5°	102.7°
P	O1'	C1'	121.6°	118.3°
P	OP3	HOP3	66.0°	119.0°
O1'	C1'	C2'	115.3°	109.9°
O1'	C1'	H1'1	110.7°	108.0°
O1'	C1'	H1'2	107.7°	107.3°
C2'	O3'	HO3'	113.7°	106.3°
O3'	C2'	C1'	113.7°	108.7°
O3'	C2'	C3'	112.5°	108.0°
O3'	C2'	H2'	102.5°	106.7°
C2'	C1'	H1'1	107.2°	111.6°
C2'	C1'	H1'2	108.3°	111.2°
C1'	C2'	C3'	114.7°	111.5°
C1'	C2'	H2'	103.9°	111.2°
H1'1	C1'	H1'2	107.3°	108.8°
C3'	C2'	H2'	108.3°	110.6°
C2'	C3'	O4'	115.2°	108.9°
C2'	C3'	H3'1	108.0°	111.2°
C2'	C3'	H3'2	110.2°	111.1°
O4'	C3'	H3'1	108.5°	107.9°
O4'	C3'	H3'2	110.6°	108.0°
C3'	O4'	C4'	118.7°	111.6°
H3'1	C3'	H3'2	103.6°	109.5°
O4'	C4'	C1	113.4°	109.2°
O4'	C4'	H4'1	109.3°	108.9°
O4'	C4'	H4'2	112.7°	109.0°
C1	C4'	H4'1	109.7°	111.1°
C1	C4'	H4'2	103.3°	110.9°
C4'	C1	C2	120.0°	117.4°
C4'	C1	C11	120.2°	122.1°
H4'1	C4'	H4'2	108.2°	107.8°
C2	C1	C11	119.7°	120.6°
C1	C2	C3	120.5°	120.2°
C1	C2	H2	121.0°	120.6°
C1	C11	C15	119.4°	119.3°
C1	C11	C10	121.7°	121.4°
C3	C2	H2	118.4°	119.2°
C2	C3	C12	120.1°	120.6°
C2	C3	H3	119.2°	118.8°
C15	C11	C10	118.9°	119.2°
C11	C15	C12	120.3°	120.0°
C11	C15	C16	120.4°	120.0°
C11	C10	C9	120.6°	120.8°
C11	C10	H10	121.7°	121.5°
C12	C15	C16	119.2°	120.0°
C15	C12	C3	119.9°	119.3°
C15	C12	C4	120.7°	119.3°
C15	C16	C14	120.0°	120.0°
C15	C16	C13	120.1°	120.0°
C12	C3	H3	120.7°	120.6°
C3	C12	C4	119.3°	121.4°
C12	C4	C5	120.3°	120.8°
C12	C4	H4	113.2°	120.5°
C14	C16	C13	119.9°	120.0°
C16	C14	C9	119.8°	119.2°
C16	C14	C8	120.3°	119.3°
C16	C13	C5	121.1°	119.3°
C16	C13	C6	119.1°	119.3°
C4	C5	C13	118.3°	120.7°
C4	C5	H5	125.7°	118.7°
C5	C4	H4	126.5°	118.7°
C13	C5	H5	115.9°	120.6°
C5	C13	C6	119.8°	121.4°
C9	C10	H10	117.8°	117.8°
C10	C9	C14	120.2°	120.8°
C10	C9	H9	120.6°	118.7°
C9	C14	C8	119.9°	121.5°
C14	C9	H9	119.1°	120.5°
C14	C8	C7	119.5°	120.6°
C14	C8	H8	120.7°	120.6°
C7	C8	H8	119.8°	118.8°
C8	C7	C6	120.1°	120.2°
C8	C7	H7	121.5°	119.9°
C6	C7	H7	118.4°	119.8°
C7	C6	C13	120.7°	120.6°
C7	C6	H6	118.4°	118.8°
C13	C6	H6	120.9°	120.6°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP1	P	OP2	O1'	124.5°	126.8°
OP1	P	OP2	OP3	80.5°	126.3°
OP1	P	O1'	OP3	72.6°	125.7°
OP1	P	OP2	HOP2	180.0°	48.8°
OP1	P	O1'	C1'	154.3°	180.0°
OP1	P	OP3	HOP3	180.0°	48.0°
OP2	P	O1'	OP3	156.8°	107.4°
OP2	P	O1'	C1'	75.1°	53.1°
OP2	P	OP3	HOP3	70.5°	78.5°
O1'	P	OP2	HOP2	55.5°	175.6°
P	O1'	C1'	C2'	162.2°	180.0°
P	O1'	C1'	H1'1	40.3°	58.1°
P	O1'	C1'	H1'2	76.7°	59.1°
O1'	P	OP3	HOP3	81.7°	173.8°
OP3	P	OP2	HOP2	99.5°	77.5°
OP3	P	O1'	C1'	81.7°	54.3°
O1'	C1'	C2'	O3'	113.7°	60.8°
O1'	C1'	C2'	H1'1	123.8°	119.8°
O1'	C1'	C2'	H1'2	120.7°	118.6°
O1'	C1'	H1'1	H1'2	117.3°	116.1°
O1'	C1'	C2'	C3'	17.7°	179.7°
O1'	C1'	C2'	H2'	135.7°	56.3°
O3'	C2'	C1'	C3'	131.4°	118.9°
O3'	C2'	C1'	H2'	110.6°	117.2°
O3'	C2'	C1'	H1'1	10.0°	58.9°
O3'	C2'	C1'	H1'2	125.6°	179.4°
O3'	C2'	C3'	H2'	112.6°	116.4°
O3'	C2'	C3'	O4'	158.0°	61.9°
O3'	C2'	C3'	H3'1	80.5°	179.3°
O3'	C2'	C3'	H3'2	31.9°	57.0°
HO3'	O3'	C2'	C1'	180.0°	176.3°
HO3'	O3'	C2'	C3'	47.5°	55.3°
HO3'	O3'	C2'	H2'	68.6°	63.7°
C2'	C1'	H1'1	H1'2	116.2°	123.0°
C1'	C2'	C3'	H2'	115.5°	124.2°
C1'	C2'	C3'	O4'	70.0°	178.8°
C1'	C2'	C3'	H3'1	51.4°	60.0°
C1'	C2'	C3'	H3'2	163.9°	62.3°
H1'1	C1'	C2'	C3'	141.5°	60.0°
H1'1	C1'	C2'	H2'	100.5°	176.1°
H1'2	C1'	C2'	C3'	103.0°	61.7°
H1'2	C1'	C2'	H2'	15.0°	62.2°
C2'	C3'	O4'	H3'1	121.2°	120.8°
C2'	C3'	O4'	H3'2	125.9°	120.8°
C2'	C3'	H3'1	H3'2	116.9°	123.2°
C2'	C3'	O4'	C4'	47.7°	179.1°
H2'	C2'	C3'	O4'	45.4°	54.6°
H2'	C2'	C3'	H3'1	166.9°	64.2°
H2'	C2'	C3'	H3'2	80.6°	173.5°
O4'	C3'	H3'1	H3'2	117.6°	117.4°
C3'	O4'	C4'	C1	163.9°	180.0°
C3'	O4'	C4'	H4'1	73.4°	58.6°
C3'	O4'	C4'	H4'2	47.0°	58.8°
H3'1	C3'	O4'	C4'	168.9°	60.0°
H3'2	C3'	O4'	C4'	78.1°	58.3°
O4'	C4'	C1	H4'1	122.6°	120.1°
O4'	C4'	C1	H4'2	122.3°	120.1°
O4'	C4'	H4'1	H4'2	123.1°	118.1°
O4'	C4'	C1	C2	5.6°	90.0°
O4'	C4'	C1	C11	178.6°	90.0°
C1	C4'	H4'1	H4'2	112.0°	121.7°
C4'	C1	C2	C11	175.9°	180.0°
C4'	C1	C2	C3	173.4°	180.0°
C4'	C1	C2	H2	6.3°	0.1°
C4'	C1	C11	C15	175.7°	180.0°
C4'	C1	C11	C10	4.8°	0.1°
H4'1	C4'	C1	C2	128.1°	30.1°
H4'1	C4'	C1	C11	56.0°	149.9°
H4'2	C4'	C1	C2	116.7°	149.9°
H4'2	C4'	C1	C11	59.1°	30.1°
C1	C2	C3	H2	179.8°	180.0°
C2	C1	C11	C15	0.2°	0.1°
C2	C1	C11	C10	179.4°	180.0°
C1	C2	C3	C12	2.3°	0.0°
C1	C2	C3	H3	178.9°	179.9°
C11	C1	C2	C3	2.4°	0.0°
C11	C1	C2	H2	177.8°	180.0°
C1	C11	C15	C10	179.6°	179.9°
C1	C11	C15	C12	2.2°	0.0°
C1	C11	C15	C16	178.4°	180.0°
C1	C11	C10	C9	179.2°	180.0°
C1	C11	C10	H10	0.2°	0.1°
C2	C3	C12	C15	0.1°	0.1°
C2	C3	C12	H3	178.8°	179.9°
C2	C3	C12	C4	179.7°	180.0°
H2	C2	C3	C12	178.0°	179.9°
H2	C2	C3	H3	0.9°	0.0°
C11	C15	C12	C16	179.4°	180.0°
C11	C15	C12	C3	2.3°	0.1°
C11	C15	C12	C4	178.1°	180.0°
C11	C15	C16	C14	1.7°	0.0°
C11	C15	C16	C13	177.2°	180.0°
C15	C11	C10	C9	0.4°	0.1°
C15	C11	C10	H10	179.8°	180.0°
C10	C11	C15	C12	178.2°	179.9°
C10	C11	C15	C16	1.2°	0.0°
C11	C10	C9	H10	179.4°	179.9°
C11	C10	C9	C14	0.2°	0.0°
C11	C10	C9	H9	178.3°	179.9°
C15	C12	C3	C4	179.5°	179.9°
C15	C12	C3	H3	178.7°	180.0°
C12	C15	C16	C14	177.7°	180.0°
C12	C15	C16	C13	3.4°	0.0°
C15	C12	C4	C5	5.3°	0.0°
C15	C12	C4	H4	174.7°	179.9°
C16	C15	C12	C3	178.3°	180.0°
C16	C15	C12	C4	1.3°	0.0°
C15	C16	C14	C13	178.9°	180.0°
C15	C16	C13	C5	4.1°	0.0°
C15	C16	C14	C9	1.5°	0.0°
C15	C16	C14	C8	178.0°	180.0°
C15	C16	C13	C6	177.0°	180.0°
C3	C12	C4	C5	174.2°	179.9°
C3	C12	C4	H4	5.7°	0.0°
H3	C3	C12	C4	0.8°	0.1°
C12	C4	C5	H4	179.9°	179.9°
C12	C4	C5	C13	4.6°	0.0°
C12	C4	C5	H5	176.3°	179.9°
C14	C16	C13	C5	177.0°	180.0°
C16	C14	C9	C10	0.7°	0.0°
C16	C14	C9	C8	179.5°	180.0°
C16	C14	C9	H9	177.8°	180.0°
C16	C14	C8	C7	3.2°	0.0°
C16	C14	C8	H8	177.3°	180.0°
C14	C16	C13	C6	1.9°	0.0°
C16	C13	C5	C4	0.0°	0.0°
C16	C13	C5	C6	179.0°	180.0°
C16	C13	C5	H5	179.1°	179.9°
C13	C16	C14	C9	177.4°	180.0°
C13	C16	C14	C8	3.0°	0.0°
C16	C13	C6	C7	6.8°	0.0°
C16	C13	C6	H6	175.8°	180.0°
C4	C5	C13	H5	179.2°	179.9°
C4	C5	C13	C6	179.0°	180.0°
C13	C5	C4	H4	175.5°	179.9°
C5	C13	C6	C7	172.1°	180.0°
C5	C13	C6	H6	5.3°	0.0°
H5	C5	C4	H4	3.6°	0.1°
H5	C5	C13	C6	0.2°	0.0°
C10	C9	C14	H9	178.5°	180.0°
C10	C9	C14	C8	178.8°	180.0°
H10	C10	C9	C14	179.6°	179.9°
H10	C10	C9	H9	1.1°	0.0°
C9	C14	C8	C7	177.3°	180.0°
C9	C14	C8	H8	2.3°	0.0°
C8	C14	C9	H9	2.7°	0.1°
C14	C8	C7	H8	179.6°	180.0°
C14	C8	C7	C6	1.7°	0.0°
C14	C8	C7	H7	178.0°	180.0°
C8	C7	C6	H7	179.7°	179.9°
C8	C7	C6	C13	6.7°	0.1°
C8	C7	C6	H6	175.8°	180.0°
H8	C8	C7	C6	177.9°	180.0°
H8	C8	C7	H7	2.4°	0.0°
C7	C6	C13	H6	177.4°	180.0°
H7	C7	C6	C13	172.9°	180.0°
H7	C7	C6	H6	4.5°	0.0°

Definition date:	2004-02-09
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1S88